Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002362

Physical Location & Seq

Genomic Coordinates Reverse (-)

66065705 .. 66067903

Gene Structure 2199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0530600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCTTCCCCAATCACTTCGTCTTTCCAAACCAGCAATTTGCGGTCGGCTTTTCTGGGCGAAAGAAAGGGTTTCATTGTTTACAGTGCTCCTGCAAGTAATGTTGGGTTTTTGAAGAAGACTGTGGAATGTAAGGAATCGAGAATTGGGAAGCAACCGATTGAAGTGCCGACCAATGTGACTCTGAAATTGGAAGGTCAGGCTCTGGAAGTAAAAGGCCCTTTGGGGCAGCTCTCGATGACTTACCCACGAGAAGTAGTGGTGGAGAAGGAGGACTCTGGACTTCTAAGGGTCAAGAAAGCAGTGGAGACAAGAAGGGCCAATCAAATGCACGGGCTTTTCAGGACACTTACGGACAATATGGTGGTGGGAGTATCCAAAGGATTTGAGAAGAGGTTACAGTTGATTGGCGTTGGTTATAGAGCAACACTAGAAGGGAGGATTTTGGTATTGAGTCTTGGGTTCTCCCATCCAGTTAGGATGGATATTCCTGATGGCATACAAGTGAAGGTGGAAGAAAACACCAGAATCATAGTTAGTGGATATGACAAGAGTGAAATTGGTCAGTTTGCTGCTTCCATCAGGAAATGGAGACCTCCAGAGCCATACAAAGGTAAGGGAGTGAAATATGCTGATGAAATTGTAAGAAGAAAGGAAGGAAAAGCAGGAAAGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048037 GO:0051536 GO:0051540 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

226

Amino Acids

25.09

Weight (kDa)

