Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003188.1

Orthogroup ID

OG0001421

Physical Location & Seq

Genomic Coordinates Forward (+)

171158 .. 171974

Gene Structure 817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003188.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atggtagtgcaacgttggtttatttacgacaacaatagtgatgatgaaactgatgttgttattgagcttctacagagtgggaactacaacattacccggcacctctggccttggatcaagacccaggaggccgggttcgcgcattgcgcgttacggccacgcaagacgtgccagtgggcttggtgctatcgttttgggcagtcgggcctcaagagtgtcccgattcagggcgtgacggtagggtacacttgtcgcgtggcggccccggataggcacaagagcattgtgaagccggaggcgttggattcgacattgatgaatgtggtgcaccatttcaaacttagaaatggttacgaggcagtgaaagcggataggggagtgttggttatcaatcactgcaagtacctagtgtgggaggtttttaaggagaagttctataggagagtggcgacctatgtggcggactggcaggaggagcagaatgtgggttccaaggatcgagccccgggattggggactaaggcggtggagccaccggattggccggagaggttttgcgaggttaatgacactggacttaggaaccgggtgttgaagaacttggctgacccgtatacaaggcttttgccgtggcaggagggctatcaaaaacatgagaagagaagggtgagaaggagaaagagaaagagacgaaagcatagagggaatttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_92 zf-C3HC4

Protein Analysis

237

Amino Acids

27.96

Weight (kDa)

