Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002362

Physical Location & Seq

Genomic Coordinates Reverse (-)

75911150 .. 75914956

Gene Structure 3807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG580300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3807 bp

ATGAGACAAAGCAGCACCACCATAGCTCTATGCAATGAGATGCTTCAAGTTTTGTGTACCTGTTCACCCCACAAGCCTCACATCAAACAGGTTGGTTCTCTTTACTCTCTGTTCTCACTCTTCACCAATAACCACTGCCTCTCAACTACCACTTCTTCATCCCCAATTCCCCATCATCTTCAACAACACACAAAAACCAACACCCAAGTAGATTTATCTCCTAATTGTTTCAATGGTATAGCCCAATCTGTTATATTGAGGTGTTCCCAATATTTTGACAAGAGTAAGGGCAAAGACTTTGCCAATGCTTCTCTAAAAGACCTTCTTTTGGAGATTTCTGATTTAGTGCCTGAACAAACTCGTAGGCTTAGGCGGGTTTCGGAGCCGAAACCCGAAGATGTGCTTGAATTATTACTGGGTTTTGAATTGCAGTGTGCGCAAGTTGGATTTGAAGCTAGAAAGGTTGAGTCTTTGTGGGGAATTTTCAAGTGGGTTAGTGAAAAAGTTGAGGGCTTTAAGCATAAACCTCAGTCATGTGAGGTCATGGCCTCGTTGCTTCTCCGAGTGGGATTGCTTAGAGAAGTTGAGTTCTTGCTTTCCACAATGGAAAGTCAAGGAGGTTTGTTGGATAGTCAAGAAATTTACAGTGATTTGATTAAAGGGTATGTTGGTGTTGGTGAGTTAGATAGGGCCATTTCTATCTATGATCGAATTACGGGGCGTGTAGTGCCATCATTGCAGTGTTGTTGTGTTCTACTTGATCAATTGGTGGGAATGAGGAAGACCCAATTGGCGTTTCGAGTTTGTAGTGATATGGCGGAAATGGGTTTTGATTTGAGAGATGTGAAGAAGGCCACATTTGAGGGTCTCATTAGACTGCTTTGCAGGGATGGAAAGATTCAGGAGGCAAGAAATTTTGTCAAGAAGGCTATGGCTTTCGAACTCAAACCTAGCAACTTAGTTTTAAATGAAGTTGCTGATGGATATTGTGAGAAGAAGGACTTTGATGATTTGATGAGCTTCTATTCTGAGATTAAGTGTGCCCCAGAAGTTATGGCTGGGAATAGGATTATGCATTCTCTTTGCAGCCATTTTGGGACAAGAAGAGCAGAACTTTATTTGCAAGAATTAGAAATTTTAGGCTTCAATCCTGATGAGGTAACCTTTGGAATCATGATTGGCTGGAGCTGTCGTGAACGAAAACTTAAAAGTGCCTTTGTTTACCTATCAGAGATGTTGGGAAGACACCTAAACCCCCATATATGTACCTATAATGCTCTTATCAGCGGGGTATTTATGGAGGGTATGTGGAAGCACGCTGGGAAGGTGTTTGATGAGATGGTAGATAGGGGGACTACACCTGATTTGTCGACTTTCAGGATTCTCTTAGCAGGCTATTGTAAAGTCAGAAAATTTGATGAAGCCAAAAGGATAGTTTTTGATATGGCAAGCCATGGACTGATTCAAAACTCTTCAGATGAGGATCCGCTATCCAAAGCATTTATGGTTCTGGGTTTCAAGCCATTAGCTGTGACATTGAAGAGAGATAATGATGTTGGGTTTGCTAAAACAGAGTTTTATGATGATCTTGGGAATGGACTTTATTTGGATACAGACCTGGATAAGTATGAGAAAAGAGTCACTGGGATCCTAGAAGATTGCATGGTACCTGATTATTACTCTCTTATGATGATAGAATGCAGTCGTGGAAATTTGAAGGGTGCTTTGGTTTTGGCAGATGAAATGATCCGGTGGGGACAAGATTTGTCATTGTCTATGATGTCCGACTTACTGAAAGGGCTTTCTGCATCCCATTTACATACCAAGGGTATCACCAGCATTGTAGATAAAAAGCTTCACTTGGTAAATCAGCTAGACCAAGAAACTCTAAACTTTCTTGCCCAAGCATACGGCAAGAAAGGATTGACATATAATACAAGGATAGTGGTGAATGGAATGATAGAAAGGCATCTGAAAATCAACAATGAGACTTACACTGCTTTAGTAAAAGGTTTTTGTAAGAAAGGAAACTTGAGGGAGCTGAATGCTTGCTGGAATATTGCTCAAAATGACGGATGGTTACCAGGGCCGGAAGATTGTAAAGCCTTGATTGAATGTCTTTTCCATAAAGAAATGCTAAGAGAAGCAGTGCAGCTTCTTGAAAGCATTCTGATATCCTACCCAGACTTAAGGTCAGATATGTGTCATATGATCCTTGACAAGCTTTTTGTTACCGGTTTTACAGGAATTGCAAGCATATTGTTAGAAGAACTTGAACAGCGTGGTGGCATCCTGGATCAGATGGCTTATAACAATATTATTAGAGGATTGTGTAAGGGCAAGAATTTTCATGTGGCCTTTACAGTGCTGGACAGTATGCTGGCTAAAAATTTGGCCCCTTGTTTGGATGTTACTGTCCAATTAATTCCTCAGTTGTGTAGGGCTGATAGATTTGGAAAAGCAGTTAACTTGAAAGAGATTGGTCTAAGAGAGAACTCTTCCTATTCACTTTCTCTAGATCGTGCATTGATAAAAGGCTGTTGTATTTCAGGGAAAGTTACAGAAGCAACCACTCTACTACAGAATATGTTGTTAAAGCGGATACCTCCTGATGCTGAAATTTACAATTTTCTGGTTCAGGGTCATTGCAAGGTTAATGACTTAAAGAAAGTTTGGGAGCTACTTTGTGTCATGACAAGAAAAGGTTTCAACATTTCACTCTCAACTTACCGCAACTTGGTGTGTTTGATGTGTCTGGAAGGTAGGGTTCTTCATGCATGGAAATTGACTGAGCTTATGATTGGACAAAGTGATCCTCATGATCTCAGCATCTACAATATTCTGATATTCTATATTTTCCCAACCGGGAATACTTTGCTTGTCAAGAAAGTTGTGGAGCATTTGCAAGAGAAGAAATTGCTACTTGATGAAGTAACTTACAACTTTCTTGTACTTGGGTTTTGTAGATCTAAAGATGTGTCGAGTGCTGTGGATCATCTGTACACTATGATCTCTAAGGATTTCAGGCCAAGCAACCGCAACTTGAGAAAAGTTATAACCAGCCTGTGTGATGTTGGGGAGATTGAGAAAGCCTTGGAACTGAGTCAAGAAATGGAATTGAGAGGCCAGATTCATGATTCAATGATTCAAAATGCGATTGTTGAGGGTCTTTCTTCTCGTGGTAGGATTCAAGAAGCTGAAAGTTTTCTGGACAGGATGGTAGCGAAATGTCTAATTCCAGAAAATGTCAACTATAATAATCTAATCAAACTGTTTTGCTCGTATGGAAGACCAAACAAGGCAGTTAATTCTCTGAACATAATGCTGAAGAAAGGGAATGTTCCAGATTCTACCAGTTTTGATTCCATCATCAGCTCTTTCTGTGCCCTTGGTAATCTGGAGCAAGCTATGGATTTTCATGCTGAGATGTTGGATAGAAATCTTAAGCCAAGCATCGACACTTGGGACATTCTGGTCCATAACTTTTGTCAAGATGGAAAAACATCAGAGGCAGAAAGGCTATTGAAGTCTATGGGTTGTGCAGGTGAAACAGTGACCAGGAAGATATATCTGTCTGTAATTAATAGTTATCGCTCAGAGAACAATCTCGGAAAGGTCTCGGAGCTCATGCAAGCAATGCAACAGAGTGGTTATGAGCCAGACTTCGAGACACATTGGTCTCTCATAAGGAACCTAAGAGTTTCTAGTGACAAGGACAATGCAAACAGCAGCAAGGGTTTCCTGTCAAAGCTTCTCTCTGCAAGTGGATTTTCTAGGCAAAAGTATTCCAAGGCCAAACAGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048037 GO:0051536 GO:0051540 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

1268

Amino Acids

143.15

Weight (kDa)

7.11

Isoelectric Point (pI)

34.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	374 - 429	7e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	419 - 468	4.5e-14	PPR repeat family
PPR_2	PF13041	870 - 918	1.9e-07	PPR repeat family
TPR_24	PF23276	956 - 1067	1.6e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	1081 - 1128	4.7e-09	PPR repeat family
