Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002362

Physical Location & Seq

Genomic Coordinates Forward (+)

6103608 .. 6113027

Gene Structure 9420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2943 bp

ATGGCTAGCTCCTCAGCGCTTCCCTCTGTTTCTGTTTACTATATTGGCATTGAGAACGGAACCAATCATACTGTGCTTCAAACTGCTGCAAGTCATCTCCGTCTACAGTTTGACATTTCTGTGGGGACTGGTTCCACGCTGGCAGATGCTTGGGCAACCATGAGCAAGGAAAGGAGGTCCGGCCAGCCTACAAAACTTCTGATCATTGATATGGATTTTATCTTCGAGTTCGACCAGGAATCACGCGGGAAGAGTAAGGGCAAAGACTTTGCCAATGCTTCTCTAAAAGACCTTCTTTTGGAGATTTCTGATTTAGTGCCTGAACAAACTCGTAGGCTTAGGCGGGTTTCGGGGCCGAAACCCGAAGATGTGCTTGAATTATTACTGGGTTTTGAATTGCAGTGTGCGCAAGTTGGATTTGAAGCTAGAAAGGTTGAGTCTTTGTGGGGAATTTTCAAGTGGGTTTGTGAAAAAGTTGAGGGCTTTAAGCATAAACCTCAGTCATGTGAGGTCATGGCCTCGTTGCTTCTCCGAGTGGGATTGCTTAGAGAAGTTGAGTTCTTGCTTTCCACAATGGAAAGTCAAGGAGTTTTGTTGGATAGTCAAGAAATTTACAGTGATTTGATTAAAGGGTATGTTGGTGTTGGGAAGACCCAATTGGCGTTTCGAGTTTGTAGTGATATGGCGGAAATGGGTTTTGATTTGAGAGATGTGAAGAAGGCCACATTTGAGGGTCTCATTAGACTGCTTTGCAGGGATGGAAAGATTCAGGAGGCAAGAAATTTTGTCAAGAAGGCTATGACTTTCGAACTCAAGCCTAGCAACTTAGTTTTAAATGAAGTTGCTTATGGATATTTAGATGTTGGGAAGACACCTAAACCCCCATATATATGTACCTATAATGCTCTTATCAGCGGGGTATTTATGGAGGGCTATTGTAAAGTCAGAAAATTTGATGAAGCCAAAAGGATAGTTTTTGATATGGCAAGCCATGGACTGATTCAAAACTCTTCAGATGAGGATCCGCTATCCAAAGCATTTATGGTTCTGGGTTTCAAGCCATTAGCTGTGACATTGAAGAGAGATAATGATGTTGGGGGTGCTTTGGTTTTGGCAGATGAAATGATCCGGTGGGGACAAGATTTGTCATTGTCTATGATGTCCAACTTACTGAAAGGGCTTTCTGCATCCCATTTACATACCAAGGGTATCACCAGCATTGTAGATAAAAAGCTTCACTTGGTAAATCAGCTAGACCAAGAAACTCTAAACTTTCTTGCCCAAGCATACAGCAAGAAAGGATTGACATATAATACAAGGATAGTGGTGAATGGAATGATAGAAAGACATCTGAAAATCAACAATGAGACTTACACTGCTTTAGTAAAAGGTTTTTGTAAGAAAGGAAACTTGAGGGAGCTGAATGCTTGCTGGAATATTGCTCAAAATGACGGATGGTTACCAGGGCCGGAAGATTGTAAAGCCTTGATTGAATGTCTTTTCCATAAAGAAATGCTAAGAGAAGCAGTGCAGCTTCTTGAAAGCATTCTGATATCCTACCCAGACTTAAGGTCAGATATGTGTCATATGATCCTTGACAAGCTTTTTGTTACCGGTTTTACAGGAATTGCAAGCATATTGTTAGAAGAACTTGAACAGCGTGGTGGCATCCTGGATCAGATGGCTTATAACAATATTATTAGAGGATTGTGTAAGGGCAAGAATTTTCATGTGGCCTTTACAGTGCTGGACAGTATGCTGGCAAAAAATTTGGCCCCTTGTTTGGATGTTACTGTCCAATTAATTCCTCAGTTGTGTAGGGCTGATAGATTTGGAAAAGCAGTTAACTTGAAAGAGATTGGTCTAAGAGAGAACTCTTCCTATTCACTTTCTCTAGATCGTGCATTGATAAAAGGCTGTTGTATTTCAGGGAAAGTTACAGAAGCAACCACTCTACTACAGAATATGTTGTTAAAGCGGATACCTCCTGATGCTGAAATTTACAATTTTCTGGTTCAGGGTAGGGTTCTTCATGCATGGAAATTGACTGAGCTTATGATTGGACAAAGTGATCCTCATGATCTCAGCATCTACAATATTCTGATATTCTATATTTTCCCAACCGGGAATACTTTGCTTGTCAAGAAAGTTGTGGAGCATTTGCAAGAGAAGAAATTGCTACTTGATGAAGCCAAGCAACCGCGCAACTTGAGAAAAGTTATAACCAGCCTGTGTGATGTTGGGGAGATTGAGAAAGCCTTGGAACTGAGTCGAGAAATGGAATTGAGAGGCCAGATTCATGATTCAATGATTCAAAATGCGATTGTTGAGGGTCTTTCTTCTCGTGGTAGGATTCAAGAAGCTGAAAGTTTTCTGGACAGGATGGTAGAGAAATGTCTAATTCCAGAAAATGTCAACTATAATAATCTAATCAAACTGTTTTGCTCGTATGGAAGACCAAACAAGGCAGTTAATTCTCTGAACATAATGCTGAAGAAAGGGAATGTTCCAGATTCTACCAGTTTTGATTCCATCATCAGCTCTTTCTGTGCCCTTGGTAATCTGGAGCAAGCTATCGATTTTCATGCTGAGATGTTGGATAGAAATCTTAAGCCAAGCATCGACACTTGGGACATTCTGGTCCATAACTTTTGTCAAGATGGAAAAACATCAGAGGCAGAAAGGCTATTGAAGTCTATGGGTTGTGCAGGTGAAACAGTGACCAGGAAGATATATCTGTCTGTAATTAATAGTTATCGCTCAGAGAACAATCTCGGAAAGGTCTCGGAGCTCATGCAAGCAATGCAACAGAGTGGTTATGAGCCAGACTTCGAGACACATTGGTCTCTCATAAGGAACCTAAGAGTTTCTAGTGACAAGGACAATGCAAACAGCAGCAAGGGGTTTCCTGTCAAAGCTTCTCTCTGCAAGTGGATTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048037 GO:0051536 GO:0051540 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

980

Amino Acids

110.05

Weight (kDa)

7.0

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	803 - 850	3.5e-09	PPR repeat family
PPR_2	PF13041	837 - 886	2.3e-09	PPR repeat family
PPR_1	PF12854	868 - 900	9.4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15280
fragaria_vesca	FvH4_6g47953 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48880 FvH4_6g48880
malus_domestica	MD09G1053400.v1.1
prunus_persica	Prupe.3G265200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167491 RchiOBHm_Chr2g0167571 RchiOBHm_Chr2g0167581
rosa_laevigata	RLG00000021724 RLG00000021736
rosa_multiflora	Rmu_sc0000056.1_g000010 Rmu_sc0000056.1_g000011 Rmu_sc0001970.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083370 Rroxscaffold_2G00083410 Rroxscaffold_2G00083440
rosa_rugosa	Rorug02G0530600
rosa_samantha	Rh2AG597900 Rh2AG598800 Rh2AG599200 Rh2AG599300 Rh2AG599400 Rh2BG609400 Rh2BG609800 Rh2BG609900 Rh2BG610000 Rh2CG580300 Rh2DG620700 Rh2DG621000 Rh2DG621100 Rh2DG621900 Rh2DG622000 Rh2DG622100 Rh2DG622600 Rh2DG622700
rosa_wichuraiana	Rw2G049750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1689, 2222
AarI	CACCTGC	1 cut(s)	2699
