Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000056.1

Orthogroup ID

OG0002362

Physical Location & Seq

Genomic Coordinates Forward (+)

44195 .. 45403

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000056.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atggatattgtgagaagtggcagggatggaaagattcaggaggcaagaaattttgtcatgaaggctatggctttcaaactcaagcctagcaacttagttttaaatgaagttgcttatggatattgtgagaagaaggactttgatgatttgatgagcttctatgctgagattaagtgtgccccagaagttatggctgggaataggattatgcattctctttgtagccattttgggacaagaagagcagaaccttatttgcaagaattagaaattttaggcttcaatcctgatgaggtaacctttggaatcatgattggctggagctgtcgtgaacgaaaacttaaaagtgcctttgtttacctatcagagatgtcggaaagacacctaaacccccatatatgcacctataatgctcttatcagcggggtatttatggagggctattgtaaagtcagaaaatttgatgaagccaaaaggatagtttttgatatggcaagccatggactgattcaaaactcttcagatgaggatccgctatccaaagcatttatggttctgggtttcaagccattagctgtgacattgaagagaggtaatgatgttgggtttgctaaaacagagttttatgatgatcttgggaatggactttatttggatacagacctggataagtatgagaaaagaatcactgggatcctagaagattgcatggtacctgatttttactctcttatgatgaaagaatgcactcttggaaatttgaagggtgcattggttttggtagatgaaatgatccggtggggacaagatttgtcattgtctatgatgtccgacttactgaaagggctttctgcatcccatttacataccaagggaatcaccagcattgtagataaaaagcttcacttggtaaatcagctagaccaagaaactctaaactttcttgcccaagcatacggcaagaaaggattgacatataatacaaggatagtggtgaatggaatgatagaaaggcatctgaaaatcaacaatgagacttacactgctttagtaaaaggtttttgtaagaaaggaaactttgagggagctgaatgcttgctggaatattgctcaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048037 GO:0051536 GO:0051540 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

372

Amino Acids

42.19

Weight (kDa)

6.52

Isoelectric Point (pI)

