Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001421

Physical Location & Seq

Genomic Coordinates Forward (+)

7330295 .. 7332608

Gene Structure 2314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00084880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCTGGTTGGGATGAAGAGTCTCTCCGGATCGTAAGCCTTGTCGTCGACGACACGCCGGAGCAAGATATAAAGCAGAAGAAACGATCTGTTTTCAGGTCCAAGACTCCACACACCAATTCATCGAGAAGAAAGCGGAGAGTTGAGCAAAAAGAGCCCGGTTTCGATCCCAGGATGAGCTTTCTTGTGCTATCTGCTTGGAGATCTGCTTTGAACCCGGCCAGTACCACTCCTTGTGGACACAGTTTCTGTAAGAAATGCCTGCGATCGGCTGCTGATAAATGTGGGAAGAGGTGCCCCAAATGCAGGCAGCTAATGAGCAATGGAAGATCGATCTCGCACCGTGAACACGGTTCTATGGAACGCGATTCAGCTTCATTTCCACAAGAAGTTGAAGCAAGGAAAGCGGCTGGAGCCTTGAGTAGTCGTGAAGAAGGTGAGCGGGAAATCCCCGATAAGGCCTTTAGTTGTAGCAACTTGAGGAATCAAAGCAGAAGAGTATCTGGCAGTGATGTGGCTGTGTTGATGAAGCCCGACGTGAGGGCCATCGGTTCCACCCAAGAAAGGAGCTTGGAAGCCCAACACCAGGTGAAGGAAGCCCGACGTGAGGCCATCGGTTCACCCAAGAAAGGAGCTTGGAAGCCCCAACACCGTGTGGAGGAATCTTTACGTGAGGCCATCGGTTCCACCCAAGAAAAGGAGCTTGGAAGCCCAACACCAGGTGAAAGGAAGCCCGATGTGAGGCCATCGGTTCCACCCAAGAAAGAAGCTTGGAAGCCCAACACCGTGGAGGAAGCCCGACGTGAAGCCATCGTTCCACCCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_92 zf-C3HC4

Protein Analysis

276

Amino Acids

30.96

Weight (kDa)

9.87

Isoelectric Point (pI)

