Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001421

Physical Location & Seq

Genomic Coordinates Forward (+)

86806967 .. 86807263

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54126

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCCAACTGTAACAAAAACCGCCGTAACCGCCGACTCTCCAGTCACCATTTCCGTCCGAGAAGTAGTTACCTGCCGGACCAGTCACTGGTTTTACTAAACTACCCTCGAACCGGTCGCTTATTTACAAAGGAGGAAATCGACTGCATTTACTTCTCAGCTAATGACCTCTCCGCCCCGCCTCTCTTCAAGCAACCGCCGCTCGACATGGATGGCGAGGATCCCTACAACCAGATCATACGGTGCCCGCTGCAGTCCGGAGATGGCTTTAGGGTTTCAGTTGGTTTTAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_92 zf-C3HC4

Protein Analysis

98

Amino Acids

11.35

Weight (kDa)

9.41

Isoelectric Point (pI)

61.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27330 AT5G40720 AT5G40720 AT5G40720
fragaria_vesca	FvH4_6g52450 FvH4_6g52460 FvH4_6g52470 FvH4_6g52470
malus_domestica	MD09G1017800.v1.1 MD09G1017900.v1.1 MD17G1018600.v1.1
prunus_persica	Prupe.3G299100_v2.0.a1
pyrus_communis	pycom111g01480 pycom111g01490 pycom17g01530
rosa_chinensis	RchiOBHm_Chr2g0174091 RchiOBHm_Chr2g0174101 RchiOBHm_Chr2g0174111
rosa_laevigata	RLG00000021621 RLG00000022246 RLG00000022247
rosa_multiflora	Rmu_co8270263.1_g000001 Rmu_co8399791.1_g000001 Rmu_sc0003016.1_g000002 Rmu_sc0003016.1_g000003 Rmu_sc0003188.1_g000035 Rmu_sc0003188.1_g000036 Rmu_sc0012378.1_g000002 Rmu_sc0023199.1_g000001 Rmu_sc0023199.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078450 Rroxscaffold_2G00078460 Rroxscaffold_2G00084880
rosa_rugosa	Rorug02G0523200 Rorug02G0574700 Rorug02G0574700
rosa_samantha	Rh2AG589300 Rh2AG654100 Rh2AG654200 Rh2AG654300 Rh2BG601500 Rh2BG665300 Rh2BG665400 Rh2BG665500 Rh2CG572000 Rh2CG629600 Rh2CG629700 Rh2DG611900 Rh2DG612000 Rh2DG680000 Rh2DG680100
rosa_wichuraiana	Rw2G053700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	42
Acc36I	ACCTGC	1 cut(s)	81
AccB1I	GGYRCC	1 cut(s)	243
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccBSI	CCGCTC	1 cut(s)	202
AccIII	TCCGGA	1 cut(s)	257
AciI	CCGC	7 cut(s)	22, 31, 174, 179, 197, 200, 248
AclWI	GGATC	2 cut(s)	215, 228
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	2 cut(s)	88, 113
AgeI	ACCGGT	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	190
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
AlwI	GGATC	2 cut(s)	215, 228
AlwNI	CAGNNNCTG	1 cut(s)	88
Aor13HI	TCCGGA	1 cut(s)	257
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	250
AsiGI	ACCGGT	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	248
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	237
BccI	CCATC	2 cut(s)	206, 257
BceAI	ACGGC	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	251
BfuAI	ACCTGC	1 cut(s)	81
BisI	GCNGC	2 cut(s)	200, 251
BlsI	GCNGC	2 cut(s)	201, 252
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	2 cut(s)	222, 245
BpmI	CTGGAG	1 cut(s)	25
BsaWI	WCCGGW	2 cut(s)	113, 257
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 113
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	3 cut(s)	42, 82, 93
BseAI	TCCGGA	1 cut(s)	257
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	2 cut(s)	88, 113
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	3 cut(s)	42, 82, 93
BseSI	GKGCMC	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	243
BshTI	ACCGGT	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	118
BsiSI	CCGG	3 cut(s)	77, 114, 258
BslI	CCNNNNNNNGG	2 cut(s)	88, 113
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp13I	TCCGGA	1 cut(s)	257
Bsp143I	GATC	2 cut(s)	220, 234
BspACI	CCGC	7 cut(s)	22, 31, 174, 179, 197, 200, 248
