Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001421

Physical Location & Seq

Genomic Coordinates Reverse (-)

76783852 .. 76784747

Gene Structure 896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021621

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCTGGTTGGGATGGAGAGTCTCTCCTGATCGCAAGCCTTGTCGTCGACGACACGCCGGAGCAAGATATAAAGCAGAAGAAACGATCTGTTTTCAGGTCCAAGACTCCACACACCAATTCATCGAGAAGAAAGCGGAGAGTTGAGCAAAAGAGCCCGGTTTCGATCCCAGTAGCTGTTCTTGACCTTGATAATGAAGAAACTACAAAAGAGGAGAGTGTGAAAGAGAAGGTAGAGCCTGAAATTGTTGTTGTGAATGAAGAAAAGAATATAGGAGAAGATGAGAAGATGGGTGAGAGCTCTGGTGCTTCGTGCTCAAGCTCGAATCTTCCTTGCATGGATAAGCTTAGGGATGAGCTTTCTTGTGCTATCTGCTTGGAGATCTGCTTTGAACCCGGCCAGTACCACTCCTTGTGGACACAGTTTCTTCGTGAAGAAGGTGAGCGGGAAATCCCCGATAAGGCCTTTACTAGTAGCAACTCGAGGAATCAAAGCAGAAGAGTATCTGGCAGTGATGTGGCTGTAAGGAGAAGAAGGGTAGTATTAAGCCAAGATGATGATGAGGACGAGCCTGCACCACTAGCTATAAGGTTACAGATGAGAGAAGCTGAGAATCAAAATCGAGAACTAGGCAGCTTGGCTCGACCTGTAAGGATATCATCAGGCATAGAAATTAGGCATATAAAGGGTATCAAGCAGAGATGCAAGTCCGACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_92 zf-C3HC4

Protein Analysis

240

Amino Acids

27.04

Weight (kDa)

5.42

Isoelectric Point (pI)