62.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_2	PF13923	72 - 102	2.9e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	73 - 102	1e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27330 AT5G40720 AT5G40720 AT5G40720
fragaria_vesca	FvH4_6g52450 FvH4_6g52460 FvH4_6g52470 FvH4_6g52470
malus_domestica	MD09G1017800.v1.1 MD09G1017900.v1.1 MD17G1018600.v1.1
prunus_persica	Prupe.3G299100_v2.0.a1
pyrus_communis	pycom111g01480 pycom111g01490 pycom17g01530
rosa_chinensis	RchiOBHm_Chr2g0174091 RchiOBHm_Chr2g0174101 RchiOBHm_Chr2g0174111
rosa_laevigata	RLG00000021621 RLG00000022246 RLG00000022247
rosa_multiflora	Rmu_co8270263.1_g000001 Rmu_co8399791.1_g000001 Rmu_sc0003016.1_g000002 Rmu_sc0003016.1_g000003 Rmu_sc0003188.1_g000035 Rmu_sc0003188.1_g000036 Rmu_sc0012378.1_g000002 Rmu_sc0023199.1_g000001 Rmu_sc0023199.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078450 Rroxscaffold_2G00078460 Rroxscaffold_2G00084880
rosa_rugosa	Rorug02G0523200 Rorug02G0574700 Rorug02G0574700
rosa_samantha	Rh2AG589300 Rh2AG654100 Rh2AG654200 Rh2AG654300 Rh2BG601500 Rh2BG665300 Rh2BG665400 Rh2BG665500 Rh2CG572000 Rh2CG629600 Rh2CG629700 Rh2DG611900 Rh2DG612000 Rh2DG680000 Rh2DG680100
rosa_wichuraiana	Rw2G053700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	294
AccBSI	CCGCTC	1 cut(s)	442
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	1 cut(s)	366
AccIII	TCCGGA	1 cut(s)	27
AciI	CCGC	3 cut(s)	136, 407, 442
AclWI	GGATC	2 cut(s)	38, 161
AcoI	YGGCCR	1 cut(s)	219
AdeI	CACNNNGTG	3 cut(s)	589, 655, 722
AfaI	GTAC	1 cut(s)	226
AgsI	TTSAA	2 cut(s)	214, 395
AjiI	CACGTC	3 cut(s)	538, 605, 803
AjnI	CCWGG	3 cut(s)	170, 585, 718
AjuI	GAANNNNNNNTTGG	2 cut(s)	687, 719
AluBI	AGCT	7 cut(s)	180, 313, 374, 570, 635, 703, 770
AluI	AGCT	7 cut(s)	180, 313, 374, 570, 635, 703, 770
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	2 cut(s)	38, 161
AlwNI	CAGNNNCTG	1 cut(s)	249
Aor13HI	TCCGGA	1 cut(s)	27
AoxI	GGCC	6 cut(s)	219, 459, 543, 609, 675, 743
ApeKI	GCWGC	2 cut(s)	272, 310
AspS9I	GGNCC	2 cut(s)	99, 543
AsuC2I	CCSGG	2 cut(s)	159, 218
AsuHPI	GGTGA	4 cut(s)	449, 601, 612, 734
AvaII	GGWCC	1 cut(s)	99
BaeGI	GKGCMC	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	259, 322
BccI	CCATC	5 cut(s)	554, 620, 686, 754, 818
BciT130I	CCWGG	3 cut(s)	172, 587, 720
BcnI	CCSGG	2 cut(s)	159, 218
BcoDI	GTCTC	1 cut(s)	27
BglII	AGATCT	1 cut(s)	203
BisI	GCNGC	3 cut(s)	273, 311, 408
BlsI	GCNGC	3 cut(s)	274, 312, 409
Bme1390I	CCNGG	5 cut(s)	159, 172, 218, 587, 720
Bme18I	GGWCC	1 cut(s)	99
BmgBI	CACGTC	3 cut(s)	538, 605, 803
BmgT120I	GGNCC	2 cut(s)	99, 543
BmiI	GGNNCC	5 cut(s)	296, 415, 553, 685, 753
BmrFI	CCNGG	5 cut(s)	159, 172, 218, 587, 720
BpmI	CTGGAG	1 cut(s)	432
BpuEI	CTTGAG	2 cut(s)	439, 499
BpuMI	CCSGG	2 cut(s)	159, 218
Bsa29I	ATCGAT	1 cut(s)	332
BsaAI	YACGTR	1 cut(s)	671
BsaJI	CCNNGG	2 cut(s)	170, 786
BsaWI	WCCGGW	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	328
BseAI	TCCGGA	1 cut(s)	27
BseBI	CCWGG	3 cut(s)	172, 587, 720
BseCI	ATCGAT	1 cut(s)	332