AasI	GACNNNNNNGTC	2 cut(s)	2639, 2842
Acc16I	TGCGCA	1 cut(s)	408
Acc36I	ACCTGC	1 cut(s)	2699
AccI	GTMKAC	1 cut(s)	103
AccII	CGCG	2 cut(s)	246, 2203
AciI	CCGC	7 cut(s)	246, 343, 686, 915, 1025, 1978, 2201
AclWI	GGATC	6 cut(s)	1016, 1029, 1120, 1585, 1683, 2066
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	7 cut(s)	450, 609, 781, 950, 1723, 1768, 1998
AcuI	CTGAAG	2 cut(s)	996, 2513
AfaI	GTAC	1 cut(s)	895
AfeI	AGCGCT	1 cut(s)	18
AfiI	CCNNNNNNNGG	2 cut(s)	298, 1783
AflII	CTTAAG	2 cut(s)	1567, 2609
AgeI	ACCGGT	1 cut(s)	1613
AhdI	GACNNNNNGTC	1 cut(s)	1570
AjnI	CCWGG	4 cut(s)	234, 1462, 1671, 2723
AjuI	GAANNNNNNNTTGG	4 cut(s)	641, 648, 673, 680
Alw21I	GWGCWC	1 cut(s)	2793
Alw26I	GTCTC	5 cut(s)	740, 1361, 2788, 2828, 2850
AlwI	GGATC	6 cut(s)	1016, 1029, 1120, 1585, 1683, 2066
Aor51HI	AGCGCT	1 cut(s)	18
AoxI	GGCC	8 cut(s)	181, 353, 516, 720, 1466, 1734, 1773, 2290
ApeKI	GCWGC	3 cut(s)	86, 1531, 2895
ApoI	RAATTY	7 cut(s)	450, 609, 781, 950, 1723, 1768, 1998
ArsI	GACNNNNNNTTYG	2 cut(s)	1589, 1621
AseI	ATTAAT	2 cut(s)	1802, 2748
AsiGI	ACCGGT	1 cut(s)	1613
Asp700I	GAANNNNTTC	2 cut(s)	1545, 2370
AspLEI	GCGC	3 cut(s)	19, 409, 2205
AspS9I	GGNCC	5 cut(s)	177, 353, 1466, 1774, 2641
AsuC2I	CCSGG	1 cut(s)	2125
AsuHPI	GGTGA	3 cut(s)	1204, 1339, 2723
AsuII	TTCGAA	1 cut(s)	807
AsuNHI	GCTAGC	1 cut(s)	5
AvaII	GGWCC	2 cut(s)	177, 2641
BaeGI	GKGCMC	1 cut(s)	2554
BamHI	GGATCC	1 cut(s)	1021
BanII	GRGCYC	1 cut(s)	2793
BauI	CACGAG	1 cut(s)	2343
BbsI	GAAGAC	3 cut(s)	656, 875, 2461
Bbv12I	GWGCWC	1 cut(s)	2793
BbvCI	CCTCAGC	1 cut(s)	13
BbvI	GCAGC	3 cut(s)	73, 1543, 2907
BccI	CCATC	6 cut(s)	752, 1449, 1675, 2377, 2540, 2654
BcgI	CGANNNNNNTGC	2 cut(s)	2567, 2601
BciT130I	CCWGG	4 cut(s)	236, 1464, 1673, 2725
BciVI	GTATCC	1 cut(s)	1974
BclI	TGATCA	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	2125
BcoDI	GTCTC	5 cut(s)	740, 1361, 2788, 2828, 2850
BfaI	CTAG	7 cut(s)	6, 426, 819, 1253, 1895, 2871, 2941
BfmI	CTRYAG	2 cut(s)	104, 1958
BfoI	RGCGCY	1 cut(s)	20
BfrI	CTTAAG	2 cut(s)	1567, 2609
BfuAI	ACCTGC	1 cut(s)	2699
BfuI	GTATCC	1 cut(s)	1974
BisI	GCNGC	3 cut(s)	87, 1532, 2896
BlsI	GCNGC	3 cut(s)	88, 1533, 2897
Bme1390I	CCNGG	5 cut(s)	236, 1464, 1673, 2125, 2725
Bme18I	GGWCC	2 cut(s)	177, 2641
