Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001421

Physical Location & Seq

Genomic Coordinates Forward (+)

87158126 .. 87158800

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG654300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAGCAATGGAAGATCTTGCACCGTGAACACGGTTCTATGGAACACGATTCAGCTTCTGTTTCCTCAAGAAGTTGAAGCAAGGAAAGCAGCTGGAGCCTTGAACAGTCGTGAAGAAGGTGAGCGGGAAATCCCTGATAAGGCCTTTAGTAGTAGCAACTCGAGGAATCAAAGCAGAAGAGTATCTGGCAGAGATGTGGCTGTAAGGAGAAGAAGGGTAGTGTTGAGCCAAGATGATGATGAGGACGATCCTGCACCACTAGCTATAAGGTTACAAATGAGAGAAGCTGAGAATCAAAATCGAGAACTAGGCAGCTTGGCTCGACCAGTAAGGATATCATCAGGCAGAGAAATTAGGCCTATAAGGAGGGTATCAAGCAGAGATGCAAATCCGACGAGTAGTAGAAGGGTGCCAAACCAACATGAGGATGCTGCATTAGCTCTGAGATTACAGAGGGAGGAGTTTATGGAGGCTTTTAGGGGAACCAGTGATCAATCAAGTGTCTCTCTTTCGTTGGCTAGAGCAAACCTGAGAGCCATGGCATCTAGAGCCACTAACCATGGTGCTGCAACCCGATTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_92 zf-C3HC4

Protein Analysis

194

Amino Acids

21.76

Weight (kDa)

11.19

Isoelectric Point (pI)