PPR_2	PF13041	1115 - 1164	2.7e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15280
fragaria_vesca	FvH4_6g47953 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48880 FvH4_6g48880
malus_domestica	MD09G1053400.v1.1
prunus_persica	Prupe.3G265200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167491 RchiOBHm_Chr2g0167571 RchiOBHm_Chr2g0167581
rosa_laevigata	RLG00000021724 RLG00000021736
rosa_multiflora	Rmu_sc0000056.1_g000010 Rmu_sc0000056.1_g000011 Rmu_sc0001970.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083370 Rroxscaffold_2G00083410 Rroxscaffold_2G00083440
rosa_rugosa	Rorug02G0530600
rosa_samantha	Rh2AG597900 Rh2AG598800 Rh2AG599200 Rh2AG599300 Rh2AG599400 Rh2BG609400 Rh2BG609800 Rh2BG609900 Rh2BG610000 Rh2CG580300 Rh2DG620700 Rh2DG621000 Rh2DG621100 Rh2DG621900 Rh2DG622000 Rh2DG622100 Rh2DG622600 Rh2DG622700
rosa_wichuraiana	Rw2G049750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2310, 3056
AarI	CACCTGC	1 cut(s)	3533
AasI	GACNNNNNNGTC	2 cut(s)	3473, 3676
Acc16I	TGCGCA	1 cut(s)	438
Acc36I	ACCTGC	1 cut(s)	3533
Acc65I	GGTACC	1 cut(s)	1666
AccB1I	GGYRCC	1 cut(s)	1666
AccI	GTMKAC	1 cut(s)	1370
AciI	CCGC	7 cut(s)	373, 818, 1287, 1487, 2599, 2731, 3037
AclWI	GGATC	9 cut(s)	1478, 1491, 1642, 1655, 1741, 2206, 2304, 2807, 3000
AcsI	RAATTY	9 cut(s)	480, 639, 913, 1134, 1412, 1711, 2344, 2389, 2619
AcuI	CTGAAG	2 cut(s)	1458, 3347
AfaI	GTAC	5 cut(s)	58, 1267, 1668, 2952, 3002
AfiI	CCNNNNNNNGG	4 cut(s)	328, 2404, 2737, 3801
AflII	CTTAAG	2 cut(s)	2188, 3443
AgeI	ACCGGT	1 cut(s)	2234
AhdI	GACNNNNNGTC	1 cut(s)	2191
AjnI	CCWGG	4 cut(s)	1617, 2083, 2292, 3557
AjuI	GAANNNNNNNTTGG	6 cut(s)	773, 780, 805, 812, 1709, 1741
Alw21I	GWGCWC	1 cut(s)	3627
Alw26I	GTCTC	5 cut(s)	872, 1982, 3622, 3662, 3684
AlwI	GGATC	9 cut(s)	1478, 1491, 1642, 1655, 1741, 2206, 2304, 2807, 3000
AoxI	GGCC	9 cut(s)	546, 690, 852, 2087, 2355, 2394, 3026, 3124, 3792
ApeKI	GCWGC	4 cut(s)	12, 1086, 2152, 3729
ApoI	RAATTY	9 cut(s)	480, 639, 913, 1134, 1412, 1711, 2344, 2389, 2619
ArsI	GACNNNNNNTTYG	2 cut(s)	2210, 2242
AseI	ATTAAT	2 cut(s)	2423, 3582
AsiGI	ACCGGT	1 cut(s)	2234
Asp700I	GAANNNNTTC	2 cut(s)	2166, 3204
Asp718I	GGTACC	1 cut(s)	1666
AspLEI	GCGC	1 cut(s)	439
AspS9I	GGNCC	4 cut(s)	690, 2087, 2395, 3475
AsuC2I	CCSGG	1 cut(s)	2866
AsuHPI	GGTGA	6 cut(s)	57, 115, 689, 1825, 1960, 3557
AsuII	TTCGAA	1 cut(s)	939
