Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002362

Physical Location & Seq

Genomic Coordinates Forward (+)

6029024 .. 6033057

Gene Structure 4034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGATGACAGGCTTAGGCGGGTTTCGGCTCCGAAACCCGAAGATGTGCTTGAATTATTACTGGGTTTTGAATTGCAGTGTGCGCAAGTTGGATTTGAAGCTAGAAAGGTTGAGTCTTTGTGGGGAATTTTCAAGTGGGTTAGTGAAAAAGTTGAGGGTTTTAAGCATAAACCTCAGTCATGTGAGGTCATGGCCTCGATGCTTGTCCGTGTGGGATTGCTTAGAGAAGTTGAAGTCTTGTTTTCCACAACGGGAAGTCAAGGAGTTTTGTTGGATAGTCAAGAAATTTACAGTGATTTGATTAAAGGGTATGTTGGTGTTGGTGAGTTAGATAGGGCCATTTCTCTCTATGATCGAATTAGGGGGCGTGTAGTGCCATCATTGCAGTGTTGTTGTGTTCTACTTCATCAATTGGTGGGAATGAGGAAGACCGAATTGGCGTTTCAAGTTTGTAGTGATATGGCAGAAATGGGTTTTGATTTGAGAGATGTGAAGAAGGCCACATTTGAGGGTGTCATTAGACTGCTTTGCAGGGATGGAAAGATTAAGGAGGCAAGAAACTTTGTCAAGAAGGCTATGACTTTCAAACTCAAGCCTAGCAACTTAGTTTTAAATGAAGTTGCTTATGGATATTGTGAGAAGGACTTTGATGATTTGATGAGCTTCTATGCTGAGATTAAGTGTGCCCCAGAAGTTATGGCTGGGAATAGGATTATGCAGTCTCTTTGTAGCCATTTTGGGACAAGAAGAGCAGAACCTTATCTGCAAGAATTAGAAATTTTAGGCTTCAATCCTGATGAGGTAACCTTTGGAATCATGATTGGCTGGAGCTGTCGTGAACGAAAACTTAAAGTGCCTTTGTTTACCTATCAGAGATGTTGGGAAGACTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048037 GO:0051536 GO:0051540 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

297

Amino Acids

33.93

Weight (kDa)