9.79

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27330 AT5G40720 AT5G40720 AT5G40720
fragaria_vesca	FvH4_6g52450 FvH4_6g52460 FvH4_6g52470 FvH4_6g52470
malus_domestica	MD09G1017800.v1.1 MD09G1017900.v1.1 MD17G1018600.v1.1
prunus_persica	Prupe.3G299100_v2.0.a1
pyrus_communis	pycom111g01480 pycom111g01490 pycom17g01530
rosa_chinensis	RchiOBHm_Chr2g0174091 RchiOBHm_Chr2g0174101 RchiOBHm_Chr2g0174111
rosa_laevigata	RLG00000021621 RLG00000022246 RLG00000022247
rosa_multiflora	Rmu_co8270263.1_g000001 Rmu_co8399791.1_g000001 Rmu_sc0003016.1_g000002 Rmu_sc0003016.1_g000003 Rmu_sc0003188.1_g000035 Rmu_sc0003188.1_g000036 Rmu_sc0012378.1_g000002 Rmu_sc0023199.1_g000001 Rmu_sc0023199.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078450 Rroxscaffold_2G00078460 Rroxscaffold_2G00084880
rosa_rugosa	Rorug02G0523200 Rorug02G0574700 Rorug02G0574700
rosa_samantha	Rh2AG589300 Rh2AG654100 Rh2AG654200 Rh2AG654300 Rh2BG601500 Rh2BG665300 Rh2BG665400 Rh2BG665500 Rh2CG572000 Rh2CG629600 Rh2CG629700 Rh2DG611900 Rh2DG612000 Rh2DG680000 Rh2DG680100
rosa_wichuraiana	Rw2G053700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	614
AccII	CGCG	3 cut(s)	140, 149, 255
AciI	CCGC	4 cut(s)	260, 368, 461, 524
AclI	AACGTT	1 cut(s)	13
AclWI	GGATC	2 cut(s)	122, 504
AcoI	YGGCCR	2 cut(s)	155, 542
AcsI	RAATTY	1 cut(s)	706
AfaI	GTAC	2 cut(s)	245, 404
AfiI	CCNNNNNNNGG	6 cut(s)	226, 227, 270, 412, 511, 512
AgsI	TTSAA	2 cut(s)	337, 595
AjiI	CACGTC	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	123
AloI	GAACNNNNNNTCC	2 cut(s)	119, 151
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	682
Alw44I	GTGCAC	1 cut(s)	326
AlwI	GGATC	2 cut(s)	122, 504
Ama87I	CYCGRG	1 cut(s)	505
AoxI	GGCC	6 cut(s)	107, 129, 155, 205, 261, 542
ApaLI	GTGCAC	1 cut(s)	326
ApoI	RAATTY	1 cut(s)	706
AspLEI	GCGC	2 cut(s)	142, 149
AspS9I	GGNCC	2 cut(s)	205, 262
AsuC2I	CCSGG	6 cut(s)	97, 133, 266, 506, 507, 587
AsuHPI	GGTGA	1 cut(s)	679
AvaI	CYCGRG	1 cut(s)	505
BaeGI	GKGCMC	1 cut(s)	330
BaeI	ACNNNNGTAYC	2 cut(s)	235, 268
BanI	GGYRCC	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	505
Bbv12I	GWGCWC	1 cut(s)	330
BceAI	ACGGC	2 cut(s)	170, 613
BciT130I	CCWGG	1 cut(s)	125
BcnI	CCSGG	6 cut(s)	97, 133, 266, 506, 507, 587
BcoDI	GTCTC	1 cut(s)	682
BfaI	CTAG	1 cut(s)	407
BfmI	CTRYAG	2 cut(s)	71, 436
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	7 cut(s)	97, 125, 133, 266, 506, 507, 587
BmeT110I	CYCGRG	1 cut(s)	505
BmgBI	CACGTC	1 cut(s)	168
BmgT120I	GGNCC	2 cut(s)	205, 262
BmiI	GGNNCC	5 cut(s)	101, 264, 490, 531, 584
BmrFI	CCNGG	7 cut(s)	97, 125, 133, 266, 506, 507, 587
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	6 cut(s)	97, 133, 266, 506, 507, 587
BsaJI	CCNNGG	7 cut(s)	110, 123, 264, 492, 504, 505, 629
BsaWI	WCCGGW	1 cut(s)	535
BsaXI	ACNNNNNCTCC	4 cut(s)	119, 149, 369, 399
Bsc4I	CCNNNNNNNGG	6 cut(s)	226, 227, 270, 412, 511, 512
Bse1I	ACTGG	3 cut(s)	172, 470, 577