BseDI	CCNNGG	2 cut(s)	170, 786
BseGI	GGATG	2 cut(s)	19, 180
BseMI	GCAATG	1 cut(s)	328
BseNI	ACTGG	1 cut(s)	222
BseSI	GKGCMC	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	259, 322
Bsh1236I	CGCG	1 cut(s)	366
Bsh1285I	CGRYCG	1 cut(s)	269
BshFI	GGCC	6 cut(s)	221, 461, 545, 611, 677, 745
BshNI	GGYRCC	1 cut(s)	294
BshVI	ATCGAT	1 cut(s)	332
BsiEI	CGRYCG	1 cut(s)	269
BsiSI	CCGG	4 cut(s)	28, 59, 159, 218
BsmAI	GTCTC	1 cut(s)	27
BsnI	GGCC	6 cut(s)	221, 461, 545, 611, 677, 745
Bsp1286I	GDGCHC	2 cut(s)	159, 299
Bsp13I	TCCGGA	1 cut(s)	27
Bsp143I	GATC	7 cut(s)	30, 86, 166, 203, 266, 329, 333
BspACI	CCGC	3 cut(s)	136, 407, 442
BspANI	GGCC	6 cut(s)	221, 461, 545, 611, 677, 745
BspDI	ATCGAT	1 cut(s)	332
BspEI	TCCGGA	1 cut(s)	27
BspFNI	CGCG	1 cut(s)	366
BspLI	GGNNCC	5 cut(s)	296, 415, 553, 685, 753
BspPI	GGATC	2 cut(s)	38, 161
BspT107I	GGYRCC	1 cut(s)	294
BsrBI	CCGCTC	1 cut(s)	442
BsrDI	GCAATG	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	222
BssECI	CCNNGG	2 cut(s)	170, 786
BssMI	GATC	7 cut(s)	30, 86, 166, 203, 266, 329, 333
Bst2UI	CCWGG	3 cut(s)	172, 587, 720
Bst4CI	ACNGT	5 cut(s)	245, 344, 353, 653, 787
Bst6I	CTCTTC	3 cut(s)	12, 284, 490
BstBAI	YACGTR	1 cut(s)	671
BstC8I	GCNNGC	2 cut(s)	263, 308
BstDSI	CCRYGG	1 cut(s)	786
BstF5I	GGATG	2 cut(s)	19, 180
BstFNI	CGCG	1 cut(s)	366
BstKTI	GATC	7 cut(s)	33, 89, 169, 206, 269, 332, 336
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	7 cut(s)	30, 86, 166, 203, 266, 329, 333
BstMCI	CGRYCG	1 cut(s)	269
BstMWI	GCNNNNNNNGC	4 cut(s)	154, 303, 404, 413
BstNI	CCWGG	3 cut(s)	172, 587, 720
BstSCI	CCNGG	5 cut(s)	157, 170, 216, 585, 718
BstSLI	GKGCMC	1 cut(s)	299
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	2 cut(s)	259, 322
BstX2I	RGATCY	1 cut(s)	203
BstXI	CCANNNNNNTGG	1 cut(s)	787
BstYI	RGATCY	1 cut(s)	203
Bsu15I	ATCGAT	1 cut(s)	332
BsuRI	GGCC	6 cut(s)	221, 461, 545, 611, 677, 745
BsuTUI	ATCGAT	1 cut(s)	332
BtgI	CCRYGG	1 cut(s)	786
BtrI	CACGTC	3 cut(s)	538, 605, 803
BtsCI	GGATG	2 cut(s)	19, 180
BtsI	GCAGTG	1 cut(s)	514
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	2 cut(s)	263, 308
CaiI	CAGNNNCTG	1 cut(s)	249
Cfr13I	GGNCC	2 cut(s)	99, 543
ClaI	ATCGAT	1 cut(s)	332
CsiI	ACCWGGT	2 cut(s)	585, 718
Csp6I	GTAC	1 cut(s)	225
CviQI	GTAC	1 cut(s)	225
DpnI	GATC	7 cut(s)	32, 88, 168, 205, 268, 331, 335
DpnII	GATC	7 cut(s)	30, 86, 166, 203, 266, 329, 333
DraIII	CACNNNGTG	3 cut(s)	589, 655, 722
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	3 cut(s)	12, 284, 490
EarI	CTCTTC	3 cut(s)	12, 284, 490
Eco147I	AGGCCT	1 cut(s)	461
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	99
EcoRII	CCWGG	3 cut(s)	170, 585, 718
EcoT38I	GRGCYC	1 cut(s)	159
FaiI	YATR	2 cut(s)	71, 359
FauI	CCCGC	1 cut(s)	435
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	273, 311, 408
FokI	GGATG	2 cut(s)	26, 187
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	3 cut(s)	273, 311, 408
GluI	GCNGC	3 cut(s)	273, 311, 408
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	6 cut(s)	221, 461, 545, 611, 677, 745
