Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002362

Physical Location & Seq

Genomic Coordinates Reverse (-)

85255619 .. 85256038

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG622600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAGGGTATGTGGAAGCATGCTGGGAAGGTGTTTGATGAGATGGTAGATAGGGGGACTACACCTGATTTGTCGACTTTCAGGATTCTCTTAGCAGGCTATTGTAAAGTTAGAAAATTTGATGAAGCCAAAAGGATAGTTTTTGATATGGCAAGCCATGGACTGATTCAAAACTCTTCAGATGAGGATCCGCTATCCAAAGCATTTATGGTTCTGGGTTTCAAGCCATTAGTTGTGACATTGAAGAGAGATAATGGTGTTGGGTTTGCTAAAACAGAGTTTTATGATAATCTTGGGAATGGACTTTATTTGGATACAGACCTGGATAAGTATGAGAAAAGAATCACTGGGATCCTAGAAGATTGCATGGTACCTGATTTTTACTCTCTTATGATGAAAGAATGCACTCTTGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048037 GO:0051536 GO:0051540 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

139

Amino Acids

15.78

Weight (kDa)

5.17

Isoelectric Point (pI)

26.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	2 - 36	8.2e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15280
fragaria_vesca	FvH4_6g47953 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48880 FvH4_6g48880
malus_domestica	MD09G1053400.v1.1
prunus_persica	Prupe.3G265200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167491 RchiOBHm_Chr2g0167571 RchiOBHm_Chr2g0167581
rosa_laevigata	RLG00000021724 RLG00000021736
rosa_multiflora	Rmu_sc0000056.1_g000010 Rmu_sc0000056.1_g000011 Rmu_sc0001970.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083370 Rroxscaffold_2G00083410 Rroxscaffold_2G00083440
rosa_rugosa	Rorug02G0530600
rosa_samantha	Rh2AG597900 Rh2AG598800 Rh2AG599200 Rh2AG599300 Rh2AG599400 Rh2BG609400 Rh2BG609800 Rh2BG609900 Rh2BG610000 Rh2CG580300 Rh2DG620700 Rh2DG621000 Rh2DG621100 Rh2DG621900 Rh2DG622000 Rh2DG622100 Rh2DG622600 Rh2DG622700
rosa_wichuraiana	Rw2G049750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	370
AccB1I	GGYRCC	1 cut(s)	370
AccI	GTMKAC	1 cut(s)	74
AciI	CCGC	1 cut(s)	191
AclWI	GGATC	4 cut(s)	182, 195, 346, 359
AcsI	RAATTY	2 cut(s)	116, 414
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	1 cut(s)	372
AgsI	TTSAA	3 cut(s)	170, 223, 244
AjnI	CCWGG	1 cut(s)	321
AjuI	GAANNNNNNNTTGG	1 cut(s)	393
AlwI	GGATC	4 cut(s)	182, 195, 346, 359
ApoI	RAATTY	2 cut(s)	116, 414
Asp718I	GGTACC	1 cut(s)	370
BamHI	GGATCC	2 cut(s)	187, 351
BanI	GGYRCC	1 cut(s)	370
BccI	CCATC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	323
BciVI	GTATCC	1 cut(s)	307
BfaI	CTAG	1 cut(s)	356
BfuI	GTATCC	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	323
BmiI	GGNNCC	3 cut(s)	189, 353, 372
BmrFI	CCNGG	1 cut(s)	323
BmrI	ACTGGG	1 cut(s)	357
BmuI	ACTGGG	1 cut(s)	357
BsaBI	GATNNNNATC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	157
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	352
Bse8I	GATNNNNATC	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	157
BseJI	GATNNNNATC	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	352
BseYI	CCCAGC	1 cut(s)	23
BshNI	GGYRCC	1 cut(s)	370
BslFI	GGGAC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	70
BsmI	GAATGC	1 cut(s)	407
Bsp143I	GATC	2 cut(s)	187, 351
Bsp19I	CCATGG	1 cut(s)	157
BspACI	CCGC	1 cut(s)	191
BspLI	GGNNCC	3 cut(s)	189, 353, 372
