Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002362

Physical Location & Seq

Genomic Coordinates Reverse (-)

85137385 .. 85137762

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG621000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGTAGATAGGGGGACTACACCTGATTTGTCGACTTTCAGGATTCTCTTAGCAGGCTATTGTAAAGTTAGAAAATTTGATGAAGCCAAAAGGATAGTTTTTGATATGGCAAGCCATGGACTGATTCAAAACTCTTCAGATGAGGATCCGCTATCCAAAGCATTTATGGTTCTGGGTTTCAAGCCATTAGTTGTGACATTGAAGAGAGATAATGATGTTGGGTTTGCTAAAACAGAGTTTTATGATAATCTTGGGAATGGACTTTATTTGGATACAGACCTGGATAAGTATGAGAAAAGAATCACTGGGATCCTAGAAGATTGCATGGTACCTGATTTTTACTCTCTTATGATGAAAGAATGCACTCTTGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048037 GO:0051536 GO:0051540 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

125

Amino Acids

14.19

Weight (kDa)

4.94

Isoelectric Point (pI)

30.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15280
fragaria_vesca	FvH4_6g47953 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48880 FvH4_6g48880
malus_domestica	MD09G1053400.v1.1
prunus_persica	Prupe.3G265200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167491 RchiOBHm_Chr2g0167571 RchiOBHm_Chr2g0167581
rosa_laevigata	RLG00000021724 RLG00000021736
rosa_multiflora	Rmu_sc0000056.1_g000010 Rmu_sc0000056.1_g000011 Rmu_sc0001970.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083370 Rroxscaffold_2G00083410 Rroxscaffold_2G00083440
rosa_rugosa	Rorug02G0530600
rosa_samantha	Rh2AG597900 Rh2AG598800 Rh2AG599200 Rh2AG599300 Rh2AG599400 Rh2BG609400 Rh2BG609800 Rh2BG609900 Rh2BG610000 Rh2CG580300 Rh2DG620700 Rh2DG621000 Rh2DG621100 Rh2DG621900 Rh2DG622000 Rh2DG622100 Rh2DG622600 Rh2DG622700
rosa_wichuraiana	Rw2G049750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	328
AccB1I	GGYRCC	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	32
AciI	CCGC	1 cut(s)	149
AclWI	GGATC	4 cut(s)	140, 153, 304, 317
AcsI	RAATTY	2 cut(s)	74, 372
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	1 cut(s)	330
AgsI	TTSAA	3 cut(s)	128, 181, 202
AjnI	CCWGG	1 cut(s)	279
AjuI	GAANNNNNNNTTGG	1 cut(s)	351
AlwI	GGATC	4 cut(s)	140, 153, 304, 317
ApoI	RAATTY	2 cut(s)	74, 372
Asp718I	GGTACC	1 cut(s)	328
BamHI	GGATCC	2 cut(s)	145, 309
BanI	GGYRCC	1 cut(s)	328
BciT130I	CCWGG	1 cut(s)	281
BciVI	GTATCC	1 cut(s)	265
BfaI	CTAG	1 cut(s)	314
BfuI	GTATCC	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	281
BmiI	GGNNCC	3 cut(s)	147, 311, 330
BmrFI	CCNGG	1 cut(s)	281
BmrI	ACTGGG	1 cut(s)	315
BmuI	ACTGGG	1 cut(s)	315
BsaBI	GATNNNNATC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	310
Bse8I	GATNNNNATC	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	115
BseJI	GATNNNNATC	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	310
BshNI	GGYRCC	1 cut(s)	328
BslFI	GGGAC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	28
BsmI	GAATGC	1 cut(s)	365
Bsp143I	GATC	2 cut(s)	145, 309
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	1 cut(s)	149
BspLI	GGNNCC	3 cut(s)	147, 311, 330
BspPI	GGATC	4 cut(s)	140, 153, 304, 317
BspT107I	GGYRCC	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	2 cut(s)	145, 309
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	281
Bst6I	CTCTTC	2 cut(s)	139, 197
BstC8I	GCNNGC	2 cut(s)	55, 112
BstDEI	CTNAG	1 cut(s)	49
BstDSI	CCRYGG	1 cut(s)	115
BstKTI	GATC	2 cut(s)	148, 312
BstMBI	GATC	2 cut(s)	145, 309
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BstX2I	RGATCY	2 cut(s)	145, 309
BstYI	RGATCY	2 cut(s)	145, 309
BsuI	GTATCC	1 cut(s)	265
BtgI	CCRYGG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	2 cut(s)	55, 112
Csp6I	GTAC	1 cut(s)	329
CviAII	CATG	2 cut(s)	116, 325
CviJI	RGCY	4 cut(s)	57, 86, 114, 184
CviKI_1	RGCY	4 cut(s)	57, 86, 114, 184
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	1 cut(s)	49
DpnI	GATC	2 cut(s)	147, 311
DpnII	GATC	2 cut(s)	145, 309
Eam1104I	CTCTTC	2 cut(s)	139, 197
EarI	CTCTTC	2 cut(s)	139, 197
Eco130I	CCWWGG	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	2 cut(s)	119, 328
FaiI	YATR	7 cut(s)	107, 117, 167, 243, 291, 326, 350
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	2 cut(s)	115, 324
FblI	GTMKAC	1 cut(s)	32
FspBI	CTAG	1 cut(s)	314
Hin1II	CATG	2 cut(s)	119, 328
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	3 cut(s)	43, 124, 300
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	33
HpyCH4V	TGCA	2 cut(s)	324, 363
HpyF3I	CTNAG	1 cut(s)	49
Hsp92II	CATG	2 cut(s)	119, 328
KpnI	GGTACC	1 cut(s)	332
Kzo9I	GATC	2 cut(s)	145, 309
LpnPI	CCDG	8 cut(s)	25, 36, 39, 158, 266, 291, 293, 345
MaeI	CTAG	1 cut(s)	314
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	2 cut(s)	147, 311
MboI	GATC	2 cut(s)	145, 309
MboII	GAAGA	3 cut(s)	126, 214, 329
MflI	RGATCY	2 cut(s)	145, 309
MluCI	AATT	2 cut(s)	74, 372
MnlI	CCTC	1 cut(s)	136
MspR9I	CCNGG	1 cut(s)	281
Mva1269I	GAATGC	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	281
NcoI	CCATGG	1 cut(s)	115
NdeII	GATC	2 cut(s)	145, 309
NlaIII	CATG	2 cut(s)	119, 328
NlaIV	GGNNCC	3 cut(s)	147, 311, 330
NmuCI	GTSAC	1 cut(s)	193
PctI	GAATGC	1 cut(s)	365
PfeI	GAWTC	3 cut(s)	43, 124, 300
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	3 cut(s)	147, 311, 330
PsuI	RGATCY	2 cut(s)	145, 309
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
SalI	GTCGAC	1 cut(s)	31
Sau3AI	GATC	2 cut(s)	145, 309
ScrFI	CCNGG	1 cut(s)	281
SetI	ASST	3 cut(s)	25, 282, 334
Sse9I	AATT	2 cut(s)	74, 372
SsiI	CCGC	1 cut(s)	149
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	115
TaqI	TCGA	1 cut(s)	32
TasI	AATT	2 cut(s)	74, 372
TfiI	GAWTC	3 cut(s)	43, 124, 300
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	96, 368
TspRI	CASTG	1 cut(s)	310
XapI	RAATTY	2 cut(s)	74, 372
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	32
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.