Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023199.1

Orthogroup ID

OG0001421

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1530

Gene Structure 1530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023199.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 836 bp

ctaatgacctctccgccccgcctctcttcaagcaaccgccgctcgacatggatggcgaggatccctacaaccagatcatacggtgcccgctgcagtccggagacggctttaggggtcggttcttgaaggaatattgggtcatataccatgctgaaatgggagtgcaacgttggtttatttacgacaacaatagtgatgatgaaactgatgttgttattgagcttctacagagtgggaactacaacattacccggcacctctggccttggatcaagacccaggaggccgggttcgcgcattgcgcgttacggccacgcaagacgtgccagtggtccaagtatggttatggtgaggttcaggcttggtgctatagttttgggcagtcgggcctcaagagtgtcccgattcagggcgtgacggtagggtacacttgtcgcgtggcggccccggataggcacaagagcattgtgaagccggaggcgttggattcgacattgatgaatgtggtgcaccatttcaaacttagaaatgtgtgggaggtttttaaggagaagttctataggagagtggcgacctatgtggcggactggcaggaggagcagaatgtgggttccaaggatcgagccccgggattggggactaaggcggtggagccaccggattggccggagaggttttgcgaggttaatgacactggacttaggaaccgggtgttgaagaacttggctgacccgtatacaaggcttttgccgtggcaggagggctatcaaaaacatgagaagagaagggtgagaaggagaaagagaaagagacgaaagcatagagggaatttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_92 zf-C3HC4

Protein Analysis

277

Amino Acids

32.56

Weight (kDa)

