Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001421

Physical Location & Seq

Genomic Coordinates Reverse (-)

84404806 .. 84405402

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG612000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGTTATGACTTTCTCCGATCCAGAACTCCCGACAATGGTGAGAGAAGAAGAACCAAAACAGAGCCCAAAAACTCAACCAAGAGAATCGAACCCAGTTGAGATCGGAAGTGGCCCAAGTGGGAACAGCTTGATGTTCAGTCCCATATTCAAATCGACGGCGGCCATGGCTGGTTGGGATGAAGAGTCTCCCCTGATCGCAAGCCTTGTTGTCGACGACACGCCGGAGCAAGATATAAAGCAGAAGAAACGATCTGTTTTCAGGTCCAAGACTCCACACACCAATTCATCGAGAAGAAAGCGGAGAGTTGAGCAAAAGAGCCCGGTTTCGATCCCAGTAGCTGTTCTTGACCTTGATAATGAAGAAACTACAAAAGAGGAGAGTGTGAAAGAGAAGGTAGAGCCTGAAATTGTTGTTGTGAATGACGAAAAGAATATAGGAGAAGATGAGAAGATGGGTGAGAGCTCTGGTGCTTCGTGCTCAAGCTCGAATCTTCCTTGCATGGATAAGCTTAGGGATGAGCTTTCTTGTGCTATCTGCTTGGAGATCTGCTTTGAACCCGGCCAGTACCACTCCTTGTGGACACAGTTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2

Protein Analysis

198

Amino Acids

22.09

Weight (kDa)

4.8

Isoelectric Point (pI)