6.38

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15280
fragaria_vesca	FvH4_6g47953 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48880 FvH4_6g48880
malus_domestica	MD09G1053400.v1.1
prunus_persica	Prupe.3G265200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167491 RchiOBHm_Chr2g0167571 RchiOBHm_Chr2g0167581
rosa_laevigata	RLG00000021724 RLG00000021736
rosa_multiflora	Rmu_sc0000056.1_g000010 Rmu_sc0000056.1_g000011 Rmu_sc0001970.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083370 Rroxscaffold_2G00083410 Rroxscaffold_2G00083440
rosa_rugosa	Rorug02G0530600
rosa_samantha	Rh2AG597900 Rh2AG598800 Rh2AG599200 Rh2AG599300 Rh2AG599400 Rh2BG609400 Rh2BG609800 Rh2BG609900 Rh2BG610000 Rh2CG580300 Rh2DG620700 Rh2DG621000 Rh2DG621100 Rh2DG621900 Rh2DG622000 Rh2DG622100 Rh2DG622600 Rh2DG622700
rosa_wichuraiana	Rw2G049750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	84
AciI	CCGC	1 cut(s)	19
AcsI	RAATTY	3 cut(s)	126, 285, 777
AgsI	TTSAA	8 cut(s)	53, 71, 98, 133, 233, 446, 586, 790
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AluBI	AGCT	3 cut(s)	101, 663, 831
AluI	AGCT	3 cut(s)	101, 663, 831
Alw26I	GTCTC	1 cut(s)	726
AoxI	GGCC	3 cut(s)	192, 336, 498
ApoI	RAATTY	3 cut(s)	126, 285, 777
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	336
AsuHPI	GGTGA	1 cut(s)	335
BaeGI	GKGCMC	1 cut(s)	688
BbsI	GAAGAC	1 cut(s)	434
BccI	CCATC	2 cut(s)	385, 530
BcoDI	GTCTC	1 cut(s)	726
BfaI	CTAG	2 cut(s)	102, 597
BmgT120I	GGNCC	1 cut(s)	336
BmiI	GGNNCC	1 cut(s)	30
BmrI	ACTGGG	1 cut(s)	71
BmsI	GCATC	1 cut(s)	189
BmuI	ACTGGG	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	434
BpmI	CTGGAG	1 cut(s)	847
Bpu10I	CCTNAGC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	575
BsaXI	ACNNNNNCTCC	2 cut(s)	820, 850
Bse1I	ACTGG	1 cut(s)	66
Bse3DI	GCAATG	1 cut(s)	380
BseGI	GGATG	2 cut(s)	10, 541
BseMI	GCAATG	1 cut(s)	380
BseMII	CTCAG	2 cut(s)	188, 663
BseNI	ACTGG	1 cut(s)	66
BseSI	GKGCMC	1 cut(s)	688
BseYI	CCCAGC	1 cut(s)	701
BshFI	GGCC	3 cut(s)	194, 338, 500
BslFI	GGGAC	1 cut(s)	754
BsmAI	GTCTC	1 cut(s)	726
BsmFI	GGGAC	1 cut(s)	754
BsnI	GGCC	3 cut(s)	194, 338, 500
Bsp1286I	GDGCHC	1 cut(s)	688
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	3 cut(s)	194, 338, 500
BspCNI	CTCAG	2 cut(s)	187, 664
BspHI	TCATGA	1 cut(s)	816
BspLI	GGNNCC	1 cut(s)	30
BspQI	GCTCTTC	1 cut(s)	742
BsrDI	GCAATG	1 cut(s)	380
BsrI	ACTGG	1 cut(s)	66
BssMI	GATC	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	742
BstDEI	CTNAG	5 cut(s)	14, 174, 221, 604, 672
BstEII	GGTNACC	1 cut(s)	802
BstF5I	GGATG	2 cut(s)	10, 541
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	1 cut(s)	726
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 373, 382
BstPI	GGTNACC	1 cut(s)	802
BstSLI	GKGCMC	1 cut(s)	688
BstV2I	GAAGAC	1 cut(s)	434
BsuRI	GGCC	3 cut(s)	194, 338, 500
BtsCI	GGATG	2 cut(s)	10, 541
BtsI	GCAGTG	2 cut(s)	83, 392
BtsIMutI	CAGTG	3 cut(s)	83, 298, 392
CciI	TCATGA	1 cut(s)	816
CfoI	GCGC	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	336
CviAII	CATG	3 cut(s)	180, 190, 817
DdeI	CTNAG	5 cut(s)	14, 174, 221, 604, 672
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