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	170
BspEI	TCCGGA	1 cut(s)	257
BspLI	GGNNCC	2 cut(s)	222, 245
BspMAI	CTGCAG	1 cut(s)	255
BspMI	ACCTGC	1 cut(s)	81
BspPI	GGATC	2 cut(s)	215, 228
BspT107I	GGYRCC	1 cut(s)	243
BsrBI	CCGCTC	1 cut(s)	202
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	3 cut(s)	42, 82, 93
BssAI	RCCGGY	1 cut(s)	113
BssMI	GATC	2 cut(s)	220, 234
Bst4CI	ACNGT	2 cut(s)	11, 243
Bst6I	CTCTTC	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	217
BstKTI	GATC	2 cut(s)	223, 237
BstMBI	GATC	2 cut(s)	220, 234
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 199
BstSFI	CTRYAG	1 cut(s)	251
BstSLI	GKGCMC	1 cut(s)	248
BstV1I	GCAGC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	86
BveI	ACCTGC	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	248
CaiI	CAGNNNCTG	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	79
CspAI	ACCGGT	1 cut(s)	113
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	3 cut(s)	5, 161, 267
CviKI_1	RGCY	3 cut(s)	5, 161, 267
DdeI	CTNAG	1 cut(s)	157
DpnI	GATC	2 cut(s)	222, 236
DpnII	GATC	2 cut(s)	220, 234
DraI	TTTAAA	1 cut(s)	289
DrdI	GACNNNNNNGTC	1 cut(s)	42
DseDI	GACNNNNNNGTC	1 cut(s)	42
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
EciI	GGCGGA	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	79
FaeI	CATG	1 cut(s)	211
FaiI	YATR	2 cut(s)	209, 239
FatI	CATG	1 cut(s)	207
FauI	CCCGC	2 cut(s)	186, 255
Fnu4HI	GCNGC	2 cut(s)	200, 251
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	2 cut(s)	200, 251
GluI	GCNGC	2 cut(s)	200, 251
GsuI	CTGGAG	1 cut(s)	25
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	77, 114, 258
Hin1II	CATG	1 cut(s)	211
HinfI	GANTC	1 cut(s)	36
HpaII	CCGG	3 cut(s)	77, 114, 258
HphI	GGTGA	1 cut(s)	38
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	1 cut(s)	258
HpyCH4III	ACNGT	2 cut(s)	11, 243
HpyCH4V	TGCA	2 cut(s)	147, 253
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 199
HpyF3I	CTNAG	1 cut(s)	157
Hsp92II	CATG	1 cut(s)	211
Kpn2I	TCCGGA	1 cut(s)	257
Kzo9I	GATC	2 cut(s)	220, 234
LpnPI	CCDG	8 cut(s)	55, 74, 86, 90, 95, 127, 245, 271
Lsp1109I	GCAGC	1 cut(s)	237
MaeIII	GTNAC	5 cut(s)	11, 26, 44, 68, 84
MalI	GATC	2 cut(s)	222, 236
MbiI	CCGCTC	1 cut(s)	202
MboI	GATC	2 cut(s)	220, 234
MboII	GAAGA	1 cut(s)	178
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	248
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	30
MnlI	CCTC	5 cut(s)	117, 127, 179, 192, 211
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	288
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	3 cut(s)	77, 114, 258
MwoI	GCNNNNNNNGC	2 cut(s)	30, 199
NdeII	GATC	2 cut(s)	220, 234
NlaIII	CATG	1 cut(s)	211
NlaIV	GGNNCC	2 cut(s)	222, 245
NmuCI	GTSAC	2 cut(s)	44, 84
PflMI	CCANNNNNTGG	1 cut(s)	88
PinAI	ACCGGT	1 cut(s)	113
PkrI	GCNGC	2 cut(s)	201, 252
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	222, 245
PspPI	GGNCC	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	255
PstNI	CAGNNNCTG	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	2 cut(s)	200, 251
Sau3AI	GATC	2 cut(s)	220, 234
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	248
SetI	ASST	3 cut(s)	75, 163, 171
SfcI	CTRYAG	1 cut(s)	251
SinI	GGWCC	1 cut(s)	79
SsiI	CCGC	7 cut(s)	22, 31, 174, 179, 197, 200, 248
TaaI	ACNGT	2 cut(s)	11, 243
TaqI	TCGA	3 cut(s)	109, 141, 204
TauI	GCSGC	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	2 cut(s)	44, 84
TseI	GCWGC	1 cut(s)	250
Tsp45I	GTSAC	2 cut(s)	44, 84
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	93
Van91I	CCANNNNNTGG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.