Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002362

Physical Location & Seq

Genomic Coordinates Reverse (-)

83098321 .. 83098950

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG609900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCAAGCCATGGACTGATTCAAAACTCTTCGGATGAGGATCCGCTATCCAAAGCATTTATGGTTCTGGGTTTCAAGCCATTAGCTGTGACATTGAAGAGAGATAATGATGTTGAGTTTGCTAAAACAGAGTTTTATGATGATCTTGGGAATGGACTTTATTTGGATACAGACCTGGATAAGTATGAGAAAAGAATCACTGGGATCCTAGAAGATTGCATGGTACCTGATTTTTACTCTCTTATGATGAAAGAATGCACTCTTGGAAATTTGAAGGGTGCATTGGTTTTGGTAGATGAAATGATCCGGTGGGGACAAGATTTGTCATTGTCTATGATGTCCGACTTACTGAAAGGGCTTTCTGCATCCCATTTACATACCAAGGGAATCACCAGCATTGTAGATAAAAAGCTTCACTTGGTAAATCAGCTAGACCAAGAAACTCTAAACTTTCTTGCCCAAGCATACGGCAAGAAAGGATTGACATATAATACAAGGATAGTGGTGAATGGAATGATAGAAAGGCATCTGAAAATCAACAATGAGACTTACACTGCTTTAGTAAAAGGTTTTTGTAAGAAAGGAAACTTTGAGGGAGCTGAATGCTTGTTGGAATATTGCTCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048037 GO:0051536 GO:0051540 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

209

Amino Acids

23.49

Weight (kDa)

5.56

Isoelectric Point (pI)

