Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002362

Physical Location & Seq

Genomic Coordinates Reverse (-)

82884289 .. 82885023

Gene Structure 735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG599300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGTAGATAGGGGGACTACACCTGATTTGTCGACTTTCAGGATTCTCTTAGCAGGCTATTTTAAAGTTAGAAAATTTGTTGAAGCCAAAAGGATAGTTTTTGATATGGCAAGCCATGGACTGATTCAAAACTCTTCAGATGAGGATCCGCTATCCAAAGCATTTATGGTTCTGGGTTTCAAGCCATTAGCTGTGACATTGAAGAGAGATAATGATGTTGGGTTTGCTAAAACAGAGTTTTATGATGATCTTGGGAATGGACTTTATTTGGATACAGACCTGGATAAGTATGAGAAAAGAATCACTGGGATCCTAGAAGATTGCATGGTCCCTGATTTTTACTCTCTTATGATGAAAGAATGCACTCTTGGAAATTTGAAGGGTGCATTGGTTTTGGTAGATGAAATGATCCGGTGGAGACAAGATTTGTCATTGTCTATGGTGTCCGACTTACTGAAAGGGCTTTCTGCATCCCATTTACATACCAAGGGAATCACCAGCATTGTAGATAAAAAGCTTCACTTGGTAAATCAGCTAGACCAAGAAACTCTAAACTTTCTTGCCCAAGCATACGGCAAGAAAGGATTGACATATAATACAAGGATAGTGGTGAATGGAATGATAGAAAGGCATCTGAAAATCAACAATGAGACTTACACTGCTTTAGTAAAAGGTTTTTGTAAGAAAGGAAACTTTGAGGGAGCTGAATGCTTGCTGGAATATTGCTCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048037 GO:0051536 GO:0051540 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

244

Amino Acids

27.56

Weight (kDa)

6.95

Isoelectric Point (pI)

