Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002362

Physical Location & Seq

Genomic Coordinates Reverse (-)

82885028 .. 82885423

Gene Structure 396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG599400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAAGGCTATGGCTTTCAAACTCAAGCCTAGCAACTTAGTTTTAAATGAAGTTGCTTATGGATATTGTGAGAAGGACTTTGATGATTTGATGAGCTTCTATGCTGAGATTAAGTGTGCCCCAGAAGTTATGGCTGGGAATAGGATTATGCATTCTCTTTGTAGCCATTTTGGGACAAGAAGAGCAGAACCTTATTTGCAAGAATTAGAAATTTTAGGCTTCAATCCTGATGAGGTAACCTTTGGAATCATGATTGGCTGGAGCTGTCGTGAACGAAAACTTAAAAGTGCCTTTGTTTACCTATCAGAGATGTTGGGAAGACACCTAAACCCCCATATATGTAATCAGCGGGGTATTTATGGAGGGTATGTGGAAGCATGCTGGGAAGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048037 GO:0051536 GO:0051540 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

131

Amino Acids

15.0

Weight (kDa)

6.07

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	73 - 104	7.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15280
fragaria_vesca	FvH4_6g47953 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48880 FvH4_6g48880
malus_domestica	MD09G1053400.v1.1
prunus_persica	Prupe.3G265200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167491 RchiOBHm_Chr2g0167571 RchiOBHm_Chr2g0167581
rosa_laevigata	RLG00000021724 RLG00000021736
rosa_multiflora	Rmu_sc0000056.1_g000010 Rmu_sc0000056.1_g000011 Rmu_sc0001970.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083370 Rroxscaffold_2G00083410 Rroxscaffold_2G00083440
rosa_rugosa	Rorug02G0530600
rosa_samantha	Rh2AG597900 Rh2AG598800 Rh2AG599200 Rh2AG599300 Rh2AG599400 Rh2BG609400 Rh2BG609800 Rh2BG609900 Rh2BG610000 Rh2CG580300 Rh2DG620700 Rh2DG621000 Rh2DG621100 Rh2DG621900 Rh2DG622000 Rh2DG622100 Rh2DG622600 Rh2DG622700
rosa_wichuraiana	Rw2G049750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	349
AcsI	RAATTY	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	19, 223
AluBI	AGCT	2 cut(s)	96, 264
AluI	AGCT	2 cut(s)	96, 264
ApoI	RAATTY	1 cut(s)	210
BaeGI	GKGCMC	1 cut(s)	121
BbsI	GAAGAC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	280
BpuEI	CTTGAG	1 cut(s)	8
BsaXI	ACNNNNNCTCC	4 cut(s)	253, 283, 354, 384
BseMII	CTCAG	1 cut(s)	96
BseSI	GKGCMC	1 cut(s)	121
BseYI	CCCAGC	2 cut(s)	134, 381
BslFI	GGGAC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	187
BsmI	GAATGC	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	121
BspACI	CCGC	1 cut(s)	349
BspCNI	CTCAG	1 cut(s)	97
BspHI	TCATGA	1 cut(s)	249
BspQI	GCTCTTC	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	379
BstDEI	CTNAG	2 cut(s)	37, 105
BstEII	GGTNACC	1 cut(s)	235
BstNSI	RCATGY	1 cut(s)	381
BstPI	GGTNACC	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	121
BstV2I	GAAGAC	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	379
CciI	TCATGA	1 cut(s)	249
CviAII	CATG	2 cut(s)	250, 378
CviJI	RGCY	9 cut(s)	8, 14, 28, 96, 134, 165, 219, 258, 264
CviKI_1	RGCY	9 cut(s)	8, 14, 28, 96, 134, 165, 219, 258, 264
DdeI	CTNAG	2 cut(s)	37, 105
DraI	TTTAAA	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Eco91I	GGTNACC	1 cut(s)	235
EcoO65I	GGTNACC	1 cut(s)	235
EcoT22I	ATGCAT	1 cut(s)	153
FaeI	CATG	2 cut(s)	253, 381
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	2 cut(s)	249, 377
FauI	CCCGC	1 cut(s)	342
FspBI	CTAG	1 cut(s)	30
GsaI	CCCAGC	2 cut(s)	138, 385
GsuI	CTGGAG	1 cut(s)	280
Hin1II	CATG	2 cut(s)	253, 381
HinfI	GANTC	1 cut(s)	246
Hpy166II	GTNNAC	2 cut(s)	272, 298
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	3 cut(s)	227, 250, 269
Hpy8I	GTNNAC	2 cut(s)	272, 298
HpyAV	CCTTC	2 cut(s)	67, 380
HpyCH4V	TGCA	2 cut(s)	151, 199
HpyF3I	CTNAG	2 cut(s)	37, 105
Hsp92II	CATG	2 cut(s)	253, 381
LguI	GCTCTTC	1 cut(s)	175
LmnI	GCTCC	1 cut(s)	261
LpnPI	CCDG	5 cut(s)	120, 135, 240, 244, 367
MaeI	CTAG	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	235
MboII	GAAGA	2 cut(s)	192, 330
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	2 cut(s)	203, 210
MnlI	CCTC	2 cut(s)	226, 356
Mph1103I	ATGCAT	1 cut(s)	153
MseI	TTAA	3 cut(s)	44, 111, 282
MspA1I	CMGCKG	1 cut(s)	349
Mva1269I	GAATGC	1 cut(s)	151
NlaIII	CATG	2 cut(s)	253, 381
NsiI	ATGCAT	1 cut(s)	153
NspI	RCATGY	1 cut(s)	381
PaeI	GCATGC	1 cut(s)	381
PagI	TCATGA	1 cut(s)	249
PciSI	GCTCTTC	1 cut(s)	175
PctI	GAATGC	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	246
PspEI	GGTNACC	1 cut(s)	235
PspFI	CCCAGC	2 cut(s)	134, 381
SapI	GCTCTTC	1 cut(s)	175
SaqAI	TTAA	3 cut(s)	44, 111, 282
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	8 cut(s)	98, 193, 237, 242, 266, 303, 327, 391
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SphI	GCATGC	1 cut(s)	381
Sse9I	AATT	2 cut(s)	203, 210
SsiI	CCGC	1 cut(s)	349
SspMI	CTAG	1 cut(s)	30
TasI	AATT	2 cut(s)	203, 210
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	3 cut(s)	44, 111, 282
Tru9I	TTAA	3 cut(s)	44, 111, 282
TspDTI	ATGAA	2 cut(s)	17, 63
XapI	RAATTY	1 cut(s)	210
XceI	RCATGY	1 cut(s)	381
XspI	CTAG	1 cut(s)	30
Zsp2I	ATGCAT	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.