Bse3DI	GCAATG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	7 cut(s)	110, 123, 264, 492, 504, 505, 629
BseLI	CCNNNNNNNGG	6 cut(s)	226, 227, 270, 412, 511, 512
BseMI	GCAATG	1 cut(s)	142
BseNI	ACTGG	3 cut(s)	172, 470, 577
BseRI	GAGGAG	1 cut(s)	488
BseSI	GKGCMC	1 cut(s)	330
Bsh1236I	CGCG	3 cut(s)	140, 149, 255
BshFI	GGCC	6 cut(s)	109, 131, 157, 207, 263, 544
BshNI	GGYRCC	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	330
BsiHKCI	CYCGRG	1 cut(s)	505
BsiSI	CCGG	8 cut(s)	97, 132, 266, 293, 506, 536, 545, 586
BslFI	GGGAC	2 cut(s)	203, 529
BslI	CCNNNNNNNGG	6 cut(s)	226, 227, 270, 412, 511, 512
BsmAI	GTCTC	1 cut(s)	682
BsmBI	CGTCTC	1 cut(s)	682
BsmFI	GGGAC	2 cut(s)	203, 529
BsnI	GGCC	6 cut(s)	109, 131, 157, 207, 263, 544
BsoBI	CYCGRG	1 cut(s)	505
Bsp1286I	GDGCHC	2 cut(s)	330, 505
Bsp143I	GATC	2 cut(s)	114, 496
BspACI	CCGC	4 cut(s)	260, 368, 461, 524
BspANI	GGCC	6 cut(s)	109, 131, 157, 207, 263, 544
BspFNI	CGCG	3 cut(s)	140, 149, 255
BspLI	GGNNCC	5 cut(s)	101, 264, 490, 531, 584
BspPI	GGATC	2 cut(s)	122, 504
BspT107I	GGYRCC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	142
BsrI	ACTGG	3 cut(s)	172, 470, 577
BssECI	CCNNGG	7 cut(s)	110, 123, 264, 492, 504, 505, 629
BssMI	GATC	2 cut(s)	114, 496
BssNAI	GTATAC	1 cut(s)	615
BssT1I	CCWWGG	2 cut(s)	110, 492
Bst1107I	GTATAC	1 cut(s)	615
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	653
BstAPI	GCANNNNNTGC	1 cut(s)	168
BstDEI	CTNAG	3 cut(s)	341, 519, 578
BstDSI	CCRYGG	1 cut(s)	629
BstFNI	CGCG	3 cut(s)	140, 149, 255
BstHHI	GCGC	2 cut(s)	142, 149
BstKTI	GATC	2 cut(s)	117, 499
BstMAI	GTCTC	1 cut(s)	682
BstMBI	GATC	2 cut(s)	114, 496
BstMWI	GCNNNNNNNGC	6 cut(s)	106, 137, 146, 168, 365, 475
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	7 cut(s)	95, 123, 131, 264, 504, 505, 585
BstSFI	CTRYAG	2 cut(s)	71, 436
BstSLI	GKGCMC	1 cut(s)	330
BstUI	CGCG	3 cut(s)	140, 149, 255
BstXI	CCANNNNNNTGG	1 cut(s)	540
BstZ17I	GTATAC	1 cut(s)	615
BsuRI	GGCC	6 cut(s)	109, 131, 157, 207, 263, 544
BtgI	CCRYGG	1 cut(s)	629
BtrI	CACGTC	1 cut(s)	168
BtsI	GCAGTG	2 cut(s)	366, 394
BtsIMutI	CAGTG	4 cut(s)	179, 366, 394, 570
CfoI	GCGC	2 cut(s)	142, 149
Cfr13I	GGNCC	2 cut(s)	205, 262
Cfr9I	CCCGGG	1 cut(s)	505
Csp6I	GTAC	2 cut(s)	244, 403
CviAII	CATG	1 cut(s)	653
CviQI	GTAC	2 cut(s)	244, 403
DdeI	CTNAG	3 cut(s)	341, 519, 578
DpnI	GATC	2 cut(s)	116, 498
DpnII	GATC	2 cut(s)	114, 496
EaeI	YGGCCR	2 cut(s)	155, 542
Eam1104I	CTCTTC	1 cut(s)	653
EarI	CTCTTC	1 cut(s)	653
EciI	GGCGGA	1 cut(s)	476
Eco130I	CCWWGG	2 cut(s)	110, 492
Eco24I	GRGCYC	1 cut(s)	505
Eco88I	CYCGRG	1 cut(s)	505
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	2 cut(s)	110, 492
EcoT38I	GRGCYC	1 cut(s)	505
ErhI	CCWWGG	2 cut(s)	110, 492
Esp3I	CGTCTC	1 cut(s)	682
FaeI	CATG	1 cut(s)	656
FaiI	YATR	6 cut(s)	438, 456, 615, 654, 699, 712
FaqI	GGGAC	2 cut(s)	203, 529
FatI	CATG	1 cut(s)	652
FblI	GTMKAC	1 cut(s)	614
Fnu4HI	GCNGC	1 cut(s)	261
FriOI	GRGCYC	1 cut(s)	505
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	1 cut(s)	407
GlaI	GCGC	2 cut(s)	141, 148
