FvH4_6g52450

Glycosyl transferase family 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001421
Physical Location & Seq
Forward (+)
38625688 .. 38626629
942 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52450.t1

Sequence Viewer

Length: 735 bp
ATGAAAGGACCCAAACCACGTAACAACAACAACAGGAAGAGACCACCGCGCTACGACGATACTGTTTCCTGGAGCAGGTTCTTCTGGTGCACCTTCTTCGTCTTCTTCAACCTCCTCCTCCTCTCCGGCTTCACCTTCTCCACCTTCCGCCTCCTCTTCGTAGGGCTGTTGATAAGATGGCCAAGTGTAACACAAACTGCCGTAACCGTCGACTCTCCGATCATCATTTCCGTCAGAGAAGTAGTTACGATGCCGGATCAGTCACTAGTTTTCCTGAACCGCCCTCGAACCGGTCGCTTATTTACAAAGGAAGATATCGACTGTTTTTACTTTTCACCTAATGACATGTCCCGCCGGCCTCTCTTCAAGCAACCGCCGCTAGACATAGACGGCGAGGATCGCTACAACCAGATCCTGGCGTACGACGCGGTCATTGACCACGATAACACCACCGTCGTTTTCGTTAAGGGCCTCAATTTACGGCCGGATAGGGTTTCCGATGCTTCGAGGTTCGAGTGCTTGTACGGCTGGGACTTCAGTACTTCCAAGCATTTGTTGAAATCCGACGTCGTTTCGTTGGCACAAGAGATAGTACGGTGTAAAACGCCGTTGAGTGTGTTGACCAAGAGCAAACGTGGGGTGAAGGTTTCAGTTAGGTTGAAAGGCGGAACAATGGTGGACACTATAGCCCGGCCGGGGCTCCGGCCCGGACTGGTGGAACCGCCCCGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92 zf-C3HC4

Protein Analysis

245

Amino Acids

28.01

Weight (kDa)