70.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27330 AT5G40720 AT5G40720 AT5G40720
fragaria_vesca	FvH4_6g52450 FvH4_6g52460 FvH4_6g52470 FvH4_6g52470
malus_domestica	MD09G1017800.v1.1 MD09G1017900.v1.1 MD17G1018600.v1.1
prunus_persica	Prupe.3G299100_v2.0.a1
pyrus_communis	pycom111g01480 pycom111g01490 pycom17g01530
rosa_chinensis	RchiOBHm_Chr2g0174091 RchiOBHm_Chr2g0174101 RchiOBHm_Chr2g0174111
rosa_laevigata	RLG00000021621 RLG00000022246 RLG00000022247
rosa_multiflora	Rmu_co8270263.1_g000001 Rmu_co8399791.1_g000001 Rmu_sc0003016.1_g000002 Rmu_sc0003016.1_g000003 Rmu_sc0003188.1_g000035 Rmu_sc0003188.1_g000036 Rmu_sc0012378.1_g000002 Rmu_sc0023199.1_g000001 Rmu_sc0023199.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078450 Rroxscaffold_2G00078460 Rroxscaffold_2G00084880
rosa_rugosa	Rorug02G0523200 Rorug02G0574700 Rorug02G0574700
rosa_samantha	Rh2AG589300 Rh2AG654100 Rh2AG654200 Rh2AG654300 Rh2BG601500 Rh2BG665300 Rh2BG665400 Rh2BG665500 Rh2CG572000 Rh2CG629600 Rh2CG629700 Rh2DG611900 Rh2DG612000 Rh2DG680000 Rh2DG680100
rosa_wichuraiana	Rw2G053700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	409
AccBSI	CCGCTC	1 cut(s)	124
AciI	CCGC	1 cut(s)	124
AclWI	GGATC	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	139, 424
AgsI	TTSAA	2 cut(s)	77, 103
AluBI	AGCT	6 cut(s)	55, 92, 263, 287, 315, 440
AluI	AGCT	6 cut(s)	55, 92, 263, 287, 315, 440
Alw26I	GTCTC	1 cut(s)	508
AlwI	GGATC	1 cut(s)	242
AlwNI	CAGNNNCTG	1 cut(s)	58
Ama87I	CYCGRG	1 cut(s)	160
AoxI	GGCC	2 cut(s)	141, 356
ApeKI	GCWGC	4 cut(s)	89, 312, 431, 566
AsuHPI	GGTGA	1 cut(s)	131
AvaI	CYCGRG	1 cut(s)	160
BanI	GGYRCC	1 cut(s)	409
BbvI	GCAGC	4 cut(s)	101, 324, 418, 553
BclI	TGATCA	1 cut(s)	490
BcoDI	GTCTC	1 cut(s)	508
BfaI	CTAG	4 cut(s)	260, 308, 519, 546
BglII	AGATCT	1 cut(s)	14
BisI	GCNGC	4 cut(s)	90, 313, 432, 567
BlsI	GCNGC	4 cut(s)	91, 314, 433, 568
BmeT110I	CYCGRG	1 cut(s)	160
BmiI	GGNNCC	3 cut(s)	97, 411, 484
BmsI	GCATC	3 cut(s)	373, 418, 551
BpmI	CTGGAG	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	51
BsaBI	GATNNNNATC	1 cut(s)	387
BsaJI	CCNNGG	2 cut(s)	537, 559
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 424
Bse1I	ACTGG	2 cut(s)	326, 486
Bse3DI	GCAATG	1 cut(s)	13
Bse8I	GATNNNNATC	1 cut(s)	387
BseDI	CCNNGG	2 cut(s)	537, 559
BseGI	GGATG	1 cut(s)	433
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	2 cut(s)	139, 424
BseMI	GCAATG	1 cut(s)	13
BseMII	CTCAG	3 cut(s)	279, 434, 521
BseNI	ACTGG	2 cut(s)	326, 486
BseRI	GAGGAG	1 cut(s)	473
BseXI	GCAGC	4 cut(s)	101, 324, 418, 553
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	2 cut(s)	143, 358
BshNI	GGYRCC	1 cut(s)	409
BsiHKCI	CYCGRG	1 cut(s)	160
BslI	CCNNNNNNNGG	2 cut(s)	139, 424
BsmAI	GTCTC	1 cut(s)	508
BsnI	GGCC	2 cut(s)	143, 358
BsoBI	CYCGRG	1 cut(s)	160
Bsp143I	GATC	3 cut(s)	14, 247, 490
Bsp19I	CCATGG	2 cut(s)	537, 559
BspACI	CCGC	1 cut(s)	124
BspANI	GGCC	2 cut(s)	143, 358
BspCNI	CTCAG	3 cut(s)	280, 435, 522
BspLI	GGNNCC	3 cut(s)	97, 411, 484
BspPI	GGATC	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	409
BsrBI	CCGCTC	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	13
BsrI	ACTGG	2 cut(s)	326, 486
BssECI	CCNNGG	2 cut(s)	537, 559
BssMI	GATC	3 cut(s)	14, 247, 490
BssT1I	CCWWGG	2 cut(s)	537, 559
Bst4CI	ACNGT	3 cut(s)	25, 34, 107
Bst6I	CTCTTC	1 cut(s)	172
BstDEI	CTNAG	3 cut(s)	288, 443, 530
BstDSI	CCRYGG	2 cut(s)	537, 559
BstF5I	GGATG	1 cut(s)	433
BstKTI	GATC	3 cut(s)	17, 250, 493
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	3 cut(s)	14, 247, 490
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 95, 260, 437, 548
