Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8399791.1

Orthogroup ID

OG0001421

Physical Location & Seq

Genomic Coordinates Reverse (-)

68 .. 1164

Gene Structure 1097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8399791.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atgggtgagagctctggtgcttcgtgctcaagctcgaatcttccttgcatggataagctcagggatgagctttcttgtgctatctgcttggagatttgctttgaacccagtacaactccttgtggacacagcttctgtaagaaatgccttcgatcggctgctgataaatgtgggaagaggtgccccaaatgcaggcagctaatgagcaatggaagatcttgcaccgtgaacacagttctatggaacacgattcagcttctgtttcctcaagaagttgaagcaaggaaagcagctggagccttgaacagtcgtgaagaaggtgagcgggaaatccctgataaggcctttagtagtagcaactcgaggaatcaaagcagaagagtatctggcagagatgtggctgtaaggagaagaagggtagtgttgagccaagatgatgatgaggacgatcctgcaccactagctataaggttacaaatgagagaagcagagaatcaaaatcgaggactaggcagcttggctcgaccagtaaggatatcatcaggcagagaaattaggcctataatatcaagcagagatgcaaatccgacgagtagtagaagggtgccaaaccaacatgaggatgctgcattagctctgagattacagagggaggagtttatggaggcttttaggggaaccagcagtgatcaatcaagtgcctctctttcgttggctagagcaaacctgagagccatggcatctagagccactaaccgtggtgctgcaacccgatttatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_92 zf-C3HC4

Protein Analysis

260

Amino Acids

28.67

Weight (kDa)

9.37

Isoelectric Point (pI)