BspPI	GGATC	4 cut(s)	182, 195, 346, 359
BspT107I	GGYRCC	1 cut(s)	370
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	2 cut(s)	187, 351
BssT1I	CCWWGG	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	323
Bst6I	CTCTTC	2 cut(s)	181, 239
BstC8I	GCNNGC	3 cut(s)	21, 97, 154
BstDEI	CTNAG	1 cut(s)	91
BstDSI	CCRYGG	1 cut(s)	157
BstKTI	GATC	2 cut(s)	190, 354
BstMBI	GATC	2 cut(s)	187, 351
BstNI	CCWGG	1 cut(s)	323
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	321
BstX2I	RGATCY	2 cut(s)	187, 351
BstYI	RGATCY	2 cut(s)	187, 351
BsuI	GTATCC	1 cut(s)	307
BtgI	CCRYGG	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	3 cut(s)	21, 97, 154
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	3 cut(s)	20, 158, 367
CviJI	RGCY	4 cut(s)	99, 128, 156, 226
CviKI_1	RGCY	4 cut(s)	99, 128, 156, 226
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	1 cut(s)	91
DpnI	GATC	2 cut(s)	189, 353
DpnII	GATC	2 cut(s)	187, 351
Eam1104I	CTCTTC	2 cut(s)	181, 239
EarI	CTCTTC	2 cut(s)	181, 239
Eco130I	CCWWGG	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	3 cut(s)	23, 161, 370
FaiI	YATR	9 cut(s)	11, 21, 149, 159, 209, 285, 333, 368, 392
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	3 cut(s)	19, 157, 366
FblI	GTMKAC	1 cut(s)	74
FspBI	CTAG	1 cut(s)	356
GsaI	CCCAGC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	23, 161, 370
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HinfI	GANTC	3 cut(s)	85, 166, 342
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	1 cut(s)	75
HpyAV	CCTTC	1 cut(s)	22
HpyCH4V	TGCA	2 cut(s)	366, 405
HpyF3I	CTNAG	1 cut(s)	91
Hsp92II	CATG	3 cut(s)	23, 161, 370
KpnI	GGTACC	1 cut(s)	374
Kzo9I	GATC	2 cut(s)	187, 351
LpnPI	CCDG	9 cut(s)	9, 67, 78, 81, 200, 308, 333, 335, 387
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	2 cut(s)	189, 353
MboI	GATC	2 cut(s)	187, 351
MboII	GAAGA	3 cut(s)	168, 256, 371
MflI	RGATCY	2 cut(s)	187, 351
MluCI	AATT	2 cut(s)	116, 414
MnlI	CCTC	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	323
Mva1269I	GAATGC	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	323
NcoI	CCATGG	1 cut(s)	157
NdeII	GATC	2 cut(s)	187, 351
NlaIII	CATG	3 cut(s)	23, 161, 370
NlaIV	GGNNCC	3 cut(s)	189, 353, 372
NmuCI	GTSAC	1 cut(s)	235
NspI	RCATGY	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	23
PctI	GAATGC	1 cut(s)	407
PfeI	GAWTC	3 cut(s)	85, 166, 342
Psp6I	CCWGG	1 cut(s)	321
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	3 cut(s)	189, 353, 372
PsuI	RGATCY	2 cut(s)	187, 351
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SalI	GTCGAC	1 cut(s)	73
Sau3AI	GATC	2 cut(s)	187, 351
ScrFI	CCNGG	1 cut(s)	323
SetI	ASST	4 cut(s)	33, 67, 324, 376
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	2 cut(s)	116, 414
SsiI	CCGC	1 cut(s)	191
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	157
TaqI	TCGA	1 cut(s)	74
TasI	AATT	2 cut(s)	116, 414
TfiI	GAWTC	3 cut(s)	85, 166, 342
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	138, 410
TspRI	CASTG	1 cut(s)	352
XapI	RAATTY	2 cut(s)	116, 414
XceI	RCATGY	1 cut(s)	23
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
XmiI	GTMKAC	1 cut(s)	74
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.