DraI	TTTAAA	1 cut(s)	612
Eam1104I	CTCTTC	1 cut(s)	742
EarI	CTCTTC	1 cut(s)	742
Eco91I	GGTNACC	1 cut(s)	802
EcoO65I	GGTNACC	1 cut(s)	802
FaeI	CATG	3 cut(s)	183, 193, 820
FalI	AAGNNNNNCTT	2 cut(s)	33, 65
FaqI	GGGAC	1 cut(s)	754
FatI	CATG	3 cut(s)	179, 189, 816
FauI	CCCGC	1 cut(s)	12
FokI	GGATG	2 cut(s)	17, 548
FspBI	CTAG	2 cut(s)	102, 597
FspI	TGCGCA	1 cut(s)	84
GlaI	GCGC	1 cut(s)	84
GsaI	CCCAGC	1 cut(s)	705
GsuI	CTGGAG	1 cut(s)	847
HaeIII	GGCC	3 cut(s)	194, 338, 500
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	3 cut(s)	183, 193, 820
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	3 cut(s)	113, 813, 887
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	2 cut(s)	839, 864
Hpy188I	TCNGA	2 cut(s)	33, 873
Hpy188III	TCNNGA	5 cut(s)	281, 568, 794, 817, 836
Hpy8I	GTNNAC	2 cut(s)	839, 864
HpyAV	CCTTC	3 cut(s)	490, 565, 634
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4V	TGCA	5 cut(s)	76, 385, 531, 718, 766
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 373, 382
HpyF3I	CTNAG	5 cut(s)	14, 174, 221, 604, 672
Hsp92II	CATG	3 cut(s)	183, 193, 820
HspAI	GCGC	1 cut(s)	83
Kzo9I	GATC	1 cut(s)	352
LguI	GCTCTTC	1 cut(s)	742
LmnI	GCTCC	2 cut(s)	34, 828
LpnPI	CCDG	6 cut(s)	47, 517, 687, 702, 807, 811
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	2 cut(s)	102, 597
MaeIII	GTNAC	1 cut(s)	802
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	4 cut(s)	53, 439, 505, 759
MfeI	CAATTG	1 cut(s)	410
MhlI	GDGCHC	1 cut(s)	688
MluCI	AATT	9 cut(s)	53, 71, 126, 285, 357, 410, 434, 770, 777
MlyI	GAGTC	2 cut(s)	122, 881
MmeI	TCCRAC	2 cut(s)	70, 252
MnlI	CCTC	8 cut(s)	148, 178, 183, 205, 417, 502, 544, 793
MseI	TTAA	6 cut(s)	162, 303, 546, 611, 678, 849
MslI	CAYNNNNRTG	1 cut(s)	385
MunI	CAATTG	1 cut(s)	410
MwoI	GCNNNNNNNGC	3 cut(s)	82, 373, 382
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	3 cut(s)	183, 193, 820
NlaIV	GGNNCC	1 cut(s)	30
NsbI	TGCGCA	1 cut(s)	84
PagI	TCATGA	1 cut(s)	816
PciSI	GCTCTTC	1 cut(s)	742
PfeI	GAWTC	1 cut(s)	813
PleI	GAGTC	2 cut(s)	121, 881
PpsI	GAGTC	2 cut(s)	121, 881
PspEI	GGTNACC	1 cut(s)	802
PspFI	CCCAGC	1 cut(s)	701
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	336
RseI	CAYNNNNRTG	1 cut(s)	385
SapI	GCTCTTC	1 cut(s)	742
SaqAI	TTAA	6 cut(s)	162, 303, 546, 611, 678, 849
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	1 cut(s)	336
SchI	GAGTC	2 cut(s)	122, 881
SduI	GDGCHC	1 cut(s)	688
SfaNI	GCATC	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	385
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	9 cut(s)	53, 71, 126, 285, 357, 410, 434, 770, 777
SsiI	CCGC	1 cut(s)	19
SspMI	CTAG	2 cut(s)	102, 597
TaaI	ACNGT	1 cut(s)	293
TaqI	TCGA	2 cut(s)	197, 355
TaqII	GACCGA	1 cut(s)	446
TasI	AATT	9 cut(s)	53, 71, 126, 285, 357, 410, 434, 770, 777
TfiI	GAWTC	1 cut(s)	813
Tru1I	TTAA	6 cut(s)	162, 303, 546, 611, 678, 849
Tru9I	TTAA	6 cut(s)	162, 303, 546, 611, 678, 849
TscAI	CASTG	3 cut(s)	83, 298, 392
TspDTI	ATGAA	2 cut(s)	395, 630
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	3 cut(s)	83, 298, 392
XapI	RAATTY	3 cut(s)	126, 285, 777
XspI	CTAG	2 cut(s)	102, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.