68.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27330 AT5G40720 AT5G40720 AT5G40720
fragaria_vesca	FvH4_6g52450 FvH4_6g52460 FvH4_6g52470 FvH4_6g52470
malus_domestica	MD09G1017800.v1.1 MD09G1017900.v1.1 MD17G1018600.v1.1
prunus_persica	Prupe.3G299100_v2.0.a1
pyrus_communis	pycom111g01480 pycom111g01490 pycom17g01530
rosa_chinensis	RchiOBHm_Chr2g0174091 RchiOBHm_Chr2g0174101 RchiOBHm_Chr2g0174111
rosa_laevigata	RLG00000021621 RLG00000022246 RLG00000022247
rosa_multiflora	Rmu_co8270263.1_g000001 Rmu_co8399791.1_g000001 Rmu_sc0003016.1_g000002 Rmu_sc0003016.1_g000003 Rmu_sc0003188.1_g000035 Rmu_sc0003188.1_g000036 Rmu_sc0012378.1_g000002 Rmu_sc0023199.1_g000001 Rmu_sc0023199.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078450 Rroxscaffold_2G00078460 Rroxscaffold_2G00084880
rosa_rugosa	Rorug02G0523200 Rorug02G0574700 Rorug02G0574700
rosa_samantha	Rh2AG589300 Rh2AG654100 Rh2AG654200 Rh2AG654300 Rh2BG601500 Rh2BG665300 Rh2BG665400 Rh2BG665500 Rh2CG572000 Rh2CG629600 Rh2CG629700 Rh2DG611900 Rh2DG612000 Rh2DG680000 Rh2DG680100
rosa_wichuraiana	Rw2G053700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	180, 604
AccBSI	CCGCTC	1 cut(s)	325
AciI	CCGC	1 cut(s)	325
AclWI	GGATC	1 cut(s)	443
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	4 cut(s)	154, 192, 340, 619
AgsI	TTSAA	3 cut(s)	104, 278, 304
Alw21I	GWGCWC	2 cut(s)	14, 29
AlwI	GGATC	1 cut(s)	443
AlwNI	CAGNNNCTG	2 cut(s)	135, 259
Ama87I	CYCGRG	1 cut(s)	361
AoxI	GGCC	2 cut(s)	342, 557
ApeKI	GCWGC	6 cut(s)	158, 196, 290, 513, 626, 764
AsuHPI	GGTGA	2 cut(s)	17, 332
AvaI	CYCGRG	1 cut(s)	361
BaeGI	GKGCMC	1 cut(s)	185
BanI	GGYRCC	2 cut(s)	180, 604
BanII	GRGCYC	1 cut(s)	14
Bbv12I	GWGCWC	2 cut(s)	14, 29
BbvI	GCAGC	6 cut(s)	145, 208, 302, 525, 613, 751
BclI	TGATCA	1 cut(s)	688
BfaI	CTAG	4 cut(s)	461, 509, 717, 744
BglII	AGATCT	1 cut(s)	215
BisI	GCNGC	6 cut(s)	159, 197, 291, 514, 627, 765
BlsI	GCNGC	6 cut(s)	160, 198, 292, 515, 628, 766
BmeT110I	CYCGRG	1 cut(s)	361
BmiI	GGNNCC	4 cut(s)	182, 298, 606, 679
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	3 cut(s)	568, 613, 749
BmuI	ACTGGG	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	315
Bpu10I	CCTNAGC	1 cut(s)	59
BpuEI	CTTGAG	2 cut(s)	13, 252
BsaBI	GATNNNNATC	1 cut(s)	582
BsaJI	CCNNGG	2 cut(s)	735, 757
Bsc4I	CCNNNNNNNGG	4 cut(s)	154, 192, 340, 619
Bse1I	ACTGG	2 cut(s)	108, 527
Bse3DI	GCAATG	1 cut(s)	214
Bse8I	GATNNNNATC	1 cut(s)	582
BseDI	CCNNGG	2 cut(s)	735, 757
BseGI	GGATG	2 cut(s)	70, 628
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	4 cut(s)	154, 192, 340, 619
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	3 cut(s)	73, 629, 719
BseNI	ACTGG	2 cut(s)	108, 527
BseRI	GAGGAG	1 cut(s)	668
BseSI	GKGCMC	1 cut(s)	185
BseXI	GCAGC	6 cut(s)	145, 208, 302, 525, 613, 751
BsgI	GTGCAG	1 cut(s)	438
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	2 cut(s)	344, 559
BshNI	GGYRCC	2 cut(s)	180, 604
BsiEI	CGRYCG	1 cut(s)	155
BsiHKAI	GWGCWC	2 cut(s)	14, 29
BsiHKCI	CYCGRG	1 cut(s)	361
BslI	CCNNNNNNNGG	4 cut(s)	154, 192, 340, 619
BsnI	GGCC	2 cut(s)	344, 559
BsoBI	CYCGRG	1 cut(s)	361
Bsp1286I	GDGCHC	3 cut(s)	14, 29, 185
Bsp143I	GATC	4 cut(s)	152, 215, 448, 688
Bsp19I	CCATGG	1 cut(s)	735
BspACI	CCGC	1 cut(s)	325
BspANI	GGCC	2 cut(s)	344, 559
BspCNI	CTCAG	3 cut(s)	72, 630, 720
BspLI	GGNNCC	4 cut(s)	182, 298, 606, 679
BspPI	GGATC	1 cut(s)	443
BspT107I	GGYRCC	2 cut(s)	180, 604
BsrBI	CCGCTC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	214
BsrI	ACTGG	2 cut(s)	108, 527
BssECI	CCNNGG	2 cut(s)	735, 757
BssMI	GATC	4 cut(s)	152, 215, 448, 688
BssT1I	CCWWGG	1 cut(s)	735
Bst4CI	ACNGT	4 cut(s)	226, 235, 308, 758
Bst6I	CTCTTC	2 cut(s)	170, 373
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	3 cut(s)	59, 638, 728
BstDSI	CCRYGG	2 cut(s)	735, 757
BstF5I	GGATG	2 cut(s)	70, 628
BstKTI	GATC	4 cut(s)	155, 218, 451, 691
BstMBI	GATC	4 cut(s)	152, 215, 448, 688
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	6 cut(s)	189, 287, 296, 461, 632, 746
BstSLI	GKGCMC	1 cut(s)	185
BstV1I	GCAGC	6 cut(s)	145, 208, 302, 525, 613, 751
