Rh2CG629600

Glycosyl transferase family 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001421
Physical Location & Seq
Forward (+)
80260856 .. 80263317
2462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG629600.1

Sequence Viewer

Length: 825 bp
ATGCTGAAATGGGAGTGCAACGTTGGTTTATTTACGACAACAATAGTGATGATGAAACTGATGTTGTTATTGAGCTTCTACAGAGTGGGAACTACAACATTACCCGGCACCTCTGGCCTTGGATCAAGACCCAGGAGGCCGGGTTCGCGCATTGCGCGTTACGGCCACGCAAGACGTGCCAGTGGGTTGGGTTTATTGATGTGGACGAGTTTTTTTCACATGCCTTCGGGGTTATTATTACATGACGTGCTGCGCAACCAGTCCAAGTATGGTTATGGTGAGGTTCAGGCTTGGTGCTATAGTTTTGGGCAGTCGGGCCTCAAGAGTGTCCCGATTCAGGGCGTGACGGTAGGGTACACTTGTCGCGTGGCGGCCCCGGATAGGCACAAGAGCATTGTGAAGCCGGAGGCGTTGGATTCGACATTGATGAATGTGGTGCACCATTTCAAACTTAGAAATGGTTACGAGGCAGTGAAAGCGGATAGGGGAGTGTTGGTTATCAATCACTACAAGTACCAAGTGTGGGAGGTTTTTAAGGAGAAGTTCTATAGGAGAGTGGCGACCTATGTGGCGGACTGGCAGGAGGAGCAGAATGTGGGTTCCAAGGATCGAGCCCCGGGATTGGGGACTAAGGCGGTGGAGCCACCGGATTGGCCGGAGAGGTTTTGCGAGGTTAATGACACTGGACTTAGGAACCGGGTGTTGAAGAACTTGGCTGACCCGTATACAAGGCTTTTGCCGTGGCAGGAGGGCTATCAAAAACATGAGAAGAGAAGGGTGAGAAGGAGAAAGAGAAAGAGACGAAAGCATAGAGGGAATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92 zf-C3HC4

Protein Analysis

274

Amino Acids

31.67

Weight (kDa)