BstV1I	GCAGC	4 cut(s)	101, 324, 418, 553
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BsuRI	GGCC	2 cut(s)	143, 358
BtgI	CCRYGG	2 cut(s)	537, 559
BtsCI	GGATG	1 cut(s)	433
BtsIMutI	CAGTG	1 cut(s)	493
CaiI	CAGNNNCTG	1 cut(s)	58
CviAII	CATG	3 cut(s)	422, 538, 560
DdeI	CTNAG	3 cut(s)	288, 443, 530
DpnI	GATC	3 cut(s)	16, 249, 492
DpnII	GATC	3 cut(s)	14, 247, 490
Eam1104I	CTCTTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	172
Eco130I	CCWWGG	2 cut(s)	537, 559
Eco147I	AGGCCT	2 cut(s)	143, 358
Eco32I	GATATC	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	160
EcoRV	GATATC	1 cut(s)	336
EcoT14I	CCWWGG	2 cut(s)	537, 559
ErhI	CCWWGG	2 cut(s)	537, 559
FaeI	CATG	3 cut(s)	425, 541, 563
FaiI	YATR	8 cut(s)	40, 266, 362, 423, 467, 539, 561, 581
FatI	CATG	3 cut(s)	421, 537, 559
FauI	CCCGC	1 cut(s)	117
FbaI	TGATCA	1 cut(s)	490
Fnu4HI	GCNGC	4 cut(s)	90, 313, 432, 567
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	4 cut(s)	90, 313, 432, 567
FspBI	CTAG	4 cut(s)	260, 308, 519, 546
GluI	GCNGC	4 cut(s)	90, 313, 432, 567
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	143, 358
Hin1II	CATG	3 cut(s)	425, 541, 563
HinfI	GANTC	3 cut(s)	49, 166, 292
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	393, 444
Hpy188III	TCNNGA	4 cut(s)	68, 110, 302, 546
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	1 cut(s)	397
HpyAV	CCTTC	3 cut(s)	110, 207, 399
HpyCH4III	ACNGT	3 cut(s)	25, 34, 107
HpyCH4V	TGCA	5 cut(s)	21, 254, 386, 434, 569
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 95, 260, 437, 548
HpyF3I	CTNAG	3 cut(s)	288, 443, 530
Hsp92II	CATG	3 cut(s)	425, 541, 563
Ksp22I	TGATCA	1 cut(s)	490
Kzo9I	GATC	3 cut(s)	14, 247, 490
LmnI	GCTCC	1 cut(s)	95
LpnPI	CCDG	8 cut(s)	78, 147, 171, 264, 327, 339, 499, 542
Lsp1109I	GCAGC	4 cut(s)	101, 324, 418, 553
LweI	GCATC	3 cut(s)	373, 418, 551
MaeI	CTAG	4 cut(s)	260, 308, 519, 546
MaeIII	GTNAC	1 cut(s)	270
MalI	GATC	3 cut(s)	16, 249, 492
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	3 cut(s)	14, 247, 490
MboII	GAAGA	4 cut(s)	24, 125, 189, 222
MflI	RGATCY	1 cut(s)	14
MluCI	AATT	1 cut(s)	351
MmeI	TCCRAC	1 cut(s)	416
MnlI	CCTC	8 cut(s)	75, 156, 235, 360, 418, 447, 451, 463
MslI	CAYNNNNRTG	1 cut(s)	426
MspA1I	CMGCKG	1 cut(s)	92
MwoI	GCNNNNNNNGC	5 cut(s)	86, 95, 260, 437, 548
NcoI	CCATGG	2 cut(s)	537, 559
NdeII	GATC	3 cut(s)	14, 247, 490
NlaIII	CATG	3 cut(s)	425, 541, 563
NlaIV	GGNNCC	3 cut(s)	97, 411, 484
PaeR7I	CTCGAG	1 cut(s)	160
PceI	AGGCCT	2 cut(s)	143, 358
PfeI	GAWTC	3 cut(s)	49, 166, 292
PkrI	GCNGC	4 cut(s)	91, 314, 433, 568
PspN4I	GGNNCC	3 cut(s)	97, 411, 484
PspXI	VCTCGAGB	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	14
PvuII	CAGCTG	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	426
SatI	GCNGC	4 cut(s)	90, 313, 432, 567
Sau3AI	GATC	3 cut(s)	14, 247, 490
SetI	ASST	9 cut(s)	57, 94, 121, 265, 272, 289, 317, 442, 531
SfaNI	GCATC	3 cut(s)	373, 418, 551
Sfr274I	CTCGAG	1 cut(s)	160
SlaI	CTCGAG	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	2 cut(s)	66, 160
SmoI	CTYRAG	2 cut(s)	66, 160
Sse9I	AATT	1 cut(s)	351
SseBI	AGGCCT	2 cut(s)	143, 358
SsiI	CCGC	1 cut(s)	124
SspMI	CTAG	4 cut(s)	260, 308, 519, 546
StuI	AGGCCT	2 cut(s)	143, 358
StyI	CCWWGG	2 cut(s)	537, 559
TaaI	ACNGT	3 cut(s)	25, 34, 107
TaqI	TCGA	3 cut(s)	161, 301, 322
TasI	AATT	1 cut(s)	351
TfiI	GAWTC	3 cut(s)	49, 166, 292
TscAI	CASTG	1 cut(s)	493
TseI	GCWGC	4 cut(s)	89, 312, 431, 566
TspRI	CASTG	1 cut(s)	493
XbaI	TCTAGA	1 cut(s)	545
XhoI	CTCGAG	1 cut(s)	160
XspI	CTAG	4 cut(s)	260, 308, 519, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.