Rh2BG665300

Glycosyl transferase family 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001421
Physical Location & Seq
Forward (+)
87847769 .. 87848017
249 bp
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UTR
Exon/CDS
Intron
Rh2BG665300.1

Sequence Viewer

Length: 249 bp
ATGGTGAGGAACCAGGGTCGGTTCTTGAAGGAATGGGTCATATACCATGCTGAAATGGGAGTGCAACGTTGGTTTATTTACGACAACAATAGTGATGATGAAACTGATGTCGTTATTGAGCTTCTACAGAGTGGGAGCTACAACATTACCCGGCACCTCTGGCCTTGGATCAAGACCCAGGAGGCTGGGTTCGCGCATTGCGCGTTAATTACGGGCACGCAAGACTGGCCAGTGGGTTGGGTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92 zf-C3HC4

Protein Analysis

82

Amino Acids

9.73

Weight (kDa)

5.1

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_tranf_2_4 PF13704 3 - 44 2.7e-07 Glycosyl transferase family 2
Glyco_transf_92 PF01697 9 - 69 2.8e-10 Glycosyltransferase family 92
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 153
AccII CGCG 2 cut(s) 194, 203
AclI AACGTT 1 cut(s) 67
AclWI GGATC 1 cut(s) 176
AcoI YGGCCR 1 cut(s) 227
AgsI TTSAA 1 cut(s) 28
AjnI CCWGG 2 cut(s) 12, 177
AloI GAACNNNNNNTCC 2 cut(s) 173, 205
AluBI AGCT 2 cut(s) 121, 138
AluI AGCT 2 cut(s) 121, 138
AlwI GGATC 1 cut(s) 176
AoxI GGCC 2 cut(s) 161, 227
AspLEI GCGC 2 cut(s) 196, 203
AsuC2I CCSGG 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 218
BalI TGGCCA 1 cut(s) 229
BanI GGYRCC 1 cut(s) 153
BciT130I CCWGG 2 cut(s) 14, 179
BcnI CCSGG 1 cut(s) 151
BfmI CTRYAG 1 cut(s) 125
Bme1390I CCNGG 3 cut(s) 14, 151, 179
BmiI GGNNCC 2 cut(s) 11, 155
BmrFI CCNGG 3 cut(s) 14, 151, 179
BpuMI CCSGG 1 cut(s) 151
BsaJI CCNNGG 3 cut(s) 13, 164, 177
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bse1I ACTGG 2 cut(s) 230, 230
Bse3DI GCAATG 1 cut(s) 196
BseBI CCWGG 2 cut(s) 14, 179
BseDI CCNNGG 3 cut(s) 13, 164, 177
BseMI GCAATG 1 cut(s) 196
BseNI ACTGG 2 cut(s) 230, 230
BseSI GKGCMC 1 cut(s) 218
BseYI CCCAGC 1 cut(s) 185
Bsh1236I CGCG 2 cut(s) 194, 203
BshFI GGCC 2 cut(s) 163, 229
BshNI GGYRCC 1 cut(s) 153
BsiSI CCGG 1 cut(s) 151
BsnI GGCC 2 cut(s) 163, 229
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 1 cut(s) 168
BspANI GGCC 2 cut(s) 163, 229
BspFNI CGCG 2 cut(s) 194, 203
BspLI GGNNCC 2 cut(s) 11, 155
BspPI GGATC 1 cut(s) 176
BspT107I GGYRCC 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 196
BsrI ACTGG 2 cut(s) 230, 230
BssECI CCNNGG 3 cut(s) 13, 164, 177
BssMI GATC 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 164
Bst2UI CCWGG 2 cut(s) 14, 179
BstC8I GCNNGC 1 cut(s) 218
BstFNI CGCG 2 cut(s) 194, 203
BstHHI GCGC 2 cut(s) 196, 203
BstKTI GATC 1 cut(s) 171
BstMBI GATC 1 cut(s) 168