BmeRI	GACNNNNNGTC	1 cut(s)	1570
BmgT120I	GGNCC	5 cut(s)	177, 353, 1466, 1774, 2641
BmiI	GGNNCC	6 cut(s)	61, 133, 354, 1023, 1776, 2858
BmrFI	CCNGG	5 cut(s)	236, 1464, 1673, 2125, 2725
BmrI	ACTGGG	1 cut(s)	395
BmsI	GCATC	6 cut(s)	136, 1196, 1677, 1981, 2097, 2628
BmtI	GCTAGC	1 cut(s)	9
BmuI	ACTGGG	1 cut(s)	395
BpiI	GAAGAC	3 cut(s)	656, 875, 2461
BpmI	CTGGAG	1 cut(s)	2585
Bpu10I	CCTNAGC	2 cut(s)	13, 338
Bpu14I	TTCGAA	1 cut(s)	807
BpuEI	CTTGAG	3 cut(s)	797, 1432, 2230
BpuMI	CCSGG	1 cut(s)	2125
Bsa29I	ATCGAT	1 cut(s)	2577
BsaBI	GATNNNNATC	2 cut(s)	1020, 2604
BsaI	GGTCTC	3 cut(s)	740, 2788, 2850
BsaJI	CCNNGG	5 cut(s)	991, 1203, 1463, 2259, 2554
BsaWI	WCCGGW	2 cut(s)	1128, 1613
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 1783
Bse118I	RCCGGY	1 cut(s)	1613
Bse1I	ACTGG	3 cut(s)	133, 390, 2520
Bse3DI	GCAATG	1 cut(s)	2808
Bse8I	GATNNNNATC	2 cut(s)	1020, 2604
BseBI	CCWGG	4 cut(s)	236, 1464, 1673, 2725
BseCI	ATCGAT	1 cut(s)	2577
BseDI	CCNNGG	5 cut(s)	991, 1203, 1463, 2259, 2554
BseGI	GGATG	6 cut(s)	763, 1187, 1460, 1668, 1792, 2388
BseJI	GATNNNNATC	2 cut(s)	1020, 2604
BseLI	CCNNNNNNNGG	2 cut(s)	298, 1783
BseMI	GCAATG	1 cut(s)	2808
BseMII	CTCAG	8 cut(s)	27, 512, 1823, 2040, 2098, 2258, 2580, 2775
BseNI	ACTGG	3 cut(s)	133, 390, 2520
BseSI	GKGCMC	1 cut(s)	2554
BseXI	GCAGC	3 cut(s)	73, 1543, 2907
BsgI	GTGCAG	2 cut(s)	1550, 2727
Bsh1236I	CGCG	2 cut(s)	246, 2203
BshFI	GGCC	8 cut(s)	183, 355, 518, 722, 1468, 1736, 1775, 2292
BshTI	ACCGGT	1 cut(s)	1613
BshVI	ATCGAT	1 cut(s)	2577
BsiHKAI	GWGCWC	1 cut(s)	2793
BsiSI	CCGG	5 cut(s)	180, 1129, 1469, 1614, 2124
BslFI	GGGAC	3 cut(s)	139, 1149, 2645
BslI	CCNNNNNNNGG	2 cut(s)	298, 1783
BsmAI	GTCTC	5 cut(s)	740, 1361, 2788, 2828, 2850
BsmFI	GGGAC	3 cut(s)	139, 1149, 2645
BsmI	GAATGC	2 cut(s)	1429, 1545
BsnI	GGCC	8 cut(s)	183, 355, 518, 722, 1468, 1736, 1775, 2292
Bso31I	GGTCTC	3 cut(s)	740, 2788, 2850
Bsp119I	TTCGAA	1 cut(s)	807
Bsp1286I	GDGCHC	2 cut(s)	2554, 2793
Bsp143I	GATC	8 cut(s)	201, 1021, 1125, 1590, 1675, 1897, 2071, 2080
Bsp19I	CCATGG	1 cut(s)	991
BspACI	CCGC	7 cut(s)	246, 343, 686, 915, 1025, 1978, 2201
BspANI	GGCC	8 cut(s)	183, 355, 518, 722, 1468, 1736, 1775, 2292
BspCNI	CTCAG	8 cut(s)	26, 511, 1822, 2041, 2097, 2259, 2581, 2774