AvaII	GGWCC	1 cut(s)	3475
BaeGI	GKGCMC	2 cut(s)	1045, 3388
BamHI	GGATCC	2 cut(s)	1483, 1647
BanI	GGYRCC	1 cut(s)	1666
BanII	GRGCYC	1 cut(s)	3627
BauI	CACGAG	1 cut(s)	3177
BbsI	GAAGAC	3 cut(s)	788, 1249, 3295
Bbv12I	GWGCWC	1 cut(s)	3627
BbvI	GCAGC	4 cut(s)	24, 1098, 2164, 3741
BceAI	ACGGC	1 cut(s)	1927
BciT130I	CCWGG	4 cut(s)	1619, 2085, 2294, 3559
BciVI	GTATCC	2 cut(s)	1603, 2595
BclI	TGATCA	1 cut(s)	760
BcnI	CCSGG	1 cut(s)	2866
BcoDI	GTCTC	5 cut(s)	872, 1982, 3622, 3662, 3684
BfaI	CTAG	7 cut(s)	456, 951, 1652, 1874, 2516, 3705, 3774
BfmI	CTRYAG	1 cut(s)	2579
BfrI	CTTAAG	2 cut(s)	2188, 3443
BfuAI	ACCTGC	1 cut(s)	3533
BfuI	GTATCC	2 cut(s)	1603, 2595
BglII	AGATCT	1 cut(s)	2966
BisI	GCNGC	4 cut(s)	13, 1087, 2153, 3730
BlsI	GCNGC	4 cut(s)	14, 1088, 2154, 3731
Bme1390I	CCNGG	5 cut(s)	1619, 2085, 2294, 2866, 3559
Bme18I	GGWCC	1 cut(s)	3475
BmeRI	GACNNNNNGTC	1 cut(s)	2191
BmgT120I	GGNCC	4 cut(s)	690, 2087, 2395, 3475
BmiI	GGNNCC	6 cut(s)	384, 1485, 1649, 1668, 2397, 3692
BmrFI	CCNGG	5 cut(s)	1619, 2085, 2294, 2866, 3559
BmrI	ACTGGG	2 cut(s)	425, 1653
BmsI	GCATC	7 cut(s)	30, 1817, 1978, 2298, 2602, 2838, 3462
BmuI	ACTGGG	2 cut(s)	425, 1653
BpiI	GAAGAC	3 cut(s)	788, 1249, 3295
BpmI	CTGGAG	2 cut(s)	1204, 3419
Bpu10I	CCTNAGC	1 cut(s)	368
Bpu14I	TTCGAA	1 cut(s)	939
BpuEI	CTTGAG	2 cut(s)	2053, 3064
BpuMI	CCSGG	1 cut(s)	2866
BsaBI	GATNNNNATC	2 cut(s)	1482, 3438
BsaI	GGTCTC	3 cut(s)	872, 3622, 3684
BsaJI	CCNNGG	6 cut(s)	1453, 1824, 2084, 3093, 3388, 3789
BsaWI	WCCGGW	2 cut(s)	1749, 2234
BsaXI	ACNNNNNCTCC	4 cut(s)	1177, 1207, 1292, 1322
Bsc4I	CCNNNNNNNGG	4 cut(s)	328, 2404, 2737, 3801
Bse118I	RCCGGY	1 cut(s)	2234
Bse1I	ACTGG	3 cut(s)	420, 1648, 3354
Bse3DI	GCAATG	4 cut(s)	40, 734, 2644, 3642
Bse8I	GATNNNNATC	2 cut(s)	1482, 3438
BseBI	CCWGG	4 cut(s)	1619, 2085, 2294, 3559
BseDI	CCNNGG	6 cut(s)	1453, 1824, 2084, 3093, 3388, 3789
BseGI	GGATG	7 cut(s)	158, 895, 1808, 2081, 2289, 2413, 3222
BseJI	GATNNNNATC	2 cut(s)	1482, 3438
BseLI	CCNNNNNNNGG	4 cut(s)	328, 2404, 2737, 3801
BseMI	GCAATG	4 cut(s)	40, 734, 2644, 3642
BseMII	CTCAG	8 cut(s)	542, 1020, 2444, 2781, 2839, 3092, 3414, 3609
BseNI	ACTGG	3 cut(s)	420, 1648, 3354
BseSI	GKGCMC	2 cut(s)	1045, 3388
BseXI	GCAGC	4 cut(s)	24, 1098, 2164, 3741
BseYI	CCCAGC	2 cut(s)	1058, 1319
BsgI	GTGCAG	2 cut(s)	2171, 3561
BshFI	GGCC	9 cut(s)	548, 692, 854, 2089, 2357, 2396, 3028, 3126, 3794