GluI	GCNGC	1 cut(s)	261
HaeIII	GGCC	6 cut(s)	109, 131, 157, 207, 263, 544
HapII	CCGG	8 cut(s)	97, 132, 266, 293, 506, 536, 545, 586
HhaI	GCGC	2 cut(s)	142, 149
Hin1II	CATG	1 cut(s)	656
Hin6I	GCGC	2 cut(s)	140, 147
HinP1I	GCGC	2 cut(s)	140, 147
HinfI	GANTC	2 cut(s)	223, 305
HpaII	CCGG	8 cut(s)	97, 132, 266, 293, 506, 536, 545, 586
HphI	GGTGA	1 cut(s)	679
Hpy166II	GTNNAC	3 cut(s)	246, 328, 615
Hpy188III	TCNNGA	3 cut(s)	118, 211, 220
Hpy8I	GTNNAC	3 cut(s)	246, 328, 615
HpyAV	CCTTC	2 cut(s)	657, 666
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	2 cut(s)	13, 167
HpyCH4V	TGCA	3 cut(s)	10, 328, 399
HpyF10VI	GCNNNNNNNGC	6 cut(s)	106, 137, 146, 168, 365, 475
HpyF3I	CTNAG	3 cut(s)	341, 519, 578
HpySE526I	ACGT	2 cut(s)	13, 167
Hsp92II	CATG	1 cut(s)	656
HspAI	GCGC	2 cut(s)	140, 147
Kzo9I	GATC	2 cut(s)	114, 496
LmnI	GCTCC	2 cut(s)	475, 529
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	2 cut(s)	13, 167
MaeIII	GTNAC	3 cut(s)	150, 232, 350
MalI	GATC	2 cut(s)	116, 498
MboI	GATC	2 cut(s)	114, 496
MboII	GAAGA	2 cut(s)	607, 670
MhlI	GDGCHC	2 cut(s)	330, 505
MluCI	AATT	1 cut(s)	706
MmeI	TCCRAC	1 cut(s)	282
MseI	TTAA	2 cut(s)	423, 564
MspI	CCGG	8 cut(s)	97, 132, 266, 293, 506, 536, 545, 586
MspR9I	CCNGG	7 cut(s)	97, 125, 133, 266, 506, 507, 587
MvaI	CCWGG	1 cut(s)	125
MvnI	CGCG	3 cut(s)	140, 149, 255
MwoI	GCNNNNNNNGC	6 cut(s)	106, 137, 146, 168, 365, 475
NciI	CCSGG	6 cut(s)	97, 133, 266, 506, 507, 587
NdeII	GATC	2 cut(s)	114, 496
NlaIII	CATG	1 cut(s)	656
NlaIV	GGNNCC	5 cut(s)	101, 264, 490, 531, 584
NmuCI	GTSAC	1 cut(s)	232
PfeI	GAWTC	2 cut(s)	223, 305
PkrI	GCNGC	1 cut(s)	262
Psp1406I	AACGTT	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	5 cut(s)	101, 264, 490, 531, 584
PspPI	GGNCC	2 cut(s)	205, 262
RsaI	GTAC	2 cut(s)	245, 404
RsaNI	GTAC	2 cut(s)	244, 403
SaqAI	TTAA	2 cut(s)	423, 564
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	2 cut(s)	114, 496
Sau96I	GGNCC	2 cut(s)	205, 262
ScrFI	CCNGG	7 cut(s)	97, 125, 133, 266, 506, 507, 587
SduI	GDGCHC	2 cut(s)	330, 505
SetI	ASST	9 cut(s)	16, 69, 105, 170, 408, 420, 455, 554, 564
SfcI	CTRYAG	2 cut(s)	71, 436
SmaI	CCCGGG	1 cut(s)	507
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	706
SsiI	CCGC	4 cut(s)	260, 368, 461, 524
SspMI	CTAG	1 cut(s)	407
StyD4I	CCNGG	7 cut(s)	95, 123, 131, 264, 504, 505, 585
StyI	CCWWGG	2 cut(s)	110, 492
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	2 cut(s)	16, 170
TaqI	TCGA	2 cut(s)	308, 499
TasI	AATT	1 cut(s)	706
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	2 cut(s)	223, 305
Tru1I	TTAA	2 cut(s)	423, 564
Tru9I	TTAA	2 cut(s)	423, 564
TscAI	CASTG	4 cut(s)	179, 366, 401, 577
TseFI	GTSAC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	2 cut(s)	60, 332
TspMI	CCCGGG	1 cut(s)	505
TspRI	CASTG	4 cut(s)	179, 366, 401, 577
VneI	GTGCAC	1 cut(s)	326
XapI	RAATTY	1 cut(s)	706
XmaI	CCCGGG	1 cut(s)	505
XmiI	GTMKAC	1 cut(s)	614
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.