BspDI	ATCGAT	1 cut(s)	2577
BspFNI	CGCG	2 cut(s)	246, 2203
BspHI	TCATGA	2 cut(s)	2077, 2299
BspLI	GGNNCC	6 cut(s)	61, 133, 354, 1023, 1776, 2858
BspMI	ACCTGC	1 cut(s)	2699
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	6 cut(s)	1016, 1029, 1120, 1585, 1683, 2066
BspT104I	TTCGAA	1 cut(s)	807
BspTI	CTTAAG	2 cut(s)	1567, 2609
BspTNI	GGTCTC	3 cut(s)	740, 2788, 2850
BsrDI	GCAATG	1 cut(s)	2808
BsrFI	RCCGGY	1 cut(s)	1613
BsrI	ACTGG	3 cut(s)	133, 390, 2520
BssAI	RCCGGY	1 cut(s)	1613
BssECI	CCNNGG	5 cut(s)	991, 1203, 1463, 2259, 2554
BssMI	GATC	8 cut(s)	201, 1021, 1125, 1590, 1675, 1897, 2071, 2080
BssSI	CACGAG	1 cut(s)	2343
BssT1I	CCWWGG	4 cut(s)	991, 1203, 2259, 2554
Bst2BI	CACGAG	1 cut(s)	2343
Bst2UI	CCWGG	4 cut(s)	236, 1464, 1673, 2725
Bst4CI	ACNGT	8 cut(s)	73, 108, 617, 1744, 1754, 1795, 2439, 2719
Bst6I	CTCTTC	4 cut(s)	245, 1015, 1073, 1882
BstAFI	CTTAAG	2 cut(s)	1567, 2609
BstAPI	GCANNNNNTGC	1 cut(s)	2803
BstBI	TTCGAA	1 cut(s)	807
BstC8I	GCNNGC	9 cut(s)	7, 141, 185, 988, 1429, 1633, 1761, 2571, 2799
BstDSI	CCRYGG	1 cut(s)	991
BstEII	GGTNACC	1 cut(s)	1458
BstF5I	GGATG	6 cut(s)	763, 1187, 1460, 1668, 1792, 2388
BstFNI	CGCG	2 cut(s)	246, 2203
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	3 cut(s)	19, 409, 2205
BstKTI	GATC	8 cut(s)	204, 1024, 1128, 1593, 1678, 1900, 2074, 2083
BstMAI	GTCTC	5 cut(s)	740, 1361, 2788, 2828, 2850
BstMBI	GATC	8 cut(s)	201, 1021, 1125, 1590, 1675, 1897, 2071, 2080
BstMWI	GCNNNNNNNGC	2 cut(s)	406, 2803
BstNI	CCWGG	4 cut(s)	236, 1464, 1673, 2725
BstPI	GGTNACC	1 cut(s)	1458
BstSCI	CCNGG	5 cut(s)	234, 1462, 1671, 2123, 2723
BstSFI	CTRYAG	2 cut(s)	104, 1958
BstSLI	GKGCMC	1 cut(s)	2554
BstUI	CGCG	2 cut(s)	246, 2203
BstV1I	GCAGC	3 cut(s)	73, 1543, 2907
BstV2I	GAAGAC	3 cut(s)	656, 875, 2461
BstX2I	RGATCY	1 cut(s)	1021
BstYI	RGATCY	1 cut(s)	1021
Bsu15I	ATCGAT	1 cut(s)	2577
BsuI	GTATCC	1 cut(s)	1974
BsuRI	GGCC	8 cut(s)	183, 355, 518, 722, 1468, 1736, 1775, 2292
BsuTUI	ATCGAT	1 cut(s)	2577
BtgI	CCRYGG	1 cut(s)	991
BtsCI	GGATG	6 cut(s)	763, 1187, 1460, 1668, 1792, 2388
BtsI	GCAGTG	3 cut(s)	407, 1374, 1533
BtsIMutI	CAGTG	6 cut(s)	407, 622, 1374, 1533, 1749, 2724
BveI	ACCTGC	1 cut(s)	2699
Cac8I	GCNNGC	9 cut(s)	7, 141, 185, 988, 1429, 1633, 1761, 2571, 2799