BstMWI GCNNNNNNNGC 4 cut(s) 160, 191, 200, 226
BstNI CCWGG 2 cut(s) 14, 179
BstSCI CCNGG 3 cut(s) 12, 149, 177
BstSFI CTRYAG 1 cut(s) 125
BstSLI GKGCMC 1 cut(s) 218
BstUI CGCG 2 cut(s) 194, 203
BstXI CCANNNNNNTGG 2 cut(s) 185, 237
BsuRI GGCC 2 cut(s) 163, 229
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 1 cut(s) 218
CfoI GCGC 2 cut(s) 196, 203
CviAII CATG 1 cut(s) 47
CviJI RGCY 5 cut(s) 121, 138, 163, 185, 229
CviKI_1 RGCY 5 cut(s) 121, 138, 163, 185, 229
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
EaeI YGGCCR 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 164
EcoRII CCWGG 2 cut(s) 12, 177
EcoT14I CCWWGG 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 1 cut(s) 50
FaiI YATR 3 cut(s) 41, 43, 48
FatI CATG 1 cut(s) 46
GlaI GCGC 2 cut(s) 195, 202
GsaI CCCAGC 1 cut(s) 189
HaeIII GGCC 2 cut(s) 163, 229
HapII CCGG 1 cut(s) 151
HhaI GCGC 2 cut(s) 196, 203
Hin1II CATG 1 cut(s) 50
Hin6I GCGC 2 cut(s) 194, 201
HinP1I GCGC 2 cut(s) 194, 201
HpaII CCGG 1 cut(s) 151
HphI GGTGA 1 cut(s) 16
Hpy188III TCNNGA 2 cut(s) 25, 172
HpyAV CCTTC 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 64
HpyF10VI GCNNNNNNNGC 4 cut(s) 160, 191, 200, 226
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 1 cut(s) 50
HspAI GCGC 2 cut(s) 194, 201
Kzo9I GATC 1 cut(s) 168
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 8 cut(s) 26, 145, 164, 164, 171, 191, 211, 243
MaeII ACGT 1 cut(s) 67
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MhlI GDGCHC 1 cut(s) 218
MlsI TGGCCA 1 cut(s) 229
MluCI AATT 1 cut(s) 207
MluNI TGGCCA 1 cut(s) 229
MnlI CCTC 2 cut(s) 167, 175
Mox20I TGGCCA 1 cut(s) 229
MscI TGGCCA 1 cut(s) 229
MseI TTAA 1 cut(s) 206
Msp20I TGGCCA 1 cut(s) 229
MspI CCGG 1 cut(s) 151
MspR9I CCNGG 3 cut(s) 14, 151, 179
MvaI CCWGG 2 cut(s) 14, 179
MvnI CGCG 2 cut(s) 194, 203
MwoI GCNNNNNNNGC 4 cut(s) 160, 191, 200, 226
NciI CCSGG 1 cut(s) 151
NdeII GATC 1 cut(s) 168
NlaIII CATG 1 cut(s) 50
NlaIV GGNNCC 2 cut(s) 11, 155
Psp1406I AACGTT 1 cut(s) 67
Psp6I CCWGG 2 cut(s) 12, 177
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 2 cut(s) 12, 177
PspN4I GGNNCC 2 cut(s) 11, 155
SaqAI TTAA 1 cut(s) 206
Sau3AI GATC 1 cut(s) 168
ScrFI CCNGG 3 cut(s) 14, 151, 179
SduI GDGCHC 1 cut(s) 218
SetI ASST 4 cut(s) 70, 123, 140, 159
SfcI CTRYAG 1 cut(s) 125
Sse9I AATT 1 cut(s) 207
StyD4I CCNGG 3 cut(s) 12, 149, 177
StyI CCWWGG 1 cut(s) 164
TaiI ACGT 1 cut(s) 70
TasI AATT 1 cut(s) 207
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TscAI CASTG 1 cut(s) 237
TspDTI ATGAA 1 cut(s) 114
TspRI CASTG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.