9.42

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27330 AT5G40720 AT5G40720 AT5G40720
fragaria_vesca	FvH4_6g52450 FvH4_6g52460 FvH4_6g52470 FvH4_6g52470
malus_domestica	MD09G1017800.v1.1 MD09G1017900.v1.1 MD17G1018600.v1.1
prunus_persica	Prupe.3G299100_v2.0.a1
pyrus_communis	pycom111g01480 pycom111g01490 pycom17g01530
rosa_chinensis	RchiOBHm_Chr2g0174091 RchiOBHm_Chr2g0174101 RchiOBHm_Chr2g0174111
rosa_laevigata	RLG00000021621 RLG00000022246 RLG00000022247
rosa_multiflora	Rmu_co8270263.1_g000001 Rmu_co8399791.1_g000001 Rmu_sc0003016.1_g000002 Rmu_sc0003016.1_g000003 Rmu_sc0003188.1_g000035 Rmu_sc0003188.1_g000036 Rmu_sc0012378.1_g000002 Rmu_sc0023199.1_g000001 Rmu_sc0023199.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078450 Rroxscaffold_2G00078460 Rroxscaffold_2G00084880
rosa_rugosa	Rorug02G0523200 Rorug02G0574700 Rorug02G0574700
rosa_samantha	Rh2AG589300 Rh2AG654100 Rh2AG654200 Rh2AG654300 Rh2BG601500 Rh2BG665300 Rh2BG665400 Rh2BG665500 Rh2CG572000 Rh2CG629600 Rh2CG629700 Rh2DG611900 Rh2DG612000 Rh2DG680000 Rh2DG680100
rosa_wichuraiana	Rw2G053700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	83, 254
AccBSI	CCGCTC	1 cut(s)	42
AccI	GTMKAC	1 cut(s)	736
AccII	CGCG	3 cut(s)	295, 304, 437
AccIII	TCCGGA	1 cut(s)	97
AciI	CCGC	8 cut(s)	14, 19, 37, 40, 88, 442, 583, 646
AclI	AACGTT	1 cut(s)	168
AclWI	GGATC	4 cut(s)	55, 68, 277, 626
AcoI	YGGCCR	2 cut(s)	310, 664
AcsI	RAATTY	1 cut(s)	828
AfaI	GTAC	1 cut(s)	427
AfiI	CCNNNNNNNGG	5 cut(s)	408, 409, 452, 633, 634
AgsI	TTSAA	4 cut(s)	30, 126, 519, 717
AjiI	CACGTC	1 cut(s)	323
AjnI	CCWGG	1 cut(s)	278
AloI	GAACNNNNNNTCC	2 cut(s)	274, 306
AluBI	AGCT	1 cut(s)	222
AluI	AGCT	1 cut(s)	222
Alw21I	GWGCWC	1 cut(s)	512
Alw26I	GTCTC	2 cut(s)	95, 804
Alw44I	GTGCAC	1 cut(s)	508
AlwI	GGATC	4 cut(s)	55, 68, 277, 626
Ama87I	CYCGRG	1 cut(s)	627
Aor13HI	TCCGGA	1 cut(s)	97
AoxI	GGCC	6 cut(s)	262, 284, 310, 387, 443, 664
ApaLI	GTGCAC	1 cut(s)	508
ApeKI	GCWGC	1 cut(s)	90
ApoI	RAATTY	1 cut(s)	828
AspLEI	GCGC	2 cut(s)	297, 304
AspS9I	GGNCC	3 cut(s)	332, 387, 444
AsuC2I	CCSGG	6 cut(s)	252, 288, 448, 628, 629, 709
AsuHPI	GGTGA	2 cut(s)	361, 801
AvaI	CYCGRG	1 cut(s)	627
AvaII	GGWCC	1 cut(s)	332
BaeGI	GKGCMC	2 cut(s)	88, 512
BaeI	ACNNNNGTAYC	2 cut(s)	417, 450
BamHI	GGATCC	1 cut(s)	60
BanI	GGYRCC	2 cut(s)	83, 254
BanII	GRGCYC	1 cut(s)	627
Bbv12I	GWGCWC	1 cut(s)	512
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	3 cut(s)	120, 325, 735
BciT130I	CCWGG	1 cut(s)	280
BcnI	CCSGG	6 cut(s)	252, 288, 448, 628, 629, 709