30.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15280
fragaria_vesca	FvH4_6g47953 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48880 FvH4_6g48880
malus_domestica	MD09G1053400.v1.1
prunus_persica	Prupe.3G265200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167491 RchiOBHm_Chr2g0167571 RchiOBHm_Chr2g0167581
rosa_laevigata	RLG00000021724 RLG00000021736
rosa_multiflora	Rmu_sc0000056.1_g000010 Rmu_sc0000056.1_g000011 Rmu_sc0001970.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083370 Rroxscaffold_2G00083410 Rroxscaffold_2G00083440
rosa_rugosa	Rorug02G0530600
rosa_samantha	Rh2AG597900 Rh2AG598800 Rh2AG599200 Rh2AG599300 Rh2AG599400 Rh2BG609400 Rh2BG609800 Rh2BG609900 Rh2BG610000 Rh2CG580300 Rh2DG620700 Rh2DG621000 Rh2DG621100 Rh2DG621900 Rh2DG622000 Rh2DG622100 Rh2DG622600 Rh2DG622700
rosa_wichuraiana	Rw2G049750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	712
AccB1I	GGYRCC	1 cut(s)	712
AciI	CCGC	2 cut(s)	423, 533
AclWI	GGATC	5 cut(s)	524, 537, 688, 701, 787
AcsI	RAATTY	4 cut(s)	49, 270, 458, 757
AcuI	CTGAAG	1 cut(s)	504
AfaI	GTAC	1 cut(s)	714
AgsI	TTSAA	6 cut(s)	76, 283, 512, 565, 586, 763
AjnI	CCWGG	1 cut(s)	663
AjuI	GAANNNNNNNTTGG	4 cut(s)	735, 755, 767, 787
AluBI	AGCT	6 cut(s)	156, 324, 575, 901, 919, 1088
AluI	AGCT	6 cut(s)	156, 324, 575, 901, 919, 1088
Alw26I	GTCTC	1 cut(s)	1028
AlwI	GGATC	5 cut(s)	524, 537, 688, 701, 787
ApoI	RAATTY	4 cut(s)	49, 270, 458, 757
Asp718I	GGTACC	1 cut(s)	712
AsuHPI	GGTGA	2 cut(s)	871, 1006
BaeGI	GKGCMC	1 cut(s)	181
BamHI	GGATCC	2 cut(s)	529, 693
BanI	GGYRCC	1 cut(s)	712
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	973
BciT130I	CCWGG	1 cut(s)	665
BciVI	GTATCC	1 cut(s)	649
BcoDI	GTCTC	1 cut(s)	1028
BfaI	CTAG	3 cut(s)	87, 698, 920
BfuI	GTATCC	1 cut(s)	649
Bme1390I	CCNGG	1 cut(s)	665
BmiI	GGNNCC	3 cut(s)	531, 695, 714
BmrFI	CCNGG	1 cut(s)	665
BmrI	ACTGGG	1 cut(s)	699
BmsI	GCATC	2 cut(s)	863, 1024
BmuI	ACTGGG	1 cut(s)	699
BpmI	CTGGAG	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	65
BsaBI	GATNNNNATC	1 cut(s)	528
BsaJI	CCNNGG	2 cut(s)	499, 870
BsaWI	WCCGGW	1 cut(s)	795
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bse1I	ACTGG	1 cut(s)	694
Bse8I	GATNNNNATC	1 cut(s)	528
BseBI	CCWGG	1 cut(s)	665
BseDI	CCNNGG	2 cut(s)	499, 870
BseGI	GGATG	2 cut(s)	31, 854
BseJI	GATNNNNATC	1 cut(s)	528
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	694
BseSI	GKGCMC	1 cut(s)	181
BseYI	CCCAGC	1 cut(s)	194
BshNI	GGYRCC	1 cut(s)	712
BsiSI	CCGG	1 cut(s)	796
BslFI	GGGAC	2 cut(s)	247, 816
BsmAI	GTCTC	1 cut(s)	1028
BsmFI	GGGAC	2 cut(s)	247, 816
BsmI	GAATGC	3 cut(s)	211, 749, 1097
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	4 cut(s)	529, 631, 693, 792
Bsp19I	CCATGG	1 cut(s)	499
BspACI	CCGC	2 cut(s)	423, 533
BspCNI	CTCAG	1 cut(s)	157
BspHI	TCATGA	2 cut(s)	57, 309
BspLI	GGNNCC	3 cut(s)	531, 695, 714
BspPI	GGATC	5 cut(s)	524, 537, 688, 701, 787
BspQI	GCTCTTC	1 cut(s)	235
BspT107I	GGYRCC	1 cut(s)	712
BsrI	ACTGG	1 cut(s)	694
BssECI	CCNNGG	2 cut(s)	499, 870
BssMI	GATC	4 cut(s)	529, 631, 693, 792
BssT1I	CCWWGG	2 cut(s)	499, 870
Bst2UI	CCWGG	1 cut(s)	665
Bst6I	CTCTTC	3 cut(s)	235, 523, 581
BstC8I	GCNNGC	2 cut(s)	496, 1097
BstDEI	CTNAG	2 cut(s)	94, 165
BstDSI	CCRYGG	1 cut(s)	499
BstEII	GGTNACC	1 cut(s)	295
BstF5I	GGATG	2 cut(s)	31, 854
BstKTI	GATC	4 cut(s)	532, 634, 696, 795
BstMAI	GTCTC	1 cut(s)	1028
BstMBI	GATC	4 cut(s)	529, 631, 693, 792
BstNI	CCWGG	1 cut(s)	665
BstPI	GGTNACC	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	663
BstSLI	GKGCMC	1 cut(s)	181
BstX2I	RGATCY	2 cut(s)	529, 693
BstYI	RGATCY	2 cut(s)	529, 693
BsuI	GTATCC	1 cut(s)	649
BtgI	CCRYGG	1 cut(s)	499
BtsCI	GGATG	2 cut(s)	31, 854
BtsI	GCAGTG	1 cut(s)	1041
BtsIMutI	CAGTG	2 cut(s)	687, 1041