BshNI	GGYRCC	1 cut(s)	1666
BshTI	ACCGGT	1 cut(s)	2234
BsiHKAI	GWGCWC	1 cut(s)	3627
BsiSI	CCGG	4 cut(s)	1750, 2090, 2235, 2865
BslFI	GGGAC	4 cut(s)	1111, 1366, 1770, 3479
BslI	CCNNNNNNNGG	4 cut(s)	328, 2404, 2737, 3801
BsmAI	GTCTC	5 cut(s)	872, 1982, 3622, 3662, 3684
BsmFI	GGGAC	4 cut(s)	1111, 1366, 1770, 3479
BsmI	GAATGC	4 cut(s)	1075, 1703, 2050, 2166
BsnI	GGCC	9 cut(s)	548, 692, 854, 2089, 2357, 2396, 3028, 3126, 3794
Bso31I	GGTCTC	3 cut(s)	872, 3622, 3684
Bsp119I	TTCGAA	1 cut(s)	939
Bsp1286I	GDGCHC	3 cut(s)	1045, 3388, 3627
Bsp1407I	TGTACA	1 cut(s)	3000
Bsp19I	CCATGG	1 cut(s)	1453
BspACI	CCGC	7 cut(s)	373, 818, 1287, 1487, 2599, 2731, 3037
BspANI	GGCC	9 cut(s)	548, 692, 854, 2089, 2357, 2396, 3028, 3126, 3794
BspCNI	CTCAG	8 cut(s)	541, 1021, 2443, 2782, 2838, 3093, 3415, 3608
BspHI	TCATGA	4 cut(s)	1173, 2691, 2818, 3133
BspLI	GGNNCC	6 cut(s)	384, 1485, 1649, 1668, 2397, 3692
BspMI	ACCTGC	1 cut(s)	3533
BspPI	GGATC	9 cut(s)	1478, 1491, 1642, 1655, 1741, 2206, 2304, 2807, 3000
BspQI	GCTCTTC	1 cut(s)	1099
BspT104I	TTCGAA	1 cut(s)	939
BspT107I	GGYRCC	1 cut(s)	1666
BspTI	CTTAAG	2 cut(s)	2188, 3443
BspTNI	GGTCTC	3 cut(s)	872, 3622, 3684
BsrDI	GCAATG	4 cut(s)	40, 734, 2644, 3642
BsrFI	RCCGGY	1 cut(s)	2234
BsrGI	TGTACA	1 cut(s)	3000
BsrI	ACTGG	3 cut(s)	420, 1648, 3354
BssAI	RCCGGY	1 cut(s)	2234
BssECI	CCNNGG	6 cut(s)	1453, 1824, 2084, 3093, 3388, 3789
BssSI	CACGAG	1 cut(s)	3177
BssT1I	CCWWGG	5 cut(s)	1453, 1824, 3093, 3388, 3789
Bst2BI	CACGAG	1 cut(s)	3177
Bst2UI	CCWGG	4 cut(s)	1619, 2085, 2294, 3559
Bst4CI	ACNGT	6 cut(s)	647, 2365, 2375, 2416, 3273, 3553
Bst6I	CTCTTC	5 cut(s)	125, 1099, 1477, 1535, 2503
BstAFI	CTTAAG	2 cut(s)	2188, 3443
BstAPI	GCANNNNNTGC	1 cut(s)	3637
BstAUI	TGTACA	1 cut(s)	3000
BstBI	TTCGAA	1 cut(s)	939
BstC8I	GCNNGC	8 cut(s)	1317, 1393, 1450, 2050, 2254, 2382, 3405, 3633
BstDSI	CCRYGG	1 cut(s)	1453
BstEII	GGTNACC	2 cut(s)	1159, 2079
BstF5I	GGATG	7 cut(s)	158, 895, 1808, 2081, 2289, 2413, 3222
BstHHI	GCGC	1 cut(s)	439
BstMAI	GTCTC	5 cut(s)	872, 1982, 3622, 3662, 3684
BstMWI	GCNNNNNNNGC	4 cut(s)	436, 727, 736, 3637
BstNI	CCWGG	4 cut(s)	1619, 2085, 2294, 3559
BstPI	GGTNACC	2 cut(s)	1159, 2079
BstSCI	CCNGG	5 cut(s)	1617, 2083, 2292, 2864, 3557
BstSFI	CTRYAG	1 cut(s)	2579
BstSLI	GKGCMC	2 cut(s)	1045, 3388
BstV1I	GCAGC	4 cut(s)	24, 1098, 2164, 3741