BcoDI	GTCTC	2 cut(s)	95, 804
BfmI	CTRYAG	4 cut(s)	91, 226, 369, 558
BisI	GCNGC	3 cut(s)	40, 91, 443
BlsI	GCNGC	3 cut(s)	41, 92, 444
Bme1390I	CCNGG	7 cut(s)	252, 280, 288, 448, 628, 629, 709
Bme18I	GGWCC	1 cut(s)	332
BmeT110I	CYCGRG	1 cut(s)	627
BmgBI	CACGTC	1 cut(s)	323
BmgT120I	GGNCC	3 cut(s)	332, 387, 444
BmiI	GGNNCC	7 cut(s)	62, 85, 256, 446, 612, 653, 706
BmrFI	CCNGG	7 cut(s)	252, 280, 288, 448, 628, 629, 709
BpuEI	CTTGAG	1 cut(s)	376
BpuMI	CCSGG	6 cut(s)	252, 288, 448, 628, 629, 709
BsaJI	CCNNGG	7 cut(s)	265, 278, 446, 614, 626, 627, 751
BsaWI	WCCGGW	2 cut(s)	97, 657
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	5 cut(s)	408, 409, 452, 633, 634
Bse1I	ACTGG	3 cut(s)	327, 592, 699
Bse3DI	GCAATG	1 cut(s)	297
BseAI	TCCGGA	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	7 cut(s)	265, 278, 446, 614, 626, 627, 751
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	5 cut(s)	408, 409, 452, 633, 634
BseMI	GCAATG	1 cut(s)	297
BseNI	ACTGG	3 cut(s)	327, 592, 699
BseRI	GAGGAG	1 cut(s)	610
BseSI	GKGCMC	2 cut(s)	88, 512
BseXI	GCAGC	1 cut(s)	77
Bsh1236I	CGCG	3 cut(s)	295, 304, 437
BshFI	GGCC	6 cut(s)	264, 286, 312, 389, 445, 666
BshNI	GGYRCC	2 cut(s)	83, 254
BsiHKAI	GWGCWC	1 cut(s)	512
BsiHKCI	CYCGRG	1 cut(s)	627
BsiSI	CCGG	9 cut(s)	98, 252, 287, 448, 475, 628, 658, 667, 708
BslFI	GGGAC	2 cut(s)	385, 651
BslI	CCNNNNNNNGG	5 cut(s)	408, 409, 452, 633, 634
BsmAI	GTCTC	2 cut(s)	95, 804
BsmBI	CGTCTC	2 cut(s)	95, 804
BsmFI	GGGAC	2 cut(s)	385, 651
BsnI	GGCC	6 cut(s)	264, 286, 312, 389, 445, 666
BsoBI	CYCGRG	1 cut(s)	627
Bsp1286I	GDGCHC	3 cut(s)	88, 512, 627
Bsp13I	TCCGGA	1 cut(s)	97
Bsp143I	GATC	4 cut(s)	60, 74, 269, 618
BspACI	CCGC	8 cut(s)	14, 19, 37, 40, 88, 442, 583, 646
BspANI	GGCC	6 cut(s)	264, 286, 312, 389, 445, 666
BspEI	TCCGGA	1 cut(s)	97
BspFNI	CGCG	3 cut(s)	295, 304, 437
BspLI	GGNNCC	7 cut(s)	62, 85, 256, 446, 612, 653, 706
BspMAI	CTGCAG	1 cut(s)	95
BspPI	GGATC	4 cut(s)	55, 68, 277, 626
BspT107I	GGYRCC	2 cut(s)	83, 254
BsrBI	CCGCTC	1 cut(s)	42
BsrDI	GCAATG	1 cut(s)	297
BsrI	ACTGG	3 cut(s)	327, 592, 699
BssECI	CCNNGG	7 cut(s)	265, 278, 446, 614, 626, 627, 751
BssMI	GATC	4 cut(s)	60, 74, 269, 618
BssNAI	GTATAC	1 cut(s)	737
BssT1I	CCWWGG	2 cut(s)	265, 614
Bst1107I	GTATAC	1 cut(s)	737
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	2 cut(s)	83, 420
Bst6I	CTCTTC	2 cut(s)	31, 775
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	3 cut(s)	523, 641, 700
BstDSI	CCRYGG	1 cut(s)	751
BstF5I	GGATG	1 cut(s)	57