10.26

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_92 PF01697 99 - 192 4.5e-09 Glycosyltransferase family 92
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 254
AccB1I GGYRCC 1 cut(s) 107
AccI GTMKAC 1 cut(s) 725
AccII CGCG 3 cut(s) 148, 157, 366
AciI CCGC 4 cut(s) 371, 479, 572, 635
AclI AACGTT 1 cut(s) 21
AclWI GGATC 2 cut(s) 130, 615
AcoI YGGCCR 2 cut(s) 163, 653
AcsI RAATTY 1 cut(s) 817
AfaI GTAC 2 cut(s) 356, 515
AfiI CCNNNNNNNGG 6 cut(s) 337, 338, 381, 523, 622, 623
AgsI TTSAA 2 cut(s) 448, 706
AjiI CACGTC 2 cut(s) 176, 247
AjnI CCWGG 1 cut(s) 131
AloI GAACNNNNNNTCC 2 cut(s) 127, 159
AluBI AGCT 1 cut(s) 75
AluI AGCT 1 cut(s) 75
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 1 cut(s) 793
Alw44I GTGCAC 1 cut(s) 437
AlwI GGATC 2 cut(s) 130, 615
Ama87I CYCGRG 1 cut(s) 616
AoxI GGCC 6 cut(s) 115, 137, 163, 316, 372, 653
ApaLI GTGCAC 1 cut(s) 437
ApeKI GCWGC 1 cut(s) 250
ApoI RAATTY 1 cut(s) 817
AspLEI GCGC 3 cut(s) 150, 157, 255
AspS9I GGNCC 2 cut(s) 316, 373
AsuC2I CCSGG 6 cut(s) 105, 141, 377, 617, 618, 698
AsuHPI GGTGA 2 cut(s) 290, 790
AvaI CYCGRG 1 cut(s) 616
BaeGI GKGCMC 1 cut(s) 441
BaeI ACNNNNGTAYC 2 cut(s) 346, 379
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 616
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 1 cut(s) 237
BceAI ACGGC 2 cut(s) 178, 724
BciT130I CCWGG 1 cut(s) 133
BcnI CCSGG 6 cut(s) 105, 141, 377, 617, 618, 698
BcoDI GTCTC 1 cut(s) 793
BfmI CTRYAG 3 cut(s) 79, 298, 547
BisI GCNGC 2 cut(s) 251, 372
BlsI GCNGC 2 cut(s) 252, 373
Bme1390I CCNGG 7 cut(s) 105, 133, 141, 377, 617, 618, 698
BmeT110I CYCGRG 1 cut(s) 616
BmgBI CACGTC 2 cut(s) 176, 247
BmgT120I GGNCC 2 cut(s) 316, 373
BmiI GGNNCC 5 cut(s) 109, 375, 601, 642, 695
BmrFI CCNGG 7 cut(s) 105, 133, 141, 377, 617, 618, 698
BpuEI CTTGAG 1 cut(s) 305
BpuMI CCSGG 6 cut(s) 105, 141, 377, 617, 618, 698
BsaJI CCNNGG 7 cut(s) 118, 131, 375, 603, 615, 616, 740
BsaWI WCCGGW 1 cut(s) 646
BsaXI ACNNNNNCTCC 4 cut(s) 127, 157, 480, 510
Bsc4I CCNNNNNNNGG 6 cut(s) 337, 338, 381, 523, 622, 623
Bse1I ACTGG 4 cut(s) 180, 259, 581, 688
Bse3DI GCAATG 1 cut(s) 150
BseBI CCWGG 1 cut(s) 133
BseDI CCNNGG 7 cut(s) 118, 131, 375, 603, 615, 616, 740
BseLI CCNNNNNNNGG 6 cut(s) 337, 338, 381, 523, 622, 623
BseMI GCAATG 1 cut(s) 150
BseNI ACTGG 4 cut(s) 180, 259, 581, 688
BseRI GAGGAG 1 cut(s) 599
BseSI GKGCMC 1 cut(s) 441
BseXI GCAGC 1 cut(s) 237
Bsh1236I CGCG 3 cut(s) 148, 157, 366
BshFI GGCC 6 cut(s) 117, 139, 165, 318, 374, 655
BshNI GGYRCC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 441
BsiHKCI CYCGRG 1 cut(s) 616
BsiSI CCGG 8 cut(s) 105, 140, 377, 404, 617, 647, 656, 697
BslFI GGGAC 2 cut(s) 314, 640
BslI CCNNNNNNNGG 6 cut(s) 337, 338, 381, 523, 622, 623
BsmAI GTCTC 1 cut(s) 793
BsmBI CGTCTC 1 cut(s) 793