BstV2I	GAAGAC	3 cut(s)	788, 1249, 3295
BstX2I	RGATCY	3 cut(s)	1483, 1647, 2966
BstYI	RGATCY	3 cut(s)	1483, 1647, 2966
BsuI	GTATCC	2 cut(s)	1603, 2595
BsuRI	GGCC	9 cut(s)	548, 692, 854, 2089, 2357, 2396, 3028, 3126, 3794
BtgI	CCRYGG	1 cut(s)	1453
BtsCI	GGATG	7 cut(s)	158, 895, 1808, 2081, 2289, 2413, 3222
BtsI	GCAGTG	5 cut(s)	133, 437, 746, 1995, 2154
BtsIMutI	CAGTG	9 cut(s)	133, 437, 652, 746, 1641, 1995, 2154, 2370, 3558
BveI	ACCTGC	1 cut(s)	3533
Cac8I	GCNNGC	8 cut(s)	1317, 1393, 1450, 2050, 2254, 2382, 3405, 3633
CciI	TCATGA	4 cut(s)	1173, 2691, 2818, 3133
CfoI	GCGC	1 cut(s)	439
Cfr10I	RCCGGY	1 cut(s)	2234
Cfr13I	GGNCC	4 cut(s)	690, 2087, 2395, 3475
Csp6I	GTAC	5 cut(s)	57, 1266, 1667, 2951, 3001
CspAI	ACCGGT	1 cut(s)	2234
CspCI	CAANNNNNGTGG	2 cut(s)	1926, 1961
CviQI	GTAC	5 cut(s)	57, 1266, 1667, 2951, 3001
DraI	TTTAAA	1 cut(s)	966
DrdI	GACNNNNNNGTC	2 cut(s)	3473, 3676
DriI	GACNNNNNGTC	1 cut(s)	2191
DseDI	GACNNNNNNGTC	2 cut(s)	3473, 3676
Eam1104I	CTCTTC	5 cut(s)	125, 1099, 1477, 1535, 2503
Eam1105I	GACNNNNNGTC	1 cut(s)	2191
EarI	CTCTTC	5 cut(s)	125, 1099, 1477, 1535, 2503
EciI	GGCGGA	1 cut(s)	833
Ecl136II	GAGCTC	1 cut(s)	3625
Eco130I	CCWWGG	5 cut(s)	1453, 1824, 3093, 3388, 3789
Eco24I	GRGCYC	1 cut(s)	3627
Eco31I	GGTCTC	3 cut(s)	872, 3622, 3684
Eco32I	GATATC	1 cut(s)	2175
Eco47I	GGWCC	1 cut(s)	3475
Eco53kI	GAGCTC	1 cut(s)	3625
Eco57I	CTGAAG	2 cut(s)	1458, 3347
Eco91I	GGTNACC	2 cut(s)	1159, 2079
EcoICRI	GAGCTC	1 cut(s)	3625
EcoO65I	GGTNACC	2 cut(s)	1159, 2079
EcoRII	CCWGG	4 cut(s)	1617, 2083, 2292, 3557
EcoRV	GATATC	1 cut(s)	2175
EcoT14I	CCWWGG	5 cut(s)	1453, 1824, 3093, 3388, 3789
EcoT22I	ATGCAT	2 cut(s)	1077, 2779
EcoT38I	GRGCYC	1 cut(s)	3627
ErhI	CCWWGG	5 cut(s)	1453, 1824, 3093, 3388, 3789
FalI	AAGNNNNNCTT	8 cut(s)	309, 341, 387, 419, 986, 1018, 1844, 1876
FaqI	GGGAC	4 cut(s)	1111, 1366, 1770, 3479
FauI	CCCGC	2 cut(s)	366, 1280
FauNDI	CATATG	1 cut(s)	2208
FbaI	TGATCA	1 cut(s)	760
FblI	GTMKAC	1 cut(s)	1370
Fnu4HI	GCNGC	4 cut(s)	13, 1087, 2153, 3730
FokI	GGATG	7 cut(s)	145, 902, 1795, 2088, 2276, 2420, 3229
FriOI	GRGCYC	1 cut(s)	3627
Fsp4HI	GCNGC	4 cut(s)	13, 1087, 2153, 3730
FspBI	CTAG	7 cut(s)	456, 951, 1652, 1874, 2516, 3705, 3774
FspI	TGCGCA	1 cut(s)	438
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	4 cut(s)	13, 1087, 2153, 3730
GsaI	CCCAGC	2 cut(s)	1062, 1323