9.97

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	56 - 128	9.6e-13	Ribosomal protein L6
Ribosomal_L6	PF00347	136 - 210	7.4e-24	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15280
fragaria_vesca	FvH4_6g47953 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48880 FvH4_6g48880
malus_domestica	MD09G1053400.v1.1
prunus_persica	Prupe.3G265200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167491 RchiOBHm_Chr2g0167571 RchiOBHm_Chr2g0167581
rosa_laevigata	RLG00000021724 RLG00000021736
rosa_multiflora	Rmu_sc0000056.1_g000010 Rmu_sc0000056.1_g000011 Rmu_sc0001970.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083370 Rroxscaffold_2G00083410 Rroxscaffold_2G00083440
rosa_rugosa	Rorug02G0530600
rosa_samantha	Rh2AG597900 Rh2AG598800 Rh2AG599200 Rh2AG599300 Rh2AG599400 Rh2BG609400 Rh2BG609800 Rh2BG609900 Rh2BG610000 Rh2CG580300 Rh2DG620700 Rh2DG621000 Rh2DG621100 Rh2DG621900 Rh2DG622000 Rh2DG622100 Rh2DG622600 Rh2DG622700
rosa_wichuraiana	Rw2G049750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	611
AgsI	TTSAA	2 cut(s)	115, 164
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AluBI	AGCT	1 cut(s)	232
AluI	AGCT	1 cut(s)	232
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	2 cut(s)	302, 586
AlwNI	CAGNNNCTG	1 cut(s)	205
AoxI	GGCC	2 cut(s)	217, 318
ApeKI	GCWGC	2 cut(s)	229, 572
AspS9I	GGNCC	2 cut(s)	218, 318
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	2 cut(s)	241, 559
BccI	CCATC	4 cut(s)	475, 477, 488, 587
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BciVI	GTATCC	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	302, 586
BfaI	CTAG	1 cut(s)	431
BfuI	GTATCC	1 cut(s)	385
BisI	GCNGC	2 cut(s)	230, 573
BlsI	GCNGC	2 cut(s)	231, 574
BmgT120I	GGNCC	2 cut(s)	218, 318
BpiI	GAAGAC	1 cut(s)	125
BpmI	CTGGAG	1 cut(s)	582
BsaI	GGTCTC	1 cut(s)	586
Bsc4I	CCNNNNNNNGG	1 cut(s)	611
Bse1I	ACTGG	1 cut(s)	473
BseGI	GGATG	2 cut(s)	469, 486
BseLI	CCNNNNNNNGG	1 cut(s)	611
BseNI	ACTGG	1 cut(s)	473
BseXI	GCAGC	2 cut(s)	241, 559
Bsh1285I	CGRYCG	1 cut(s)	47
BshFI	GGCC	2 cut(s)	219, 320
BsiEI	CGRYCG	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	611
BsmAI	GTCTC	2 cut(s)	302, 586
BsnI	GGCC	2 cut(s)	219, 320
Bso31I	GGTCTC	1 cut(s)	586
Bsp1286I	GDGCHC	1 cut(s)	91
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	2 cut(s)	219, 320
BspTNI	GGTCTC	1 cut(s)	586
BsrI	ACTGG	1 cut(s)	473
BssSI	CACGAG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	249
Bst4CI	ACNGT	3 cut(s)	86, 124, 402
Bst6I	CTCTTC	1 cut(s)	386
BstDEI	CTNAG	1 cut(s)	287
BstF5I	GGATG	2 cut(s)	469, 486
BstMAI	GTCTC	2 cut(s)	302, 586
BstMCI	CGRYCG	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	241, 559
BstV2I	GAAGAC	1 cut(s)	125
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	2 cut(s)	219, 320
BtsCI	GGATG	2 cut(s)	469, 486
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	91, 309
CaiI	CAGNNNCTG	1 cut(s)	205
Cfr13I	GGNCC	2 cut(s)	218, 318
CviJI	RGCY	8 cut(s)	5, 50, 203, 219, 232, 320, 337, 604
CviKI_1	RGCY	8 cut(s)	5, 50, 203, 219, 232, 320, 337, 604
DdeI	CTNAG	1 cut(s)	287
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
Eco31I	GGTCTC	1 cut(s)	586
EcoO109I	RGGNCCY	1 cut(s)	218
FaiI	YATR	7 cut(s)	362, 420, 500, 533, 546, 607, 630
Fnu4HI	GCNGC	2 cut(s)	230, 573
FokI	GGATG	2 cut(s)	456, 493
Fsp4HI	GCNGC	2 cut(s)	230, 573
FspBI	CTAG	1 cut(s)	431
GluI	GCNGC	2 cut(s)	230, 573
GsuI	CTGGAG	1 cut(s)	582
HaeIII	GGCC	2 cut(s)	219, 320
HinfI	GANTC	5 cut(s)	137, 181, 275, 454, 528
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	9 cut(s)	141, 206, 235, 279, 295, 343, 491, 583, 599
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	6 cut(s)	188, 262, 309, 428, 502, 650
HpyCH4III	ACNGT	3 cut(s)	86, 124, 402
HpyCH4V	TGCA	2 cut(s)	95, 331
HpyF3I	CTNAG	1 cut(s)	287
LmnI	GCTCC	1 cut(s)	94
Lsp1109I	GCAGC	2 cut(s)	241, 559
MaeI	CTAG	1 cut(s)	431
MaeIII	GTNAC	2 cut(s)	178, 396
MboII	GAAGA	5 cut(s)	127, 130, 403, 527, 660
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	5 cut(s)	37, 144, 188, 558, 639
MlyI	GAGTC	3 cut(s)	175, 269, 463
MnlI	CCTC	4 cut(s)	265, 387, 432, 606
MslI	CAYNNNNRTG	1 cut(s)	503
NmuCI	GTSAC	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	137, 528
PkrI	GCNGC	2 cut(s)	231, 574
PleI	GAGTC	3 cut(s)	175, 269, 462
PpsI	GAGTC	3 cut(s)	175, 269, 462
PspPI	GGNCC	2 cut(s)	218, 318
PstNI	CAGNNNCTG	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	503
SatI	GCNGC	2 cut(s)	230, 573
Sau96I	GGNCC	2 cut(s)	218, 318
SchI	GAGTC	3 cut(s)	175, 269, 463
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	6 cut(s)	199, 234, 398, 513, 598, 616
SmiMI	CAYNNNNRTG	1 cut(s)	503
Sse9I	AATT	5 cut(s)	37, 144, 188, 558, 639
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	1 cut(s)	431
TaaI	ACNGT	3 cut(s)	86, 124, 402
TaqI	TCGA	2 cut(s)	140, 236
TasI	AATT	5 cut(s)	37, 144, 188, 558, 639
TfiI	GAWTC	2 cut(s)	137, 528
TscAI	CASTG	2 cut(s)	91, 309
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	2 cut(s)	229, 572
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	64, 651
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	2 cut(s)	91, 309
XspI	CTAG	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.