9.84

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 570
Acc36I ACCTGC 1 cut(s) 66
AccB7I CCANNNNNTGG 1 cut(s) 415
AccI GTMKAC 1 cut(s) 210
AccII CGCG 2 cut(s) 49, 428
AciI CCGC 9 cut(s) 47, 148, 280, 352, 374, 377, 428, 666, 722
AclWI GGATC 3 cut(s) 264, 405, 406
AcoI YGGCCR 3 cut(s) 179, 482, 692
AcuI CTGAAG 1 cut(s) 520
AcyI GRCGYC 1 cut(s) 567
AfaI GTAC 4 cut(s) 422, 524, 541, 594
AfiI CCNNNNNNNGG 4 cut(s) 75, 290, 415, 696
AflIII ACRYGT 1 cut(s) 345
AgeI ACCGGT 1 cut(s) 290
AgsI TTSAA 4 cut(s) 109, 367, 559, 661
AhlI ACTAGT 1 cut(s) 265
AjnI CCWGG 2 cut(s) 68, 414
Alw21I GWGCWC 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 34
Alw44I GTGCAC 1 cut(s) 88
AlwI GGATC 3 cut(s) 264, 405, 406
AlwNI CAGNNNCTG 1 cut(s) 415
AoxI GGCC 6 cut(s) 179, 356, 469, 482, 692, 704
ApaLI GTGCAC 1 cut(s) 88
AsiGI ACCGGT 1 cut(s) 290
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 3 cut(s) 8, 469, 705
AsuC2I CCSGG 4 cut(s) 691, 696, 708, 727
AsuHPI GGTGA 3 cut(s) 124, 327, 652
AvaII GGWCC 1 cut(s) 8
BaeGI GKGCMC 1 cut(s) 92
BalI TGGCCA 1 cut(s) 181
BanII GRGCYC 1 cut(s) 702
BbsI GAAGAC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 92
BccI CCATC 1 cut(s) 171
BceAI ACGGC 5 cut(s) 185, 406, 497, 541, 592
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BciT130I CCWGG 2 cut(s) 70, 416
BcnI CCSGG 4 cut(s) 691, 696, 708, 727
BcoDI GTCTC 1 cut(s) 34
BcuI ACTAGT 1 cut(s) 265
BfaI CTAG 2 cut(s) 266, 380
BfmI CTRYAG 1 cut(s) 684
BfuAI ACCTGC 1 cut(s) 66
BisI GCNGC 1 cut(s) 377
BlsI GCNGC 1 cut(s) 378
BmcAI AGTACT 1 cut(s) 541
Bme1390I CCNGG 6 cut(s) 70, 416, 691, 696, 708, 727
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 3 cut(s) 8, 469, 705
BmiI GGNNCC 3 cut(s) 10, 701, 720
BmrFI CCNGG 6 cut(s) 70, 416, 691, 696, 708, 727
BmsI GCATC 2 cut(s) 240, 490
BpiI GAAGAC 1 cut(s) 94
BpmI CTGGAG 1 cut(s) 91
BpuMI CCSGG 4 cut(s) 691, 696, 708, 727
BsaAI YACGTR 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 567
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 2 cut(s) 695, 725
BsaWI WCCGGW 1 cut(s) 290
Bsc4I CCNNNNNNNGG 4 cut(s) 75, 290, 415, 696
Bse118I RCCGGY 2 cut(s) 290, 354
Bse1I ACTGG 1 cut(s) 717
BseBI CCWGG 2 cut(s) 70, 416
BseDI CCNNGG 2 cut(s) 695, 725
BseLI CCNNNNNNNGG 4 cut(s) 75, 290, 415, 696
BseNI ACTGG 1 cut(s) 717
BseRI GAGGAG 4 cut(s) 104, 107, 110, 143
BseSI GKGCMC 1 cut(s) 92
BseX3I CGGCCG 2 cut(s) 482, 692
BseYI CCCAGC 1 cut(s) 528
Bsh1236I CGCG 2 cut(s) 49, 428
Bsh1285I CGRYCG 3 cut(s) 295, 485, 695
BshFI GGCC 6 cut(s) 181, 358, 471, 484, 694, 706
BshTI ACCGGT 1 cut(s) 290
BsiEI CGRYCG 3 cut(s) 295, 485, 695
BsiHKAI GWGCWC 1 cut(s) 92
BsiWI CGTACG 1 cut(s) 420
BslFI GGGAC 2 cut(s) 334, 545
BslI CCNNNNNNNGG 4 cut(s) 75, 290, 415, 696
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 2 cut(s) 334, 545
BsnI GGCC 6 cut(s) 181, 358, 471, 484, 694, 706
Bso31I GGTCTC 1 cut(s) 34
Bsp1286I GDGCHC 2 cut(s) 92, 702
Bsp143I GATC 4 cut(s) 219, 256, 397, 411
BspACI CCGC 9 cut(s) 47, 148, 280, 352, 374, 377, 428, 666, 722
BspANI GGCC 6 cut(s) 181, 358, 471, 484, 694, 706
BspFNI CGCG 2 cut(s) 49, 428
BspLI GGNNCC 3 cut(s) 10, 701, 720
BspMI ACCTGC 1 cut(s) 66
BspPI GGATC 3 cut(s) 264, 405, 406