76.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27330 AT5G40720 AT5G40720 AT5G40720
fragaria_vesca	FvH4_6g52450 FvH4_6g52460 FvH4_6g52470 FvH4_6g52470
malus_domestica	MD09G1017800.v1.1 MD09G1017900.v1.1 MD17G1018600.v1.1
prunus_persica	Prupe.3G299100_v2.0.a1
pyrus_communis	pycom111g01480 pycom111g01490 pycom17g01530
rosa_chinensis	RchiOBHm_Chr2g0174091 RchiOBHm_Chr2g0174101 RchiOBHm_Chr2g0174111
rosa_laevigata	RLG00000021621 RLG00000022246 RLG00000022247
rosa_multiflora	Rmu_co8270263.1_g000001 Rmu_co8399791.1_g000001 Rmu_sc0003016.1_g000002 Rmu_sc0003016.1_g000003 Rmu_sc0003188.1_g000035 Rmu_sc0003188.1_g000036 Rmu_sc0012378.1_g000002 Rmu_sc0023199.1_g000001 Rmu_sc0023199.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078450 Rroxscaffold_2G00078460 Rroxscaffold_2G00084880
rosa_rugosa	Rorug02G0523200 Rorug02G0574700 Rorug02G0574700
rosa_samantha	Rh2AG589300 Rh2AG654100 Rh2AG654200 Rh2AG654300 Rh2BG601500 Rh2BG665300 Rh2BG665400 Rh2BG665500 Rh2CG572000 Rh2CG629600 Rh2CG629700 Rh2DG611900 Rh2DG612000 Rh2DG680000 Rh2DG680100
rosa_wichuraiana	Rw2G053700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	2 cut(s)	161, 301
AclWI	GGATC	2 cut(s)	14, 325
AcoI	YGGCCR	2 cut(s)	162, 562
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	151, 557
AluBI	AGCT	6 cut(s)	129, 341, 465, 486, 511, 523
AluI	AGCT	6 cut(s)	129, 341, 465, 486, 511, 523
Alw21I	GWGCWC	2 cut(s)	467, 482
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	2 cut(s)	14, 325
AlwNI	CAGNNNCTG	2 cut(s)	341, 592
AoxI	GGCC	3 cut(s)	112, 162, 562
AspS9I	GGNCC	2 cut(s)	113, 264
AsuC2I	CCSGG	2 cut(s)	323, 561
AsuHPI	GGTGA	2 cut(s)	52, 470
AvaII	GGWCC	1 cut(s)	264
BanII	GRGCYC	3 cut(s)	68, 323, 467
Bbv12I	GWGCWC	2 cut(s)	467, 482
BccI	CCATC	1 cut(s)	448
BceAI	ACGGC	1 cut(s)	174
BcnI	CCSGG	2 cut(s)	323, 561
BcoDI	GTCTC	1 cut(s)	192
BglII	AGATCT	1 cut(s)	546
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	2 cut(s)	323, 561
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	2 cut(s)	113, 264
BmrFI	CCNGG	2 cut(s)	323, 561
BmrI	ACTGGG	2 cut(s)	89, 329
BmuI	ACTGGG	2 cut(s)	89, 329
Bpu10I	CCTNAGC	1 cut(s)	512
BpuEI	CTTGAG	1 cut(s)	466
BpuMI	CCSGG	2 cut(s)	323, 561
BsaJI	CCNNGG	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	3 cut(s)	95, 335, 565
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	2 cut(s)	184, 523
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseNI	ACTGG	3 cut(s)	95, 335, 565
BseRI	GAGGAG	1 cut(s)	392
BshFI	GGCC	3 cut(s)	114, 164, 564
BsiHKAI	GWGCWC	2 cut(s)	467, 482
BsiSI	CCGG	3 cut(s)	224, 323, 561
BslFI	GGGAC	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	126
BsnI	GGCC	3 cut(s)	114, 164, 564
Bsp1286I	GDGCHC	4 cut(s)	68, 323, 467, 482
Bsp143I	GATC	6 cut(s)	19, 102, 195, 251, 330, 546
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	2 cut(s)	161, 301
BspANI	GGCC	3 cut(s)	114, 164, 564
BspPI	GGATC	2 cut(s)	14, 325
BsrI	ACTGG	3 cut(s)	95, 335, 565
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	6 cut(s)	19, 102, 195, 251, 330, 546
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	588
Bst6I	CTCTTC	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	512
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	2 cut(s)	184, 523
BstKTI	GATC	6 cut(s)	22, 105, 198, 254, 333, 549
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	6 cut(s)	19, 102, 195, 251, 330, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstSCI	CCNGG	2 cut(s)	321, 559
BstX2I	RGATCY	1 cut(s)	546
BstYI	RGATCY	1 cut(s)	546
BsuRI	GGCC	3 cut(s)	114, 164, 564
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	184, 523
Cac8I	GCNNGC	1 cut(s)	202
CaiI	CAGNNNCTG	2 cut(s)	341, 592
Cfr13I	GGNCC	2 cut(s)	113, 264
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	2 cut(s)	166, 502
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	1 cut(s)	512
DpnI	GATC	6 cut(s)	21, 104, 197, 253, 332, 548
DpnII	GATC	6 cut(s)	19, 102, 195, 251, 330, 546
EaeI	YGGCCR	2 cut(s)	162, 562
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Ecl136II	GAGCTC	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	3 cut(s)	68, 323, 467
Eco47I	GGWCC	1 cut(s)	264
Eco53kI	GAGCTC	1 cut(s)	465
EcoICRI	GAGCTC	1 cut(s)	465
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	3 cut(s)	68, 323, 467
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	169, 505
FaiI	YATR	6 cut(s)	8, 146, 167, 236, 437, 503
FaqI	GGGAC	1 cut(s)	126
FatI	CATG	2 cut(s)	165, 501
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	2 cut(s)	191, 530
FriOI	GRGCYC	3 cut(s)	68, 323, 467
Fsp4HI	GCNGC	1 cut(s)	162
GluI	GCNGC	1 cut(s)	162
HaeIII	GGCC	3 cut(s)	114, 164, 564
HapII	CCGG	3 cut(s)	224, 323, 561
Hin1II	CATG	2 cut(s)	169, 505
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	4 cut(s)	86, 185, 271, 490
HpaII	CCGG	3 cut(s)	224, 323, 561
HphI	GGTGA	2 cut(s)	52, 470
Hpy166II	GTNNAC	2 cut(s)	214, 582
Hpy188I	TCNGA	2 cut(s)	19, 107
Hpy188III	TCNNGA	4 cut(s)	23, 31, 291, 347
Hpy8I	GTNNAC	2 cut(s)	214, 582
Hpy99I	CGWCG	2 cut(s)	160, 218
HpyAV	CCTTC	1 cut(s)	388
HpyCH4III	ACNGT	1 cut(s)	588
HpyCH4V	TGCA	1 cut(s)	501
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	512
Hsp92II	CATG	2 cut(s)	169, 505
Kzo9I	GATC	6 cut(s)	19, 102, 195, 251, 330, 546
LmnI	GCTCC	1 cut(s)	226
MalI	GATC	6 cut(s)	21, 104, 197, 253, 332, 548
MboI	GATC	6 cut(s)	19, 102, 195, 251, 330, 546
MboII	GAAGA	9 cut(s)	59, 62, 194, 256, 306, 374, 455, 463, 485
MflI	RGATCY	1 cut(s)	546
MhlI	GDGCHC	4 cut(s)	68, 323, 467, 482
MluCI	AATT	2 cut(s)	283, 408
MlyI	GAGTC	2 cut(s)	194, 265
MnlI	CCTC	1 cut(s)	370
MspI	CCGG	3 cut(s)	224, 323, 561
MspR9I	CCNGG	2 cut(s)	323, 561
MwoI	GCNNNNNNNGC	1 cut(s)	167
NciI	CCSGG	2 cut(s)	323, 561
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	6 cut(s)	19, 102, 195, 251, 330, 546
NlaIII	CATG	2 cut(s)	169, 505
PfeI	GAWTC	2 cut(s)	86, 490
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	2 cut(s)	193, 265
PpsI	GAGTC	2 cut(s)	193, 265
Psp124BI	GAGCTC	1 cut(s)	467
PspPI	GGNCC	2 cut(s)	113, 264
PstNI	CAGNNNCTG	2 cut(s)	341, 592
PsuI	RGATCY	1 cut(s)	546
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
SacI	GAGCTC	1 cut(s)	467
SalI	GTCGAC	1 cut(s)	212
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	6 cut(s)	19, 102, 195, 251, 330, 546
Sau96I	GGNCC	2 cut(s)	113, 264
SchI	GAGTC	2 cut(s)	194, 265
ScrFI	CCNGG	2 cut(s)	323, 561
SduI	GDGCHC	4 cut(s)	68, 323, 467, 482
SetI	ASST	9 cut(s)	131, 266, 343, 354, 399, 467, 488, 513, 525
SinI	GGWCC	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	481
SmoI	CTYRAG	1 cut(s)	481
Sse9I	AATT	2 cut(s)	283, 408
SsiI	CCGC	2 cut(s)	161, 301
SstI	GAGCTC	1 cut(s)	467
StyD4I	CCNGG	2 cut(s)	321, 559
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	588
TaqI	TCGA	6 cut(s)	89, 155, 213, 290, 329, 488
TasI	AATT	2 cut(s)	283, 408
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	86, 490
TspDTI	ATGAA	3 cut(s)	195, 276, 375
VpaK11BI	GGWCC	1 cut(s)	264
XmiI	GTMKAC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.