BstFNI	CGCG	3 cut(s)	295, 304, 437
BstHHI	GCGC	2 cut(s)	297, 304
BstKTI	GATC	4 cut(s)	63, 77, 272, 621
BstMAI	GTCTC	2 cut(s)	95, 804
BstMBI	GATC	4 cut(s)	60, 74, 269, 618
BstMWI	GCNNNNNNNGC	6 cut(s)	39, 261, 292, 301, 323, 597
BstNI	CCWGG	1 cut(s)	280
BstSCI	CCNGG	7 cut(s)	250, 278, 286, 446, 626, 627, 707
BstSFI	CTRYAG	4 cut(s)	91, 226, 369, 558
BstSLI	GKGCMC	2 cut(s)	88, 512
BstUI	CGCG	3 cut(s)	295, 304, 437
BstV1I	GCAGC	1 cut(s)	77
BstX2I	RGATCY	1 cut(s)	60
BstXI	CCANNNNNNTGG	1 cut(s)	662
BstYI	RGATCY	1 cut(s)	60
BstZ17I	GTATAC	1 cut(s)	737
BsuRI	GGCC	6 cut(s)	264, 286, 312, 389, 445, 666
BtgI	CCRYGG	1 cut(s)	751
BtrI	CACGTC	1 cut(s)	323
BtsCI	GGATG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	334, 692
Cac8I	GCNNGC	1 cut(s)	88
CfoI	GCGC	2 cut(s)	297, 304
Cfr13I	GGNCC	3 cut(s)	332, 387, 444
Cfr9I	CCCGGG	1 cut(s)	627
Csp6I	GTAC	1 cut(s)	426
CviAII	CATG	3 cut(s)	48, 148, 775
CviQI	GTAC	1 cut(s)	426
DdeI	CTNAG	3 cut(s)	523, 641, 700
DpnI	GATC	4 cut(s)	62, 76, 271, 620
DpnII	GATC	4 cut(s)	60, 74, 269, 618
EaeI	YGGCCR	2 cut(s)	310, 664
Eam1104I	CTCTTC	2 cut(s)	31, 775
EarI	CTCTTC	2 cut(s)	31, 775
EciI	GGCGGA	1 cut(s)	598
Eco130I	CCWWGG	2 cut(s)	265, 614
Eco24I	GRGCYC	1 cut(s)	627
Eco47I	GGWCC	1 cut(s)	332
Eco88I	CYCGRG	1 cut(s)	627
EcoRII	CCWGG	1 cut(s)	278
EcoT14I	CCWWGG	2 cut(s)	265, 614
EcoT38I	GRGCYC	1 cut(s)	627
ErhI	CCWWGG	2 cut(s)	265, 614
Esp3I	CGTCTC	2 cut(s)	95, 804
FaeI	CATG	3 cut(s)	51, 151, 778
FaqI	GGGAC	2 cut(s)	385, 651
FatI	CATG	3 cut(s)	47, 147, 774
FauI	CCCGC	2 cut(s)	26, 95
FblI	GTMKAC	1 cut(s)	736
Fnu4HI	GCNGC	3 cut(s)	40, 91, 443
FokI	GGATG	1 cut(s)	64
FriOI	GRGCYC	1 cut(s)	627
Fsp4HI	GCNGC	3 cut(s)	40, 91, 443
GlaI	GCGC	2 cut(s)	296, 303
GluI	GCNGC	3 cut(s)	40, 91, 443
HaeIII	GGCC	6 cut(s)	264, 286, 312, 389, 445, 666
HapII	CCGG	9 cut(s)	98, 252, 287, 448, 475, 628, 658, 667, 708
HhaI	GCGC	2 cut(s)	297, 304
Hin1II	CATG	3 cut(s)	51, 151, 778
Hin6I	GCGC	2 cut(s)	295, 302
HinP1I	GCGC	2 cut(s)	295, 302
HinfI	GANTC	2 cut(s)	405, 487
HpaII	CCGG	9 cut(s)	98, 252, 287, 448, 475, 628, 658, 667, 708
HphI	GGTGA	2 cut(s)	361, 801
Hpy166II	GTNNAC	3 cut(s)	428, 510, 737
Hpy188III	TCNNGA	5 cut(s)	98, 123, 273, 393, 402
Hpy8I	GTNNAC	3 cut(s)	428, 510, 737
HpyAV	CCTTC	3 cut(s)	120, 779, 788
HpyCH4III	ACNGT	2 cut(s)	83, 420
HpyCH4IV	ACGT	2 cut(s)	168, 322
HpyCH4V	TGCA	3 cut(s)	93, 165, 510
HpyF10VI	GCNNNNNNNGC	6 cut(s)	39, 261, 292, 301, 323, 597
HpyF3I	CTNAG	3 cut(s)	523, 641, 700
HpySE526I	ACGT	2 cut(s)	168, 322