BspTNI GGTCTC 1 cut(s) 34
BsrFI RCCGGY 2 cut(s) 290, 354
BsrI ACTGG 1 cut(s) 717
BssAI RCCGGY 2 cut(s) 290, 354
BssECI CCNNGG 2 cut(s) 695, 725
BssMI GATC 4 cut(s) 219, 256, 397, 411
BssNI GRCGYC 1 cut(s) 567
Bst2UI CCWGG 2 cut(s) 70, 416
Bst4CI ACNGT 5 cut(s) 64, 208, 323, 454, 597
Bst6I CTCTTC 3 cut(s) 32, 161, 368
BstACI GRCGYC 1 cut(s) 567
BstBAI YACGTR 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 356
BstENI CCTNNNNNAGG 1 cut(s) 73
BstFNI CGCG 2 cut(s) 49, 428
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 4 cut(s) 222, 259, 400, 414
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 4 cut(s) 219, 256, 397, 411
BstMCI CGRYCG 3 cut(s) 295, 485, 695
BstMWI GCNNNNNNNGC 4 cut(s) 376, 399, 425, 525
BstNI CCWGG 2 cut(s) 70, 416
BstNSI RCATGY 1 cut(s) 349
BstSCI CCNGG 6 cut(s) 68, 414, 689, 694, 706, 725
BstSFI CTRYAG 1 cut(s) 684
BstSLI GKGCMC 1 cut(s) 92
BstUI CGCG 2 cut(s) 49, 428
BstV2I GAAGAC 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 411
BstYI RGATCY 1 cut(s) 411
BstZI CGGCCG 2 cut(s) 482, 692
BsuRI GGCC 6 cut(s) 181, 358, 471, 484, 694, 706
BveI ACCTGC 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 356
CaiI CAGNNNCTG 1 cut(s) 415
CfoI GCGC 1 cut(s) 51
Cfr10I RCCGGY 2 cut(s) 290, 354
Cfr13I GGNCC 3 cut(s) 8, 469, 705
CseI GACGC 1 cut(s) 434
Csp6I GTAC 4 cut(s) 421, 523, 540, 593
CspAI ACCGGT 1 cut(s) 290
CviAII CATG 1 cut(s) 346
CviQI GTAC 4 cut(s) 421, 523, 540, 593
DpnI GATC 4 cut(s) 221, 258, 399, 413
DpnII GATC 4 cut(s) 219, 256, 397, 411
EaeI YGGCCR 3 cut(s) 179, 482, 692
EagI CGGCCG 2 cut(s) 482, 692
Eam1104I CTCTTC 3 cut(s) 32, 161, 368
EarI CTCTTC 3 cut(s) 32, 161, 368
EciI GGCGGA 2 cut(s) 137, 681
EclXI CGGCCG 2 cut(s) 482, 692
Eco24I GRGCYC 1 cut(s) 702
Eco31I GGTCTC 1 cut(s) 34
Eco32I GATATC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 8
Eco52I CGGCCG 2 cut(s) 482, 692
Eco57I CTGAAG 1 cut(s) 520
EcoNI CCTNNNNNAGG 1 cut(s) 73
EcoO109I RGGNCCY 2 cut(s) 8, 469
EcoRII CCWGG 2 cut(s) 68, 414
EcoRV GATATC 1 cut(s) 316
EcoT38I GRGCYC 1 cut(s) 702
FaeI CATG 1 cut(s) 349
FaiI YATR 3 cut(s) 347, 386, 686
FaqI GGGAC 2 cut(s) 334, 545
FatI CATG 1 cut(s) 345
FauI CCCGC 1 cut(s) 359
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 377
FriOI GRGCYC 1 cut(s) 702
Fsp4HI GCNGC 1 cut(s) 377
FspBI CTAG 2 cut(s) 266, 380
GlaI GCGC 1 cut(s) 50
GluI GCNGC 1 cut(s) 377
GsaI CCCAGC 1 cut(s) 532
GsuI CTGGAG 1 cut(s) 91
HaeIII GGCC 6 cut(s) 181, 358, 471, 484, 694, 706
HgaI GACGC 1 cut(s) 434
HhaI GCGC 1 cut(s) 51
Hin1I GRCGYC 1 cut(s) 567
Hin1II CATG 1 cut(s) 349
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HincII GTYRAC 2 cut(s) 211, 621
HindII GTYRAC 2 cut(s) 211, 621
HinfI GANTC 1 cut(s) 212
HphI GGTGA 3 cut(s) 124, 327, 652
Hpy166II GTNNAC 4 cut(s) 90, 211, 621, 679
Hpy188I TCNGA 4 cut(s) 219, 236, 499, 565
Hpy188III TCNNGA 1 cut(s) 274
Hpy8I GTNNAC 4 cut(s) 90, 211, 621, 679
Hpy99I CGWCG 6 cut(s) 59, 212, 428, 458, 569, 572
HpyAV CCTTC 4 cut(s) 103, 145, 154, 637
HpyCH4III ACNGT 5 cut(s) 64, 208, 323, 454, 597
HpyCH4IV ACGT 3 cut(s) 19, 567, 634
HpyCH4V TGCA 1 cut(s) 90
HpyF10VI GCNNNNNNNGC 4 cut(s) 376, 399, 425, 525
HpySE526I ACGT 3 cut(s) 19, 567, 634
Hsp92I GRCGYC 1 cut(s) 567