GsuI	CTGGAG	2 cut(s)	1204, 3419
HaeIII	GGCC	9 cut(s)	548, 692, 854, 2089, 2357, 2396, 3028, 3126, 3794
HapII	CCGG	4 cut(s)	1750, 2090, 2235, 2865
HhaI	GCGC	1 cut(s)	439
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HincII	GTYRAC	3 cut(s)	1371, 2467, 3250
HindII	GTYRAC	3 cut(s)	1371, 2467, 3250
HindIII	AAGCTT	3 cut(s)	1853, 2222, 3749
HpaI	GTTAAC	1 cut(s)	2467
HpaII	CCGG	4 cut(s)	1750, 2090, 2235, 2865
HphI	GGTGA	6 cut(s)	57, 115, 689, 1825, 1960, 3557
Hpy166II	GTNNAC	8 cut(s)	57, 65, 1196, 1222, 1371, 2467, 3003, 3250
Hpy8I	GTNNAC	8 cut(s)	57, 65, 1196, 1222, 1371, 2467, 3003, 3250
HpyAV	CCTTC	7 cut(s)	332, 844, 919, 991, 1318, 1711, 2753
HpyCH4III	ACNGT	6 cut(s)	647, 2365, 2375, 2416, 3273, 3553
HpyF10VI	GCNNNNNNNGC	4 cut(s)	436, 727, 736, 3637
HspAI	GCGC	1 cut(s)	437
KpnI	GGTACC	1 cut(s)	1670
Ksp22I	TGATCA	1 cut(s)	760
KspAI	GTTAAC	1 cut(s)	2467
LguI	GCTCTTC	1 cut(s)	1099
LmnI	GCTCC	7 cut(s)	382, 1185, 2038, 2677, 2896, 3400, 3622
Lsp1109I	GCAGC	4 cut(s)	24, 1098, 2164, 3741
LweI	GCATC	7 cut(s)	30, 1817, 1978, 2298, 2602, 2838, 3462
MaeI	CTAG	7 cut(s)	456, 951, 1652, 1874, 2516, 3705, 3774
MfeI	CAATTG	2 cut(s)	764, 788
MflI	RGATCY	3 cut(s)	1483, 1647, 2966
MhlI	GDGCHC	3 cut(s)	1045, 3388, 3627
MlyI	GAGTC	3 cut(s)	476, 1647, 3112
MmeI	TCCRAC	4 cut(s)	424, 606, 1809, 3411
Mph1103I	ATGCAT	2 cut(s)	1077, 2779
MroXI	GAANNNNTTC	2 cut(s)	2166, 3204
MslI	CAYNNNNRTG	1 cut(s)	739
MspA1I	CMGCKG	1 cut(s)	1287
MspCI	CTTAAG	2 cut(s)	2188, 3443
MspI	CCGG	4 cut(s)	1750, 2090, 2235, 2865
MspR9I	CCNGG	5 cut(s)	1619, 2085, 2294, 2866, 3559
MunI	CAATTG	2 cut(s)	764, 788
Mva1269I	GAATGC	4 cut(s)	1075, 1703, 2050, 2166
MvaI	CCWGG	4 cut(s)	1619, 2085, 2294, 3559
MwoI	GCNNNNNNNGC	4 cut(s)	436, 727, 736, 3637
NciI	CCSGG	1 cut(s)	2866
NcoI	CCATGG	1 cut(s)	1453
NdeI	CATATG	1 cut(s)	2208
NlaIV	GGNNCC	6 cut(s)	384, 1485, 1649, 1668, 2397, 3692
NmuCI	GTSAC	4 cut(s)	1531, 1639, 3553, 3707
NsbI	TGCGCA	1 cut(s)	438
NsiI	ATGCAT	2 cut(s)	1077, 2779
NspV	TTCGAA	1 cut(s)	939
PagI	TCATGA	4 cut(s)	1173, 2691, 2818, 3133
PaqCI	CACCTGC	1 cut(s)	3533
PciSI	GCTCTTC	1 cut(s)	1099
PctI	GAATGC	4 cut(s)	1075, 1703, 2050, 2166
PdmI	GAANNNNTTC	2 cut(s)	2166, 3204
PfoI	TCCNGGA	1 cut(s)	2292
PinAI	ACCGGT	1 cut(s)	2234
PkrI	GCNGC	4 cut(s)	14, 1088, 2154, 3731
PleI	GAGTC	3 cut(s)	475, 1646, 3111
PpsI	GAGTC	3 cut(s)	475, 1646, 3111