BsmFI GGGAC 2 cut(s) 314, 640
BsnI GGCC 6 cut(s) 117, 139, 165, 318, 374, 655
BsoBI CYCGRG 1 cut(s) 616
Bsp1286I GDGCHC 2 cut(s) 441, 616
Bsp143I GATC 2 cut(s) 122, 607
BspACI CCGC 4 cut(s) 371, 479, 572, 635
BspANI GGCC 6 cut(s) 117, 139, 165, 318, 374, 655
BspFNI CGCG 3 cut(s) 148, 157, 366
BspLI GGNNCC 5 cut(s) 109, 375, 601, 642, 695
BspPI GGATC 2 cut(s) 130, 615
BspT107I GGYRCC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 150
BsrI ACTGG 4 cut(s) 180, 259, 581, 688
BssECI CCNNGG 7 cut(s) 118, 131, 375, 603, 615, 616, 740
BssMI GATC 2 cut(s) 122, 607
BssNAI GTATAC 1 cut(s) 726
BssT1I CCWWGG 2 cut(s) 118, 603
Bst1107I GTATAC 1 cut(s) 726
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 349
Bst6I CTCTTC 1 cut(s) 764
BstAPI GCANNNNNTGC 1 cut(s) 176
BstDEI CTNAG 3 cut(s) 452, 630, 689
BstDSI CCRYGG 1 cut(s) 740
BstFNI CGCG 3 cut(s) 148, 157, 366
BstHHI GCGC 3 cut(s) 150, 157, 255
BstKTI GATC 2 cut(s) 125, 610
BstMAI GTCTC 1 cut(s) 793
BstMBI GATC 2 cut(s) 122, 607
BstMWI GCNNNNNNNGC 6 cut(s) 114, 145, 154, 176, 476, 586
BstNI CCWGG 1 cut(s) 133
BstNSI RCATGY 1 cut(s) 223
BstSCI CCNGG 7 cut(s) 103, 131, 139, 375, 615, 616, 696
BstSFI CTRYAG 3 cut(s) 79, 298, 547
BstSLI GKGCMC 1 cut(s) 441
BstUI CGCG 3 cut(s) 148, 157, 366
BstV1I GCAGC 1 cut(s) 237
BstXI CCANNNNNNTGG 2 cut(s) 187, 651
BstZ17I GTATAC 1 cut(s) 726
BsuRI GGCC 6 cut(s) 117, 139, 165, 318, 374, 655
BtgI CCRYGG 1 cut(s) 740
BtrI CACGTC 2 cut(s) 176, 247
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 3 cut(s) 187, 477, 681
CfoI GCGC 3 cut(s) 150, 157, 255
Cfr13I GGNCC 2 cut(s) 316, 373
Cfr9I CCCGGG 1 cut(s) 616
Csp6I GTAC 2 cut(s) 355, 514
CviAII CATG 3 cut(s) 220, 242, 764
CviQI GTAC 2 cut(s) 355, 514
DdeI CTNAG 3 cut(s) 452, 630, 689
DpnI GATC 2 cut(s) 124, 609
DpnII GATC 2 cut(s) 122, 607
EaeI YGGCCR 2 cut(s) 163, 653
Eam1104I CTCTTC 1 cut(s) 764
EarI CTCTTC 1 cut(s) 764
EciI GGCGGA 1 cut(s) 587
Eco130I CCWWGG 2 cut(s) 118, 603
Eco24I GRGCYC 1 cut(s) 616
Eco88I CYCGRG 1 cut(s) 616
EcoRII CCWGG 1 cut(s) 131
EcoT14I CCWWGG 2 cut(s) 118, 603
EcoT38I GRGCYC 1 cut(s) 616
ErhI CCWWGG 2 cut(s) 118, 603
Esp3I CGTCTC 1 cut(s) 793
FaeI CATG 3 cut(s) 223, 245, 767
FaqI GGGAC 2 cut(s) 314, 640
FatI CATG 3 cut(s) 219, 241, 763
FblI GTMKAC 1 cut(s) 725
Fnu4HI GCNGC 2 cut(s) 251, 372
FriOI GRGCYC 1 cut(s) 616
Fsp4HI GCNGC 2 cut(s) 251, 372
FspI TGCGCA 1 cut(s) 254
GlaI GCGC 3 cut(s) 149, 156, 254
GluI GCNGC 2 cut(s) 251, 372
HaeIII GGCC 6 cut(s) 117, 139, 165, 318, 374, 655
HapII CCGG 8 cut(s) 105, 140, 377, 404, 617, 647, 656, 697
HhaI GCGC 3 cut(s) 150, 157, 255
Hin1II CATG 3 cut(s) 223, 245, 767
Hin6I GCGC 3 cut(s) 148, 155, 253
HinP1I GCGC 3 cut(s) 148, 155, 253
HinfI GANTC 2 cut(s) 334, 416