Hsp92II CATG 1 cut(s) 349
HspAI GCGC 1 cut(s) 49
KroI GCCGGC 1 cut(s) 354
KroNI GCCGGC 1 cut(s) 356
Kzo9I GATC 4 cut(s) 219, 256, 397, 411
LmnI GCTCC 2 cut(s) 72, 705
LweI GCATC 2 cut(s) 240, 490
MaeI CTAG 2 cut(s) 266, 380
MaeII ACGT 3 cut(s) 19, 567, 634
MaeIII GTNAC 5 cut(s) 20, 187, 202, 244, 261
MalI GATC 4 cut(s) 221, 258, 399, 413
MboI GATC 4 cut(s) 219, 256, 397, 411
MboII GAAGA 8 cut(s) 49, 73, 88, 94, 97, 148, 323, 355
MflI RGATCY 1 cut(s) 411
MhlI GDGCHC 2 cut(s) 92, 702
MlsI TGGCCA 1 cut(s) 181
MluCI AATT 2 cut(s) 475, 730
MluNI TGGCCA 1 cut(s) 181
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 588
Mox20I TGGCCA 1 cut(s) 181
MroNI GCCGGC 1 cut(s) 354
MscI TGGCCA 1 cut(s) 181
MseI TTAA 2 cut(s) 465, 733
Msp20I TGGCCA 1 cut(s) 181
MspR9I CCNGG 6 cut(s) 70, 416, 691, 696, 708, 727
MvaI CCWGG 2 cut(s) 70, 416
MvnI CGCG 2 cut(s) 49, 428
MwoI GCNNNNNNNGC 4 cut(s) 376, 399, 425, 525
NaeI GCCGGC 1 cut(s) 356
NciI CCSGG 4 cut(s) 691, 696, 708, 727
NdeII GATC 4 cut(s) 219, 256, 397, 411
NgoMIV GCCGGC 1 cut(s) 354
NlaIII CATG 1 cut(s) 349
NlaIV GGNNCC 3 cut(s) 10, 701, 720
NmuCI GTSAC 1 cut(s) 261
NspI RCATGY 1 cut(s) 349
PciI ACATGT 1 cut(s) 345
PdiI GCCGGC 1 cut(s) 356
Pfl23II CGTACG 1 cut(s) 420
PflFI GACNNNGTC 1 cut(s) 428
PflMI CCANNNNNTGG 1 cut(s) 415
PfoI TCCNGGA 1 cut(s) 68
PinAI ACCGGT 1 cut(s) 290
PkrI GCNGC 1 cut(s) 378
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
Ppu21I YACGTR 1 cut(s) 20
PpuMI RGGWCCY 1 cut(s) 8
PscI ACATGT 1 cut(s) 345
Psp5II RGGWCCY 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 68, 414
PspFI CCCAGC 1 cut(s) 528
PspGI CCWGG 2 cut(s) 68, 414
PspLI CGTACG 1 cut(s) 420
PspN4I GGNNCC 3 cut(s) 10, 701, 720
PspPI GGNCC 3 cut(s) 8, 469, 705
PspPPI RGGWCCY 1 cut(s) 8
PstNI CAGNNNCTG 1 cut(s) 415
PsuI RGATCY 1 cut(s) 411
PsyI GACNNNGTC 1 cut(s) 428
RsaI GTAC 4 cut(s) 422, 524, 541, 594
RsaNI GTAC 4 cut(s) 421, 523, 540, 593
SalI GTCGAC 1 cut(s) 209
SaqAI TTAA 2 cut(s) 465, 733
SatI GCNGC 1 cut(s) 377
Sau3AI GATC 4 cut(s) 219, 256, 397, 411
Sau96I GGNCC 3 cut(s) 8, 469, 705
ScaI AGTACT 1 cut(s) 541
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 6 cut(s) 70, 416, 691, 696, 708, 727
SduI GDGCHC 2 cut(s) 92, 702
SfaNI GCATC 2 cut(s) 240, 490
SfcI CTRYAG 1 cut(s) 684
SinI GGWCC 1 cut(s) 8
SpeI ACTAGT 1 cut(s) 265
Sse9I AATT 2 cut(s) 475, 730
SsiI CCGC 9 cut(s) 47, 148, 280, 352, 374, 377, 428, 666, 722
SspMI CTAG 2 cut(s) 266, 380
StyD4I CCNGG 6 cut(s) 68, 414, 689, 694, 706, 725
TaaI ACNGT 5 cut(s) 64, 208, 323, 454, 597
TaiI ACGT 3 cut(s) 22, 570, 637
TaqI TCGA 5 cut(s) 210, 286, 318, 506, 513
TasI AATT 2 cut(s) 475, 730
TatI WGTACW 1 cut(s) 539
TauI GCSGC 1 cut(s) 379
Tru1I TTAA 2 cut(s) 465, 733
Tru9I TTAA 2 cut(s) 465, 733
TseFI GTSAC 1 cut(s) 261
Tsp45I GTSAC 1 cut(s) 261
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 220
Tth111I GACNNNGTC 1 cut(s) 428
Van91I CCANNNNNTGG 1 cut(s) 415
VneI GTGCAC 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 8
XagI CCTNNNNNAGG 1 cut(s) 73
XceI RCATGY 1 cut(s) 349
XmiI GTMKAC 1 cut(s) 210
XspI CTAG 2 cut(s) 266, 380
ZraI GACGTC 1 cut(s) 568
ZrmI AGTACT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.