Cac8I	GCNNGC	2 cut(s)	496, 1097
CciI	TCATGA	2 cut(s)	57, 309
Csp6I	GTAC	1 cut(s)	713
CspCI	CAANNNNNGTGG	2 cut(s)	972, 1007
CviAII	CATG	4 cut(s)	58, 310, 500, 709
CviQI	GTAC	1 cut(s)	713
DdeI	CTNAG	2 cut(s)	94, 165
DpnI	GATC	4 cut(s)	531, 633, 695, 794
DpnII	GATC	4 cut(s)	529, 631, 693, 792
DraI	TTTAAA	1 cut(s)	102
Eam1104I	CTCTTC	3 cut(s)	235, 523, 581
EarI	CTCTTC	3 cut(s)	235, 523, 581
Eco130I	CCWWGG	2 cut(s)	499, 870
Eco57I	CTGAAG	1 cut(s)	504
Eco91I	GGTNACC	1 cut(s)	295
EcoO65I	GGTNACC	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	663
EcoT14I	CCWWGG	2 cut(s)	499, 870
EcoT22I	ATGCAT	1 cut(s)	213
ErhI	CCWWGG	2 cut(s)	499, 870
FaeI	CATG	4 cut(s)	61, 313, 503, 712
FalI	AAGNNNNNCTT	4 cut(s)	122, 154, 890, 922
FaqI	GGGAC	2 cut(s)	247, 816
FatI	CATG	4 cut(s)	57, 309, 499, 708
FauI	CCCGC	1 cut(s)	416
FokI	GGATG	2 cut(s)	38, 841
FspBI	CTAG	3 cut(s)	87, 698, 920
GsaI	CCCAGC	1 cut(s)	198
GsuI	CTGGAG	1 cut(s)	340
HapII	CCGG	1 cut(s)	796
Hin1II	CATG	4 cut(s)	61, 313, 503, 712
HindIII	AAGCTT	1 cut(s)	899
HinfI	GANTC	5 cut(s)	34, 306, 508, 684, 876
HpaII	CCGG	1 cut(s)	796
HphI	GGTGA	2 cut(s)	871, 1006
Hpy166II	GTNNAC	2 cut(s)	332, 358
Hpy188I	TCNGA	6 cut(s)	367, 376, 455, 523, 832, 1020
Hpy188III	TCNNGA	5 cut(s)	38, 58, 287, 310, 329
Hpy8I	GTNNAC	2 cut(s)	332, 358
HpyAV	CCTTC	3 cut(s)	55, 127, 757
HpyCH4V	TGCA	7 cut(s)	211, 259, 402, 708, 747, 770, 854
HpyF3I	CTNAG	2 cut(s)	94, 165
Hsp92II	CATG	4 cut(s)	61, 313, 503, 712
KpnI	GGTACC	1 cut(s)	716
Kzo9I	GATC	4 cut(s)	529, 631, 693, 792
LguI	GCTCTTC	1 cut(s)	235
LmnI	GCTCC	2 cut(s)	321, 1085
LweI	GCATC	2 cut(s)	863, 1024
MaeI	CTAG	3 cut(s)	87, 698, 920
MaeIII	GTNAC	2 cut(s)	295, 577
MalI	GATC	4 cut(s)	531, 633, 695, 794
MboI	GATC	4 cut(s)	529, 631, 693, 792
MboII	GAAGA	5 cut(s)	142, 252, 510, 598, 713
MflI	RGATCY	2 cut(s)	529, 693
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	5 cut(s)	49, 263, 270, 458, 757
MmeI	TCCRAC	2 cut(s)	354, 855
MnlI	CCTC	6 cut(s)	34, 286, 430, 520, 584, 1075
Mph1103I	ATGCAT	1 cut(s)	213
MseI	TTAA	3 cut(s)	101, 171, 342
MspA1I	CMGCKG	1 cut(s)	423
MspI	CCGG	1 cut(s)	796
MspR9I	CCNGG	1 cut(s)	665
Mva1269I	GAATGC	3 cut(s)	211, 749, 1097
MvaI	CCWGG	1 cut(s)	665
NcoI	CCATGG	1 cut(s)	499
NdeII	GATC	4 cut(s)	529, 631, 693, 792
NlaIII	CATG	4 cut(s)	61, 313, 503, 712
NlaIV	GGNNCC	3 cut(s)	531, 695, 714
NmuCI	GTSAC	1 cut(s)	577
NsiI	ATGCAT	1 cut(s)	213
PagI	TCATGA	2 cut(s)	57, 309
PciSI	GCTCTTC	1 cut(s)	235
PctI	GAATGC	3 cut(s)	211, 749, 1097
PfeI	GAWTC	5 cut(s)	34, 306, 508, 684, 876
Psp6I	CCWGG	1 cut(s)	663
PspEI	GGTNACC	1 cut(s)	295
PspFI	CCCAGC	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	663
PspN4I	GGNNCC	3 cut(s)	531, 695, 714
PsuI	RGATCY	2 cut(s)	529, 693
RsaI	GTAC	1 cut(s)	714
RsaNI	GTAC	1 cut(s)	713
SapI	GCTCTTC	1 cut(s)	235
SaqAI	TTAA	3 cut(s)	101, 171, 342
Sau3AI	GATC	4 cut(s)	529, 631, 693, 792
ScrFI	CCNGG	1 cut(s)	665
SduI	GDGCHC	1 cut(s)	181
SfaNI	GCATC	2 cut(s)	863, 1024
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	5 cut(s)	49, 263, 270, 458, 757
SsiI	CCGC	2 cut(s)	423, 533
SspI	AATATT	1 cut(s)	1106
SspMI	CTAG	3 cut(s)	87, 698, 920
StyD4I	CCNGG	1 cut(s)	663
StyI	CCWWGG	2 cut(s)	499, 870
TasI	AATT	5 cut(s)	49, 263, 270, 458, 757
TfiI	GAWTC	5 cut(s)	34, 306, 508, 684, 876
Tru1I	TTAA	3 cut(s)	101, 171, 342
Tru9I	TTAA	3 cut(s)	101, 171, 342
TscAI	CASTG	2 cut(s)	694, 1048
TseFI	GTSAC	1 cut(s)	577
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	5 cut(s)	74, 120, 480, 752, 801
TspRI	CASTG	2 cut(s)	694, 1048
XapI	RAATTY	4 cut(s)	49, 270, 458, 757
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XspI	CTAG	3 cut(s)	87, 698, 920
Zsp2I	ATGCAT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.