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BsuRI	GGCC	2 cut(s)	344, 559
BtgI	CCRYGG	2 cut(s)	735, 757
BtsCI	GGATG	2 cut(s)	70, 628
BtsI	GCAGTG	1 cut(s)	691
BtsIMutI	CAGTG	1 cut(s)	691
Cac8I	GCNNGC	1 cut(s)	194
CaiI	CAGNNNCTG	2 cut(s)	135, 259
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	3 cut(s)	49, 617, 736
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	3 cut(s)	59, 638, 728
DpnI	GATC	4 cut(s)	154, 217, 450, 690
DpnII	GATC	4 cut(s)	152, 215, 448, 688
Eam1104I	CTCTTC	2 cut(s)	170, 373
EarI	CTCTTC	2 cut(s)	170, 373
Ecl136II	GAGCTC	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	735
Eco147I	AGGCCT	2 cut(s)	344, 559
Eco24I	GRGCYC	1 cut(s)	14
Eco32I	GATATC	1 cut(s)	537
Eco53kI	GAGCTC	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	361
EcoICRI	GAGCTC	1 cut(s)	12
EcoRV	GATATC	1 cut(s)	537
EcoT14I	CCWWGG	1 cut(s)	735
EcoT38I	GRGCYC	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	735
FaeI	CATG	3 cut(s)	52, 620, 739
FaiI	YATR	8 cut(s)	50, 241, 467, 563, 618, 662, 737, 779
FatI	CATG	3 cut(s)	48, 616, 735
FauI	CCCGC	1 cut(s)	318
FbaI	TGATCA	1 cut(s)	688
Fnu4HI	GCNGC	6 cut(s)	159, 197, 291, 514, 627, 765
FokI	GGATG	2 cut(s)	77, 635
FriOI	GRGCYC	1 cut(s)	14
Fsp4HI	GCNGC	6 cut(s)	159, 197, 291, 514, 627, 765
FspBI	CTAG	4 cut(s)	461, 509, 717, 744
GluI	GCNGC	6 cut(s)	159, 197, 291, 514, 627, 765
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	2 cut(s)	344, 559
Hin1II	CATG	3 cut(s)	52, 620, 739
HinfI	GANTC	4 cut(s)	37, 250, 367, 493
HphI	GGTGA	2 cut(s)	17, 332
Hpy166II	GTNNAC	2 cut(s)	125, 229
Hpy188I	TCNGA	2 cut(s)	588, 639
Hpy188III	TCNNGA	3 cut(s)	269, 311, 744
Hpy8I	GTNNAC	2 cut(s)	125, 229
Hpy99I	CGWCG	1 cut(s)	592
HpyAV	CCTTC	4 cut(s)	158, 311, 408, 594
HpyCH4III	ACNGT	4 cut(s)	226, 235, 308, 758
HpyCH4V	TGCA	7 cut(s)	48, 192, 222, 455, 581, 629, 767
HpyF10VI	GCNNNNNNNGC	6 cut(s)	189, 287, 296, 461, 632, 746
HpyF3I	CTNAG	3 cut(s)	59, 638, 728
Hsp92II	CATG	3 cut(s)	52, 620, 739
Ksp22I	TGATCA	1 cut(s)	688
Kzo9I	GATC	4 cut(s)	152, 215, 448, 688
LmnI	GCTCC	1 cut(s)	296
Lsp1109I	GCAGC	6 cut(s)	145, 208, 302, 525, 613, 751
LweI	GCATC	3 cut(s)	568, 613, 749
MaeI	CTAG	4 cut(s)	461, 509, 717, 744
MaeIII	GTNAC	1 cut(s)	471
MalI	GATC	4 cut(s)	154, 217, 450, 690
MbiI	CCGCTC	1 cut(s)	325
MboI	GATC	4 cut(s)	152, 215, 448, 688
MboII	GAAGA	6 cut(s)	32, 187, 225, 326, 390, 423
MflI	RGATCY	1 cut(s)	215
MhlI	GDGCHC	3 cut(s)	14, 29, 185
MluCI	AATT	1 cut(s)	552
MmeI	TCCRAC	1 cut(s)	611
MslI	CAYNNNNRTG	1 cut(s)	621
MspA1I	CMGCKG	1 cut(s)	293
MwoI	GCNNNNNNNGC	6 cut(s)	189, 287, 296, 461, 632, 746
NcoI	CCATGG	1 cut(s)	735
NdeII	GATC	4 cut(s)	152, 215, 448, 688
NlaIII	CATG	3 cut(s)	52, 620, 739
NlaIV	GGNNCC	4 cut(s)	182, 298, 606, 679
PaeR7I	CTCGAG	1 cut(s)	361
PceI	AGGCCT	2 cut(s)	344, 559
PfeI	GAWTC	4 cut(s)	37, 250, 367, 493
PkrI	GCNGC	6 cut(s)	160, 198, 292, 515, 628, 766
Ple19I	CGATCG	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	14
PspN4I	GGNNCC	4 cut(s)	182, 298, 606, 679
PspXI	VCTCGAGB	1 cut(s)	361
PstNI	CAGNNNCTG	2 cut(s)	135, 259
PsuI	RGATCY	1 cut(s)	215
PvuI	CGATCG	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
RseI	CAYNNNNRTG	1 cut(s)	621
SacI	GAGCTC	1 cut(s)	14
SatI	GCNGC	6 cut(s)	159, 197, 291, 514, 627, 765
Sau3AI	GATC	4 cut(s)	152, 215, 448, 688
SduI	GDGCHC	3 cut(s)	14, 29, 185
SfaNI	GCATC	3 cut(s)	568, 613, 749
Sfr274I	CTCGAG	1 cut(s)	361
SlaI	CTCGAG	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	621
SmlI	CTYRAG	3 cut(s)	28, 267, 361
SmoI	CTYRAG	3 cut(s)	28, 267, 361
Sse9I	AATT	1 cut(s)	552
SseBI	AGGCCT	2 cut(s)	344, 559
SsiI	CCGC	1 cut(s)	325
SspMI	CTAG	4 cut(s)	461, 509, 717, 744
SstI	GAGCTC	1 cut(s)	14
StuI	AGGCCT	2 cut(s)	344, 559
StyI	CCWWGG	1 cut(s)	735
TaaI	ACNGT	4 cut(s)	226, 235, 308, 758
TaqI	TCGA	5 cut(s)	35, 151, 362, 502, 523
TasI	AATT	1 cut(s)	552
TatI	WGTACW	1 cut(s)	110
TfiI	GAWTC	4 cut(s)	37, 250, 367, 493
TscAI	CASTG	1 cut(s)	691
TseI	GCWGC	6 cut(s)	158, 196, 290, 513, 626, 764
TspRI	CASTG	1 cut(s)	691
XbaI	TCTAGA	1 cut(s)	743
XhoI	CTCGAG	1 cut(s)	361
XspI	CTAG	4 cut(s)	461, 509, 717, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.