20.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	176 - 205	8e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15280
fragaria_vesca	FvH4_6g47953 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48880 FvH4_6g48880
malus_domestica	MD09G1053400.v1.1
prunus_persica	Prupe.3G265200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167491 RchiOBHm_Chr2g0167571 RchiOBHm_Chr2g0167581
rosa_laevigata	RLG00000021724 RLG00000021736
rosa_multiflora	Rmu_sc0000056.1_g000010 Rmu_sc0000056.1_g000011 Rmu_sc0001970.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083370 Rroxscaffold_2G00083410 Rroxscaffold_2G00083440
rosa_rugosa	Rorug02G0530600
rosa_samantha	Rh2AG597900 Rh2AG598800 Rh2AG599200 Rh2AG599300 Rh2AG599400 Rh2BG609400 Rh2BG609800 Rh2BG609900 Rh2BG610000 Rh2CG580300 Rh2DG620700 Rh2DG621000 Rh2DG621100 Rh2DG621900 Rh2DG622000 Rh2DG622100 Rh2DG622600 Rh2DG622700
rosa_wichuraiana	Rw2G049750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	223
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	5 cut(s)	35, 48, 199, 212, 298
AcsI	RAATTY	1 cut(s)	268
AfaI	GTAC	1 cut(s)	225
AgsI	TTSAA	4 cut(s)	23, 76, 97, 274
AjnI	CCWGG	1 cut(s)	174
AjuI	GAANNNNNNNTTGG	4 cut(s)	246, 266, 278, 298
AluBI	AGCT	4 cut(s)	86, 412, 430, 599
AluI	AGCT	4 cut(s)	86, 412, 430, 599
Alw26I	GTCTC	1 cut(s)	539
AlwI	GGATC	5 cut(s)	35, 48, 199, 212, 298
ApoI	RAATTY	1 cut(s)	268
Asp718I	GGTACC	1 cut(s)	223
AsuHPI	GGTGA	2 cut(s)	382, 517
BamHI	GGATCC	2 cut(s)	40, 204
BanI	GGYRCC	1 cut(s)	223
BceAI	ACGGC	1 cut(s)	484
BciT130I	CCWGG	1 cut(s)	176
BciVI	GTATCC	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	539
BfaI	CTAG	2 cut(s)	209, 431
BfuI	GTATCC	1 cut(s)	160
Bme1390I	CCNGG	1 cut(s)	176
BmiI	GGNNCC	3 cut(s)	42, 206, 225
BmrFI	CCNGG	1 cut(s)	176
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	2 cut(s)	374, 535
BmuI	ACTGGG	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	10, 381
BsaWI	WCCGGW	1 cut(s)	306
Bse1I	ACTGG	1 cut(s)	205
Bse8I	GATNNNNATC	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	10, 381
BseGI	GGATG	2 cut(s)	40, 365
BseJI	GATNNNNATC	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	205
BshNI	GGYRCC	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	307
BslFI	GGGAC	1 cut(s)	327
BsmAI	GTCTC	1 cut(s)	539
BsmFI	GGGAC	1 cut(s)	327
BsmI	GAATGC	2 cut(s)	260, 608
Bsp143I	GATC	4 cut(s)	40, 142, 204, 303
Bsp19I	CCATGG	1 cut(s)	10
BspACI	CCGC	1 cut(s)	44
BspLI	GGNNCC	3 cut(s)	42, 206, 225
BspPI	GGATC	5 cut(s)	35, 48, 199, 212, 298
BspT107I	GGYRCC	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	10, 381
BssMI	GATC	4 cut(s)	40, 142, 204, 303
BssT1I	CCWWGG	2 cut(s)	10, 381
Bst2UI	CCWGG	1 cut(s)	176
Bst6I	CTCTTC	2 cut(s)	34, 92
BstC8I	GCNNGC	1 cut(s)	7
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	40, 365
BstKTI	GATC	4 cut(s)	43, 145, 207, 306
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	4 cut(s)	40, 142, 204, 303
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	174
BstX2I	RGATCY	2 cut(s)	40, 204
BstYI	RGATCY	2 cut(s)	40, 204
BsuI	GTATCC	1 cut(s)	160
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	40, 365
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	2 cut(s)	198, 552
Cac8I	GCNNGC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	224
CspCI	CAANNNNNGTGG	2 cut(s)	483, 518
CviAII	CATG	2 cut(s)	11, 220
CviJI	RGCY	7 cut(s)	9, 79, 86, 358, 412, 430, 599
CviKI_1	RGCY	7 cut(s)	9, 79, 86, 358, 412, 430, 599
CviQI	GTAC	1 cut(s)	224
DpnI	GATC	4 cut(s)	42, 144, 206, 305
DpnII	GATC	4 cut(s)	40, 142, 204, 303
Eam1104I	CTCTTC	2 cut(s)	34, 92
EarI	CTCTTC	2 cut(s)	34, 92
Eco130I	CCWWGG	2 cut(s)	10, 381
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	2 cut(s)	10, 381
ErhI	CCWWGG	2 cut(s)	10, 381
FaeI	CATG	2 cut(s)	14, 223
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FaqI	GGGAC	1 cut(s)	327
FatI	CATG	2 cut(s)	10, 219
FokI	GGATG	2 cut(s)	47, 352
FspBI	CTAG	2 cut(s)	209, 431
HapII	CCGG	1 cut(s)	307
Hin1II	CATG	2 cut(s)	14, 223
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	3 cut(s)	19, 195, 387
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	2 cut(s)	382, 517
Hpy188I	TCNGA	3 cut(s)	34, 343, 531
HpyAV	CCTTC	1 cut(s)	268
HpyCH4V	TGCA	4 cut(s)	219, 258, 281, 365
Hsp92II	CATG	2 cut(s)	14, 223
KpnI	GGTACC	1 cut(s)	227
Kzo9I	GATC	4 cut(s)	40, 142, 204, 303
LmnI	GCTCC	1 cut(s)	596
LpnPI	CCDG	7 cut(s)	53, 161, 186, 188, 240, 320, 406
LweI	GCATC	2 cut(s)	374, 535
MaeI	CTAG	2 cut(s)	209, 431
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	4 cut(s)	42, 144, 206, 305
MboI	GATC	4 cut(s)	40, 142, 204, 303
MboII	GAAGA	3 cut(s)	21, 109, 224
MflI	RGATCY	2 cut(s)	40, 204
MluCI	AATT	1 cut(s)	268
MmeI	TCCRAC	2 cut(s)	366, 591
MnlI	CCTC	2 cut(s)	31, 586
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	1 cut(s)	176
Mva1269I	GAATGC	2 cut(s)	260, 608
MvaI	CCWGG	1 cut(s)	176
NcoI	CCATGG	1 cut(s)	10
NdeII	GATC	4 cut(s)	40, 142, 204, 303
NlaIII	CATG	2 cut(s)	14, 223
NlaIV	GGNNCC	3 cut(s)	42, 206, 225
NmuCI	GTSAC	1 cut(s)	88
PctI	GAATGC	2 cut(s)	260, 608
PfeI	GAWTC	3 cut(s)	19, 195, 387
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	3 cut(s)	42, 206, 225
PsuI	RGATCY	2 cut(s)	40, 204
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
Sau3AI	GATC	4 cut(s)	40, 142, 204, 303
ScrFI	CCNGG	1 cut(s)	176
SetI	ASST	7 cut(s)	88, 177, 229, 414, 432, 571, 601
SfaNI	GCATC	2 cut(s)	374, 535
Sse9I	AATT	1 cut(s)	268
SsiI	CCGC	1 cut(s)	44
SspI	AATATT	1 cut(s)	617
SspMI	CTAG	2 cut(s)	209, 431
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	2 cut(s)	10, 381
TasI	AATT	1 cut(s)	268
TfiI	GAWTC	3 cut(s)	19, 195, 387
TscAI	CASTG	2 cut(s)	205, 559
TseFI	GTSAC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	263, 312
TspRI	CASTG	2 cut(s)	205, 559
XapI	RAATTY	1 cut(s)	268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58
XspI	CTAG	2 cut(s)	209, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.