CciI	TCATGA	2 cut(s)	2077, 2299
CfoI	GCGC	3 cut(s)	19, 409, 2205
Cfr10I	RCCGGY	1 cut(s)	1613
Cfr13I	GGNCC	5 cut(s)	177, 353, 1466, 1774, 2641
ClaI	ATCGAT	1 cut(s)	2577
Csp6I	GTAC	1 cut(s)	894
CspAI	ACCGGT	1 cut(s)	1613
CspCI	CAANNNNNGTGG	2 cut(s)	1305, 1340
CviQI	GTAC	1 cut(s)	894
DpnI	GATC	8 cut(s)	203, 1023, 1127, 1592, 1677, 1899, 2073, 2082
DpnII	GATC	8 cut(s)	201, 1021, 1125, 1590, 1675, 1897, 2071, 2080
DraI	TTTAAA	1 cut(s)	834
DrdI	GACNNNNNNGTC	2 cut(s)	2639, 2842
DriI	GACNNNNNGTC	1 cut(s)	1570
DseDI	GACNNNNNNGTC	2 cut(s)	2639, 2842
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	4 cut(s)	245, 1015, 1073, 1882
Eam1105I	GACNNNNNGTC	1 cut(s)	1570
EarI	CTCTTC	4 cut(s)	245, 1015, 1073, 1882
EciI	GGCGGA	1 cut(s)	701
Ecl136II	GAGCTC	1 cut(s)	2791
Eco130I	CCWWGG	4 cut(s)	991, 1203, 2259, 2554
Eco24I	GRGCYC	1 cut(s)	2793
Eco31I	GGTCTC	3 cut(s)	740, 2788, 2850
Eco32I	GATATC	1 cut(s)	1554
Eco47I	GGWCC	2 cut(s)	177, 2641
Eco47III	AGCGCT	1 cut(s)	18
Eco53kI	GAGCTC	1 cut(s)	2791
Eco57I	CTGAAG	2 cut(s)	996, 2513
Eco91I	GGTNACC	1 cut(s)	1458
EcoICRI	GAGCTC	1 cut(s)	2791
EcoO65I	GGTNACC	1 cut(s)	1458
EcoRII	CCWGG	4 cut(s)	234, 1462, 1671, 2723
EcoRV	GATATC	1 cut(s)	1554
EcoT14I	CCWWGG	4 cut(s)	991, 1203, 2259, 2554
EcoT22I	ATGCAT	1 cut(s)	2038
EcoT38I	GRGCYC	1 cut(s)	2793
ErhI	CCWWGG	4 cut(s)	991, 1203, 2259, 2554
FalI	AAGNNNNNCTT	6 cut(s)	279, 311, 357, 389, 1223, 1255
FaqI	GGGAC	3 cut(s)	139, 1149, 2645
FauI	CCCGC	3 cut(s)	239, 336, 908
FauNDI	CATATG	1 cut(s)	1587
FbaI	TGATCA	1 cut(s)	201
FblI	GTMKAC	1 cut(s)	103
Fnu4HI	GCNGC	3 cut(s)	87, 1532, 2896
FokI	GGATG	6 cut(s)	770, 1174, 1467, 1655, 1799, 2395
FriOI	GRGCYC	1 cut(s)	2793
Fsp4HI	GCNGC	3 cut(s)	87, 1532, 2896
FspBI	CTAG	7 cut(s)	6, 426, 819, 1253, 1895, 2871, 2941
FspI	TGCGCA	1 cut(s)	408
GlaI	GCGC	3 cut(s)	18, 408, 2204
GluI	GCNGC	3 cut(s)	87, 1532, 2896
GsuI	CTGGAG	1 cut(s)	2585
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	8 cut(s)	183, 355, 518, 722, 1468, 1736, 1775, 2292
HapII	CCGG	5 cut(s)	180, 1129, 1469, 1614, 2124
HhaI	GCGC	3 cut(s)	19, 409, 2205
Hin6I	GCGC	3 cut(s)	17, 407, 2203
HinP1I	GCGC	3 cut(s)	17, 407, 2203
HincII	GTYRAC	2 cut(s)	1846, 2416
HindII	GTYRAC	2 cut(s)	1846, 2416