HapII	CCGG	4 cut(s)	28, 59, 159, 218
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	768
HinfI	GANTC	5 cut(s)	20, 106, 368, 484, 662
HpaII	CCGG	4 cut(s)	28, 59, 159, 218
HphI	GGTGA	4 cut(s)	449, 601, 612, 734
Hpy166II	GTNNAC	4 cut(s)	49, 239, 347, 620
Hpy188III	TCNNGA	3 cut(s)	28, 126, 428
Hpy8I	GTNNAC	4 cut(s)	49, 239, 347, 620
Hpy99I	CGWCG	5 cut(s)	50, 53, 539, 606, 804
HpyAV	CCTTC	2 cut(s)	428, 586
HpyCH4III	ACNGT	5 cut(s)	245, 344, 353, 653, 787
HpyCH4IV	ACGT	4 cut(s)	537, 604, 670, 802
HpyCH4V	TGCA	1 cut(s)	306
HpyF10VI	GCNNNNNNNGC	4 cut(s)	154, 303, 404, 413
HpySE526I	ACGT	4 cut(s)	537, 604, 670, 802
Kpn2I	TCCGGA	1 cut(s)	27
Kzo9I	GATC	7 cut(s)	30, 86, 166, 203, 266, 329, 333
LmnI	GCTCC	5 cut(s)	61, 413, 567, 632, 700
Lsp1109I	GCAGC	2 cut(s)	259, 322
MabI	ACCWGGT	2 cut(s)	585, 718
MaeII	ACGT	4 cut(s)	537, 604, 670, 802
MalI	GATC	7 cut(s)	32, 88, 168, 205, 268, 331, 335
MbiI	CCGCTC	1 cut(s)	442
MboI	GATC	7 cut(s)	30, 86, 166, 203, 266, 329, 333
MboII	GAAGA	7 cut(s)	29, 91, 141, 301, 339, 443, 507
MflI	RGATCY	1 cut(s)	203
MhlI	GDGCHC	2 cut(s)	159, 299
MluCI	AATT	1 cut(s)	118
MlyI	GAGTC	2 cut(s)	29, 100
MnlI	CCTC	8 cut(s)	285, 474, 534, 601, 652, 667, 735, 784
MroI	TCCGGA	1 cut(s)	27
MspI	CCGG	4 cut(s)	28, 59, 159, 218
MspR9I	CCNGG	5 cut(s)	159, 172, 218, 587, 720
MvaI	CCWGG	3 cut(s)	172, 587, 720
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	4 cut(s)	154, 303, 404, 413
NciI	CCSGG	2 cut(s)	159, 218
NdeII	GATC	7 cut(s)	30, 86, 166, 203, 266, 329, 333
NlaIV	GGNNCC	5 cut(s)	296, 415, 553, 685, 753
PceI	AGGCCT	1 cut(s)	461
PfeI	GAWTC	3 cut(s)	368, 484, 662
PkrI	GCNGC	3 cut(s)	274, 312, 409
Ple19I	CGATCG	1 cut(s)	269
PleI	GAGTC	2 cut(s)	28, 100
PpsI	GAGTC	2 cut(s)	28, 100
Ppu21I	YACGTR	1 cut(s)	671
Psp6I	CCWGG	3 cut(s)	170, 585, 718
PspGI	CCWGG	3 cut(s)	170, 585, 718
PspN4I	GGNNCC	5 cut(s)	296, 415, 553, 685, 753
PspPI	GGNCC	2 cut(s)	99, 543
PstNI	CAGNNNCTG	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	203
PvuI	CGATCG	1 cut(s)	269
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
SalI	GTCGAC	1 cut(s)	47
SatI	GCNGC	3 cut(s)	273, 311, 408
Sau3AI	GATC	7 cut(s)	30, 86, 166, 203, 266, 329, 333
Sau96I	GGNCC	2 cut(s)	99, 543
SchI	GAGTC	2 cut(s)	29, 100
ScrFI	CCNGG	5 cut(s)	159, 172, 218, 587, 720
SduI	GDGCHC	2 cut(s)	159, 299
SexAI	ACCWGGT	2 cut(s)	585, 718
SgrDI	CGTCGACG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	418, 478
SmoI	CTYRAG	2 cut(s)	418, 478
Sse9I	AATT	1 cut(s)	118
SseBI	AGGCCT	1 cut(s)	461
SsiI	CCGC	3 cut(s)	136, 407, 442
StuI	AGGCCT	1 cut(s)	461
StyD4I	CCNGG	5 cut(s)	157, 170, 216, 585, 718
TaaI	ACNGT	5 cut(s)	245, 344, 353, 653, 787
TaiI	ACGT	4 cut(s)	540, 607, 673, 805
TaqI	TCGA	4 cut(s)	48, 125, 165, 332
TasI	AATT	1 cut(s)	118
TauI	GCSGC	1 cut(s)	410
TfiI	GAWTC	3 cut(s)	368, 484, 662
TscAI	CASTG	1 cut(s)	514
TseI	GCWGC	2 cut(s)	272, 310
TspDTI	ATGAA	4 cut(s)	30, 111, 366, 542
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	1 cut(s)	99
XmiI	GTMKAC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.