Hsp92II	CATG	3 cut(s)	51, 151, 778
HspAI	GCGC	2 cut(s)	295, 302
Kpn2I	TCCGGA	1 cut(s)	97
Kzo9I	GATC	4 cut(s)	60, 74, 269, 618
LmnI	GCTCC	2 cut(s)	597, 651
Lsp1109I	GCAGC	1 cut(s)	77
MaeII	ACGT	2 cut(s)	168, 322
MaeIII	GTNAC	2 cut(s)	305, 414
MalI	GATC	4 cut(s)	62, 76, 271, 620
MbiI	CCGCTC	1 cut(s)	42
MboI	GATC	4 cut(s)	60, 74, 269, 618
MboII	GAAGA	3 cut(s)	18, 729, 792
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	3 cut(s)	88, 512, 627
MluCI	AATT	1 cut(s)	828
MmeI	TCCRAC	1 cut(s)	464
MroI	TCCGGA	1 cut(s)	97
MseI	TTAA	2 cut(s)	545, 686
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	9 cut(s)	98, 252, 287, 448, 475, 628, 658, 667, 708
MspR9I	CCNGG	7 cut(s)	252, 280, 288, 448, 628, 629, 709
MvaI	CCWGG	1 cut(s)	280
MvnI	CGCG	3 cut(s)	295, 304, 437
MwoI	GCNNNNNNNGC	6 cut(s)	39, 261, 292, 301, 323, 597
NciI	CCSGG	6 cut(s)	252, 288, 448, 628, 629, 709
NdeII	GATC	4 cut(s)	60, 74, 269, 618
NlaIII	CATG	3 cut(s)	51, 151, 778
NlaIV	GGNNCC	7 cut(s)	62, 85, 256, 446, 612, 653, 706
NmuCI	GTSAC	1 cut(s)	414
PfeI	GAWTC	2 cut(s)	405, 487
PkrI	GCNGC	3 cut(s)	41, 92, 444
Psp1406I	AACGTT	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	7 cut(s)	62, 85, 256, 446, 612, 653, 706
PspPI	GGNCC	3 cut(s)	332, 387, 444
PstI	CTGCAG	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	60
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
SaqAI	TTAA	2 cut(s)	545, 686
SatI	GCNGC	3 cut(s)	40, 91, 443
Sau3AI	GATC	4 cut(s)	60, 74, 269, 618
Sau96I	GGNCC	3 cut(s)	332, 387, 444
ScrFI	CCNGG	7 cut(s)	252, 280, 288, 448, 628, 629, 709
SduI	GDGCHC	3 cut(s)	88, 512, 627
SfcI	CTRYAG	4 cut(s)	91, 226, 369, 558
SinI	GGWCC	1 cut(s)	332
SmaI	CCCGGG	1 cut(s)	629
SmlI	CTYRAG	1 cut(s)	391
SmoI	CTYRAG	1 cut(s)	391
Sse9I	AATT	1 cut(s)	828
SsiI	CCGC	8 cut(s)	14, 19, 37, 40, 88, 442, 583, 646
SspI	AATATT	1 cut(s)	133
StyD4I	CCNGG	7 cut(s)	250, 278, 286, 446, 626, 627, 707
StyI	CCWWGG	2 cut(s)	265, 614
TaaI	ACNGT	2 cut(s)	83, 420
TaiI	ACGT	2 cut(s)	171, 325
TaqI	TCGA	3 cut(s)	44, 490, 621
TasI	AATT	1 cut(s)	828
TauI	GCSGC	2 cut(s)	42, 445
TfiI	GAWTC	2 cut(s)	405, 487
Tru1I	TTAA	2 cut(s)	545, 686
Tru9I	TTAA	2 cut(s)	545, 686
TscAI	CASTG	2 cut(s)	334, 699
TseFI	GTSAC	1 cut(s)	414
TseI	GCWGC	1 cut(s)	90
Tsp45I	GTSAC	1 cut(s)	414
TspDTI	ATGAA	2 cut(s)	215, 514
TspMI	CCCGGG	1 cut(s)	627
TspRI	CASTG	2 cut(s)	334, 699
VneI	GTGCAC	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	1 cut(s)	828
XmaI	CCCGGG	1 cut(s)	627
XmiI	GTMKAC	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.