PshBI	ATTAAT	2 cut(s)	2423, 3582
PsiI	TTATAA	2 cut(s)	2310, 3056
Psp124BI	GAGCTC	1 cut(s)	3627
Psp6I	CCWGG	4 cut(s)	1617, 2083, 2292, 3557
PspEI	GGTNACC	2 cut(s)	1159, 2079
PspFI	CCCAGC	2 cut(s)	1058, 1319
PspGI	CCWGG	4 cut(s)	1617, 2083, 2292, 3557
PspN4I	GGNNCC	6 cut(s)	384, 1485, 1649, 1668, 2397, 3692
PspPI	GGNCC	4 cut(s)	690, 2087, 2395, 3475
PsuI	RGATCY	3 cut(s)	1483, 1647, 2966
RsaI	GTAC	5 cut(s)	58, 1267, 1668, 2952, 3002
RsaNI	GTAC	5 cut(s)	57, 1266, 1667, 2951, 3001
RseI	CAYNNNNRTG	1 cut(s)	739
SacI	GAGCTC	1 cut(s)	3627
SalI	GTCGAC	1 cut(s)	1369
SapI	GCTCTTC	1 cut(s)	1099
SatI	GCNGC	4 cut(s)	13, 1087, 2153, 3730
Sau96I	GGNCC	4 cut(s)	690, 2087, 2395, 3475
SchI	GAGTC	3 cut(s)	476, 1647, 3112
ScrFI	CCNGG	5 cut(s)	1619, 2085, 2294, 2866, 3559
SduI	GDGCHC	3 cut(s)	1045, 3388, 3627
SfaNI	GCATC	7 cut(s)	30, 1817, 1978, 2298, 2602, 2838, 3462
SfcI	CTRYAG	1 cut(s)	2579
SfuI	TTCGAA	1 cut(s)	939
SinI	GGWCC	1 cut(s)	3475
SmiMI	CAYNNNNRTG	1 cut(s)	739
SmlI	CTYRAG	4 cut(s)	2032, 2188, 3043, 3443
SmoI	CTYRAG	4 cut(s)	2032, 2188, 3043, 3443
SsiI	CCGC	7 cut(s)	373, 818, 1287, 1487, 2599, 2731, 3037
SspI	AATATT	4 cut(s)	272, 2059, 2317, 2839
SspMI	CTAG	7 cut(s)	456, 951, 1652, 1874, 2516, 3705, 3774
SstI	GAGCTC	1 cut(s)	3627
StyD4I	CCNGG	5 cut(s)	1617, 2083, 2292, 2864, 3557
StyI	CCWWGG	5 cut(s)	1453, 1824, 3093, 3388, 3789
TaaI	ACNGT	6 cut(s)	647, 2365, 2375, 2416, 3273, 3553
TaqI	TCGA	7 cut(s)	709, 799, 939, 1370, 2981, 3456, 3666
TatI	WGTACW	2 cut(s)	2950, 3000
TscAI	CASTG	9 cut(s)	140, 437, 652, 746, 1648, 2002, 2154, 2370, 3558
TseFI	GTSAC	4 cut(s)	1531, 1639, 3553, 3707
TseI	GCWGC	4 cut(s)	12, 1086, 2152, 3729
Tsp45I	GTSAC	4 cut(s)	1531, 1639, 3553, 3707
TspDTI	ATGAA	9 cut(s)	147, 984, 1434, 1755, 2339, 2762, 2943, 3122, 3407
TspGWI	ACGGA	1 cut(s)	2088
TspRI	CASTG	9 cut(s)	140, 437, 652, 746, 1648, 2002, 2154, 2370, 3558
Vha464I	CTTAAG	2 cut(s)	2188, 3443
VpaK11BI	GGWCC	1 cut(s)	3475
VspI	ATTAAT	2 cut(s)	2423, 3582
XapI	RAATTY	9 cut(s)	480, 639, 913, 1134, 1412, 1711, 2344, 2389, 2619
XbaI	TCTAGA	1 cut(s)	2515
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1501
XmiI	GTMKAC	1 cut(s)	1370
XmnI	GAANNNNTTC	2 cut(s)	2166, 3204
XspI	CTAG	7 cut(s)	456, 951, 1652, 1874, 2516, 3705, 3774
Zsp2I	ATGCAT	2 cut(s)	1077, 2779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.