HpaII CCGG 8 cut(s) 105, 140, 377, 404, 617, 647, 656, 697
HphI GGTGA 2 cut(s) 290, 790
Hpy166II GTNNAC 4 cut(s) 204, 357, 439, 726
Hpy188III TCNNGA 3 cut(s) 126, 322, 331
Hpy8I GTNNAC 4 cut(s) 204, 357, 439, 726
HpyAV CCTTC 3 cut(s) 234, 768, 777
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 3 cut(s) 21, 175, 246
HpyCH4V TGCA 2 cut(s) 18, 439
HpyF10VI GCNNNNNNNGC 6 cut(s) 114, 145, 154, 176, 476, 586
HpyF3I CTNAG 3 cut(s) 452, 630, 689
HpySE526I ACGT 3 cut(s) 21, 175, 246
Hsp92II CATG 3 cut(s) 223, 245, 767
HspAI GCGC 3 cut(s) 148, 155, 253
Kzo9I GATC 2 cut(s) 122, 607
LmnI GCTCC 2 cut(s) 586, 640
Lsp1109I GCAGC 1 cut(s) 237
MaeII ACGT 3 cut(s) 21, 175, 246
MaeIII GTNAC 3 cut(s) 158, 343, 461
MalI GATC 2 cut(s) 124, 609
MboI GATC 2 cut(s) 122, 607
MboII GAAGA 2 cut(s) 718, 781
MhlI GDGCHC 2 cut(s) 441, 616
MluCI AATT 1 cut(s) 817
MmeI TCCRAC 1 cut(s) 393
MseI TTAA 2 cut(s) 534, 675
MspI CCGG 8 cut(s) 105, 140, 377, 404, 617, 647, 656, 697
MspR9I CCNGG 7 cut(s) 105, 133, 141, 377, 617, 618, 698
MvaI CCWGG 1 cut(s) 133
MvnI CGCG 3 cut(s) 148, 157, 366
MwoI GCNNNNNNNGC 6 cut(s) 114, 145, 154, 176, 476, 586
NciI CCSGG 6 cut(s) 105, 141, 377, 617, 618, 698
NdeII GATC 2 cut(s) 122, 607
NlaIII CATG 3 cut(s) 223, 245, 767
NlaIV GGNNCC 5 cut(s) 109, 375, 601, 642, 695
NmuCI GTSAC 1 cut(s) 343
NsbI TGCGCA 1 cut(s) 254
NspI RCATGY 1 cut(s) 223
PfeI GAWTC 2 cut(s) 334, 416
PkrI GCNGC 2 cut(s) 252, 373
Psp1406I AACGTT 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 5 cut(s) 109, 375, 601, 642, 695
PspPI GGNCC 2 cut(s) 316, 373
RsaI GTAC 2 cut(s) 356, 515
RsaNI GTAC 2 cut(s) 355, 514
SaqAI TTAA 2 cut(s) 534, 675
SatI GCNGC 2 cut(s) 251, 372
Sau3AI GATC 2 cut(s) 122, 607
Sau96I GGNCC 2 cut(s) 316, 373
ScrFI CCNGG 7 cut(s) 105, 133, 141, 377, 617, 618, 698
SduI GDGCHC 2 cut(s) 441, 616
SfcI CTRYAG 3 cut(s) 79, 298, 547
SmaI CCCGGG 1 cut(s) 618
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 1 cut(s) 817
SsiI CCGC 4 cut(s) 371, 479, 572, 635
StyD4I CCNGG 7 cut(s) 103, 131, 139, 375, 615, 616, 696
StyI CCWWGG 2 cut(s) 118, 603
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 3 cut(s) 24, 178, 249
TaqI TCGA 2 cut(s) 419, 610
TasI AATT 1 cut(s) 817
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 2 cut(s) 334, 416
Tru1I TTAA 2 cut(s) 534, 675
Tru9I TTAA 2 cut(s) 534, 675
TscAI CASTG 3 cut(s) 187, 477, 688
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 1 cut(s) 250
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 2 cut(s) 68, 443
TspMI CCCGGG 1 cut(s) 616
TspRI CASTG 3 cut(s) 187, 477, 688
VneI GTGCAC 1 cut(s) 437
XapI RAATTY 1 cut(s) 817
XceI RCATGY 1 cut(s) 223
XcmI CCANNNNNNNNNTGG 1 cut(s) 266
XmaI CCCGGG 1 cut(s) 616
XmiI GTMKAC 1 cut(s) 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.