HindIII	AAGCTT	3 cut(s)	1232, 1601, 2916
HpaI	GTTAAC	1 cut(s)	1846
HpaII	CCGG	5 cut(s)	180, 1129, 1469, 1614, 2124
HphI	GGTGA	3 cut(s)	1204, 1339, 2723
Hpy166II	GTNNAC	4 cut(s)	37, 104, 1846, 2416
Hpy8I	GTNNAC	4 cut(s)	37, 104, 1846, 2416
HpyAV	CCTTC	3 cut(s)	302, 712, 787
HpyCH4III	ACNGT	8 cut(s)	73, 108, 617, 1744, 1754, 1795, 2439, 2719
HpyF10VI	GCNNNNNNNGC	2 cut(s)	406, 2803
HspAI	GCGC	3 cut(s)	17, 407, 2203
Ksp22I	TGATCA	1 cut(s)	201
KspAI	GTTAAC	1 cut(s)	1846
Kzo9I	GATC	8 cut(s)	201, 1021, 1125, 1590, 1675, 1897, 2071, 2080
LmnI	GCTCC	5 cut(s)	14, 1417, 2155, 2566, 2788
Lsp1109I	GCAGC	3 cut(s)	73, 1543, 2907
LweI	GCATC	6 cut(s)	136, 1196, 1677, 1981, 2097, 2628
MaeI	CTAG	7 cut(s)	6, 426, 819, 1253, 1895, 2871, 2941
MaeIII	GTNAC	7 cut(s)	1069, 1458, 1609, 1789, 1936, 2719, 2873
MalI	GATC	8 cut(s)	203, 1023, 1127, 1592, 1677, 1899, 2073, 2082
MboI	GATC	8 cut(s)	201, 1021, 1125, 1590, 1675, 1897, 2071, 2080
MfeI	CAATTG	1 cut(s)	656
MflI	RGATCY	1 cut(s)	1021
MhlI	GDGCHC	2 cut(s)	2554, 2793
MlyI	GAGTC	2 cut(s)	446, 2278
MmeI	TCCRAC	4 cut(s)	394, 576, 1188, 2577
Mph1103I	ATGCAT	1 cut(s)	2038
MroXI	GAANNNNTTC	2 cut(s)	1545, 2370
MslI	CAYNNNNRTG	3 cut(s)	119, 209, 889
MspA1I	CMGCKG	1 cut(s)	915
MspCI	CTTAAG	2 cut(s)	1567, 2609
MspI	CCGG	5 cut(s)	180, 1129, 1469, 1614, 2124
MspR9I	CCNGG	5 cut(s)	236, 1464, 1673, 2125, 2725
MunI	CAATTG	1 cut(s)	656
Mva1269I	GAATGC	2 cut(s)	1429, 1545
MvaI	CCWGG	4 cut(s)	236, 1464, 1673, 2725
MvnI	CGCG	2 cut(s)	246, 2203
MwoI	GCNNNNNNNGC	2 cut(s)	406, 2803
NciI	CCSGG	1 cut(s)	2125
NcoI	CCATGG	1 cut(s)	991
NdeI	CATATG	1 cut(s)	1587
NdeII	GATC	8 cut(s)	201, 1021, 1125, 1590, 1675, 1897, 2071, 2080
NheI	GCTAGC	1 cut(s)	5
NlaIV	GGNNCC	6 cut(s)	61, 133, 354, 1023, 1776, 2858
NmuCI	GTSAC	3 cut(s)	1069, 2719, 2873
NsbI	TGCGCA	1 cut(s)	408
NsiI	ATGCAT	1 cut(s)	2038
NspV	TTCGAA	1 cut(s)	807
PagI	TCATGA	2 cut(s)	2077, 2299
PaqCI	CACCTGC	1 cut(s)	2699
PctI	GAATGC	2 cut(s)	1429, 1545
PdmI	GAANNNNTTC	2 cut(s)	1545, 2370
PfeI	GAWTC	9 cut(s)	239, 766, 1000, 2296, 2303, 2311, 2353, 2513, 2528
PfoI	TCCNGGA	1 cut(s)	1671
PinAI	ACCGGT	1 cut(s)	1613
PkrI	GCNGC	3 cut(s)	88, 1533, 2897
PleI	GAGTC	2 cut(s)	445, 2277
PpsI	GAGTC	2 cut(s)	445, 2277
PshBI	ATTAAT	2 cut(s)	1802, 2748