17.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	211 - 240	1e-05	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15280
fragaria_vesca	FvH4_6g47953 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48880 FvH4_6g48880
malus_domestica	MD09G1053400.v1.1
prunus_persica	Prupe.3G265200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167491 RchiOBHm_Chr2g0167571 RchiOBHm_Chr2g0167581
rosa_laevigata	RLG00000021724 RLG00000021736
rosa_multiflora	Rmu_sc0000056.1_g000010 Rmu_sc0000056.1_g000011 Rmu_sc0001970.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083370 Rroxscaffold_2G00083410 Rroxscaffold_2G00083440
rosa_rugosa	Rorug02G0530600
rosa_samantha	Rh2AG597900 Rh2AG598800 Rh2AG599200 Rh2AG599300 Rh2AG599400 Rh2BG609400 Rh2BG609800 Rh2BG609900 Rh2BG610000 Rh2CG580300 Rh2DG620700 Rh2DG621000 Rh2DG621100 Rh2DG621900 Rh2DG622000 Rh2DG622100 Rh2DG622600 Rh2DG622700
rosa_wichuraiana	Rw2G049750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	32
AciI	CCGC	1 cut(s)	149
AclWI	GGATC	5 cut(s)	140, 153, 304, 317, 403
AcsI	RAATTY	2 cut(s)	74, 373
AcuI	CTGAAG	1 cut(s)	120
AgsI	TTSAA	5 cut(s)	83, 128, 181, 202, 379
AjnI	CCWGG	1 cut(s)	279
AjuI	GAANNNNNNNTTGG	4 cut(s)	351, 371, 383, 403
AluBI	AGCT	4 cut(s)	191, 517, 535, 704
AluI	AGCT	4 cut(s)	191, 517, 535, 704
Alw26I	GTCTC	2 cut(s)	412, 644
AlwI	GGATC	5 cut(s)	140, 153, 304, 317, 403
ApoI	RAATTY	2 cut(s)	74, 373
AspS9I	GGNCC	1 cut(s)	328
AsuHPI	GGTGA	2 cut(s)	487, 622
AvaII	GGWCC	1 cut(s)	328
BamHI	GGATCC	2 cut(s)	145, 309
BceAI	ACGGC	1 cut(s)	589
BciT130I	CCWGG	1 cut(s)	281
BciVI	GTATCC	1 cut(s)	265
BcoDI	GTCTC	2 cut(s)	412, 644
BfaI	CTAG	2 cut(s)	314, 536
BfuI	GTATCC	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	1 cut(s)	328
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	3 cut(s)	147, 311, 330
BmrFI	CCNGG	1 cut(s)	281
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	2 cut(s)	479, 640
BmuI	ACTGGG	1 cut(s)	315
BsaBI	GATNNNNATC	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	115, 486
BsaWI	WCCGGW	1 cut(s)	411
Bse1I	ACTGG	1 cut(s)	310
Bse8I	GATNNNNATC	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	115, 486
BseGI	GGATG	1 cut(s)	470
BseJI	GATNNNNATC	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	412
BslFI	GGGAC	2 cut(s)	28, 314
BsmAI	GTCTC	2 cut(s)	412, 644
BsmFI	GGGAC	2 cut(s)	28, 314
BsmI	GAATGC	2 cut(s)	365, 713
Bsp143I	GATC	4 cut(s)	145, 247, 309, 408
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	1 cut(s)	149
BspLI	GGNNCC	3 cut(s)	147, 311, 330
BspPI	GGATC	5 cut(s)	140, 153, 304, 317, 403
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	2 cut(s)	115, 486
BssMI	GATC	4 cut(s)	145, 247, 309, 408
BssT1I	CCWWGG	2 cut(s)	115, 486
Bst2UI	CCWGG	1 cut(s)	281
Bst6I	CTCTTC	2 cut(s)	139, 197
BstC8I	GCNNGC	3 cut(s)	55, 112, 713
BstDEI	CTNAG	1 cut(s)	49
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	470
BstKTI	GATC	4 cut(s)	148, 250, 312, 411
BstMAI	GTCTC	2 cut(s)	412, 644
BstMBI	GATC	4 cut(s)	145, 247, 309, 408
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BstX2I	RGATCY	2 cut(s)	145, 309
BstYI	RGATCY	2 cut(s)	145, 309
BsuI	GTATCC	1 cut(s)	265
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	470
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	2 cut(s)	303, 657
Cac8I	GCNNGC	3 cut(s)	55, 112, 713
Cfr13I	GGNCC	1 cut(s)	328
CspCI	CAANNNNNGTGG	2 cut(s)	588, 623
CviAII	CATG	2 cut(s)	116, 325
CviJI	RGCY	9 cut(s)	57, 86, 114, 184, 191, 463, 517, 535, 704
CviKI_1	RGCY	9 cut(s)	57, 86, 114, 184, 191, 463, 517, 535, 704
DdeI	CTNAG	1 cut(s)	49
DpnI	GATC	4 cut(s)	147, 249, 311, 410
DpnII	GATC	4 cut(s)	145, 247, 309, 408
DraI	TTTAAA	1 cut(s)	64
Eam1104I	CTCTTC	2 cut(s)	139, 197
EarI	CTCTTC	2 cut(s)	139, 197
Eco130I	CCWWGG	2 cut(s)	115, 486
Eco47I	GGWCC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	2 cut(s)	115, 486
ErhI	CCWWGG	2 cut(s)	115, 486
FaeI	CATG	2 cut(s)	119, 328
FalI	AAGNNNNNCTT	2 cut(s)	506, 538
FaqI	GGGAC	2 cut(s)	28, 314
FatI	CATG	2 cut(s)	115, 324
FblI	GTMKAC	1 cut(s)	32
FokI	GGATG	1 cut(s)	457
FspBI	CTAG	2 cut(s)	314, 536
HapII	CCGG	1 cut(s)	412
Hin1II	CATG	2 cut(s)	119, 328
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	4 cut(s)	43, 124, 300, 492
HpaII	CCGG	1 cut(s)	412
HphI	GGTGA	2 cut(s)	487, 622
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	3 cut(s)	139, 448, 636
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	33
HpyAV	CCTTC	1 cut(s)	373
HpyCH4V	TGCA	4 cut(s)	324, 363, 386, 470
HpyF3I	CTNAG	1 cut(s)	49
Hsp92II	CATG	2 cut(s)	119, 328
Kzo9I	GATC	4 cut(s)	145, 247, 309, 408
LmnI	GCTCC	1 cut(s)	701
LweI	GCATC	2 cut(s)	479, 640
MaeI	CTAG	2 cut(s)	314, 536
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	4 cut(s)	147, 249, 311, 410
MboI	GATC	4 cut(s)	145, 247, 309, 408
MboII	GAAGA	3 cut(s)	126, 214, 329
MflI	RGATCY	2 cut(s)	145, 309
MluCI	AATT	2 cut(s)	74, 373
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	2 cut(s)	136, 691
MseI	TTAA	1 cut(s)	63
MspI	CCGG	1 cut(s)	412
MspR9I	CCNGG	1 cut(s)	281
Mva1269I	GAATGC	2 cut(s)	365, 713
MvaI	CCWGG	1 cut(s)	281
NcoI	CCATGG	1 cut(s)	115
NdeII	GATC	4 cut(s)	145, 247, 309, 408
NlaIII	CATG	2 cut(s)	119, 328
NlaIV	GGNNCC	3 cut(s)	147, 311, 330
NmuCI	GTSAC	1 cut(s)	193
PctI	GAATGC	2 cut(s)	365, 713
PfeI	GAWTC	4 cut(s)	43, 124, 300, 492
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	3 cut(s)	147, 311, 330
PspPI	GGNCC	1 cut(s)	328
PsuI	RGATCY	2 cut(s)	145, 309
SalI	GTCGAC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	4 cut(s)	145, 247, 309, 408
Sau96I	GGNCC	1 cut(s)	328
ScrFI	CCNGG	1 cut(s)	281
SetI	ASST	7 cut(s)	25, 193, 282, 519, 537, 676, 706
SfaNI	GCATC	2 cut(s)	479, 640
SinI	GGWCC	1 cut(s)	328
Sse9I	AATT	2 cut(s)	74, 373
SsiI	CCGC	1 cut(s)	149
SspI	AATATT	1 cut(s)	722
SspMI	CTAG	2 cut(s)	314, 536
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	2 cut(s)	115, 486
TaqI	TCGA	1 cut(s)	32
TasI	AATT	2 cut(s)	74, 373
TfiI	GAWTC	4 cut(s)	43, 124, 300, 492
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	2 cut(s)	310, 664
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	368, 417
TspRI	CASTG	2 cut(s)	310, 664
VpaK11BI	GGWCC	1 cut(s)	328
XapI	RAATTY	2 cut(s)	74, 373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	32
XspI	CTAG	2 cut(s)	314, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.