PsiI	TTATAA	2 cut(s)	1689, 2222
Psp124BI	GAGCTC	1 cut(s)	2793
Psp6I	CCWGG	4 cut(s)	234, 1462, 1671, 2723
PspEI	GGTNACC	1 cut(s)	1458
PspGI	CCWGG	4 cut(s)	234, 1462, 1671, 2723
PspN4I	GGNNCC	6 cut(s)	61, 133, 354, 1023, 1776, 2858
PspPI	GGNCC	5 cut(s)	177, 353, 1466, 1774, 2641
PsrI	GAACNNNNNNTAC	2 cut(s)	52, 84
PsuI	RGATCY	1 cut(s)	1021
RsaI	GTAC	1 cut(s)	895
RsaNI	GTAC	1 cut(s)	894
RseI	CAYNNNNRTG	3 cut(s)	119, 209, 889
SacI	GAGCTC	1 cut(s)	2793
SatI	GCNGC	3 cut(s)	87, 1532, 2896
Sau3AI	GATC	8 cut(s)	201, 1021, 1125, 1590, 1675, 1897, 2071, 2080
Sau96I	GGNCC	5 cut(s)	177, 353, 1466, 1774, 2641
SchI	GAGTC	2 cut(s)	446, 2278
ScrFI	CCNGG	5 cut(s)	236, 1464, 1673, 2125, 2725
SduI	GDGCHC	2 cut(s)	2554, 2793
SfaNI	GCATC	6 cut(s)	136, 1196, 1677, 1981, 2097, 2628
SfcI	CTRYAG	2 cut(s)	104, 1958
SfuI	TTCGAA	1 cut(s)	807
SinI	GGWCC	2 cut(s)	177, 2641
SmiMI	CAYNNNNRTG	3 cut(s)	119, 209, 889
SmlI	CTYRAG	5 cut(s)	812, 1411, 1567, 2209, 2609
SmoI	CTYRAG	5 cut(s)	812, 1411, 1567, 2209, 2609
SsiI	CCGC	7 cut(s)	246, 343, 686, 915, 1025, 1978, 2201
SspI	AATATT	3 cut(s)	1438, 1696, 2098
SspMI	CTAG	7 cut(s)	6, 426, 819, 1253, 1895, 2871, 2941
SstI	GAGCTC	1 cut(s)	2793
StyD4I	CCNGG	5 cut(s)	234, 1462, 1671, 2123, 2723
StyI	CCWWGG	4 cut(s)	991, 1203, 2259, 2554
TaaI	ACNGT	8 cut(s)	73, 108, 617, 1744, 1754, 1795, 2439, 2719
TaqI	TCGA	8 cut(s)	225, 231, 667, 807, 2272, 2577, 2622, 2832
TfiI	GAWTC	9 cut(s)	239, 766, 1000, 2296, 2303, 2311, 2353, 2513, 2528
TscAI	CASTG	6 cut(s)	407, 622, 1381, 1533, 1749, 2724
TseFI	GTSAC	3 cut(s)	1069, 2719, 2873
TseI	GCWGC	3 cut(s)	86, 1531, 2895
Tsp45I	GTSAC	3 cut(s)	1069, 2719, 2873
TspDTI	ATGAA	8 cut(s)	852, 972, 1134, 1718, 2021, 2202, 2288, 2573
TspGWI	ACGGA	3 cut(s)	72, 89, 1467
TspRI	CASTG	6 cut(s)	407, 622, 1381, 1533, 1749, 2724
Vha464I	CTTAAG	2 cut(s)	1567, 2609
VpaK11BI	GGWCC	2 cut(s)	177, 2641
VspI	ATTAAT	2 cut(s)	1802, 2748
XapI	RAATTY	7 cut(s)	450, 609, 781, 950, 1723, 1768, 1998
XbaI	TCTAGA	1 cut(s)	1894
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1039
XmiI	GTMKAC	1 cut(s)	103
XmnI	GAANNNNTTC	2 cut(s)	1545, 2370
XspI	CTAG	7 cut(s)	6, 426, 819, 1253, 1895, 2871, 2941
Zsp2I	ATGCAT	1 cut(s)	2038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.