77.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27330 AT5G40720 AT5G40720 AT5G40720
fragaria_vesca	FvH4_6g52450 FvH4_6g52460 FvH4_6g52470 FvH4_6g52470
malus_domestica	MD09G1017800.v1.1 MD09G1017900.v1.1 MD17G1018600.v1.1
prunus_persica	Prupe.3G299100_v2.0.a1
pyrus_communis	pycom111g01480 pycom111g01490 pycom17g01530
rosa_chinensis	RchiOBHm_Chr2g0174091 RchiOBHm_Chr2g0174101 RchiOBHm_Chr2g0174111
rosa_laevigata	RLG00000021621 RLG00000022246 RLG00000022247
rosa_multiflora	Rmu_co8270263.1_g000001 Rmu_co8399791.1_g000001 Rmu_sc0003016.1_g000002 Rmu_sc0003016.1_g000003 Rmu_sc0003188.1_g000035 Rmu_sc0003188.1_g000036 Rmu_sc0012378.1_g000002 Rmu_sc0023199.1_g000001 Rmu_sc0023199.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078450 Rroxscaffold_2G00078460 Rroxscaffold_2G00084880
rosa_rugosa	Rorug02G0523200 Rorug02G0574700 Rorug02G0574700
rosa_samantha	Rh2AG589300 Rh2AG654100 Rh2AG654200 Rh2AG654300 Rh2BG601500 Rh2BG665300 Rh2BG665400 Rh2BG665500 Rh2CG572000 Rh2CG629600 Rh2CG629700 Rh2DG611900 Rh2DG612000 Rh2DG680000 Rh2DG680100
rosa_wichuraiana	Rw2G053700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	445
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	2 cut(s)	136, 445
AclWI	GGATC	1 cut(s)	160
AcoI	YGGCCR	1 cut(s)	397
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	1 cut(s)	460
AgsI	TTSAA	1 cut(s)	392
AhlI	ACTAGT	1 cut(s)	470
AluBI	AGCT	8 cut(s)	176, 300, 321, 346, 358, 584, 608, 636
AluI	AGCT	8 cut(s)	176, 300, 321, 346, 358, 584, 608, 636
Alw21I	GWGCWC	2 cut(s)	302, 317
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	160
AlwNI	CAGNNNCTG	1 cut(s)	176
Ama87I	CYCGRG	1 cut(s)	481
AoxI	GGCC	2 cut(s)	397, 462
ApeKI	GCWGC	1 cut(s)	633
AspS9I	GGNCC	1 cut(s)	99
AsuC2I	CCSGG	2 cut(s)	158, 396
AsuHPI	GGTGA	2 cut(s)	305, 452
AvaI	CYCGRG	1 cut(s)	481
AvaII	GGWCC	1 cut(s)	99
BanII	GRGCYC	2 cut(s)	158, 302
Bbv12I	GWGCWC	2 cut(s)	302, 317
BbvI	GCAGC	1 cut(s)	645
BccI	CCATC	2 cut(s)	8, 283
BcnI	CCSGG	2 cut(s)	158, 396
BcoDI	GTCTC	1 cut(s)	27
BcuI	ACTAGT	1 cut(s)	470
BfaI	CTAG	3 cut(s)	471, 581, 629
BglII	AGATCT	1 cut(s)	381
BisI	GCNGC	1 cut(s)	634
BlsI	GCNGC	1 cut(s)	635
Bme1390I	CCNGG	2 cut(s)	158, 396
Bme18I	GGWCC	1 cut(s)	99
BmeT110I	CYCGRG	1 cut(s)	481
BmgT120I	GGNCC	1 cut(s)	99
BmrFI	CCNGG	2 cut(s)	158, 396
BmrI	ACTGGG	1 cut(s)	164
BmsI	GCATC	1 cut(s)	692
BmuI	ACTGGG	1 cut(s)	164
BplI	GAGNNNNNCTC	2 cut(s)	9, 41
Bpu10I	CCTNAGC	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	301
BpuMI	CCSGG	2 cut(s)	158, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	460
Bse1I	ACTGG	2 cut(s)	170, 400
BseGI	GGATG	2 cut(s)	19, 358
BseLI	CCNNNNNNNGG	1 cut(s)	460
BseMII	CTCAG	1 cut(s)	600
BseNI	ACTGG	2 cut(s)	170, 400
BseRI	GAGGAG	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	645
BsgI	GTGCAG	1 cut(s)	558
BshFI	GGCC	2 cut(s)	399, 464
BsiHKAI	GWGCWC	2 cut(s)	302, 317
BsiHKCI	CYCGRG	1 cut(s)	481
BsiSI	CCGG	3 cut(s)	59, 158, 396
BslI	CCNNNNNNNGG	1 cut(s)	460
BsmAI	GTCTC	1 cut(s)	27
BsnI	GGCC	2 cut(s)	399, 464
BsoBI	CYCGRG	1 cut(s)	481
Bsp1286I	GDGCHC	3 cut(s)	158, 302, 317
Bsp143I	GATC	4 cut(s)	30, 86, 165, 381
BspACI	CCGC	2 cut(s)	136, 445
BspANI	GGCC	2 cut(s)	399, 464
BspCNI	CTCAG	1 cut(s)	601
BspPI	GGATC	1 cut(s)	160
BsrBI	CCGCTC	1 cut(s)	445
BsrI	ACTGG	2 cut(s)	170, 400
BssMI	GATC	4 cut(s)	30, 86, 165, 381
Bst4CI	ACNGT	1 cut(s)	423
Bst6I	CTCTTC	1 cut(s)	493
BstC8I	GCNNGC	2 cut(s)	37, 573
BstDEI	CTNAG	2 cut(s)	347, 609
BstF5I	GGATG	2 cut(s)	19, 358
BstKTI	GATC	4 cut(s)	33, 89, 168, 384
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	4 cut(s)	30, 86, 165, 381
BstMWI	GCNNNNNNNGC	1 cut(s)	581
BstSCI	CCNGG	2 cut(s)	156, 394
BstV1I	GCAGC	1 cut(s)	645
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	399, 464
BtsCI	GGATG	2 cut(s)	19, 358
BtsI	GCAGTG	1 cut(s)	517
BtsIMutI	CAGTG	1 cut(s)	517
Cac8I	GCNNGC	2 cut(s)	37, 573
CaiI	CAGNNNCTG	1 cut(s)	176
Cfr13I	GGNCC	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	1 cut(s)	337
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	2 cut(s)	347, 609
DpnI	GATC	4 cut(s)	32, 88, 167, 383
DpnII	GATC	4 cut(s)	30, 86, 165, 381
EaeI	YGGCCR	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	493
EarI	CTCTTC	1 cut(s)	493
Ecl136II	GAGCTC	1 cut(s)	300
Eco147I	AGGCCT	1 cut(s)	464
Eco24I	GRGCYC	2 cut(s)	158, 302
Eco32I	GATATC	1 cut(s)	657
Eco47I	GGWCC	1 cut(s)	99
Eco53kI	GAGCTC	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	481
EcoICRI	GAGCTC	1 cut(s)	300
EcoRV	GATATC	1 cut(s)	657
EcoT38I	GRGCYC	2 cut(s)	158, 302
FaeI	CATG	1 cut(s)	340
FaiI	YATR	7 cut(s)	71, 272, 338, 587, 668, 681, 683
FatI	CATG	1 cut(s)	336
FauI	CCCGC	1 cut(s)	438
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	634
FokI	GGATG	2 cut(s)	26, 365
FriOI	GRGCYC	2 cut(s)	158, 302
Fsp4HI	GCNGC	1 cut(s)	634
FspBI	CTAG	3 cut(s)	471, 581, 629
GluI	GCNGC	1 cut(s)	634
HaeIII	GGCC	2 cut(s)	399, 464
HapII	CCGG	3 cut(s)	59, 158, 396
Hin1II	CATG	1 cut(s)	340
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	5 cut(s)	20, 106, 325, 487, 613
HpaII	CCGG	3 cut(s)	59, 158, 396
HphI	GGTGA	2 cut(s)	305, 452
Hpy166II	GTNNAC	2 cut(s)	49, 417
Hpy188I	TCNGA	1 cut(s)	712
Hpy188III	TCNNGA	5 cut(s)	28, 126, 182, 431, 623
Hpy8I	GTNNAC	2 cut(s)	49, 417
Hpy99I	CGWCG	3 cut(s)	50, 53, 716
HpyAV	CCTTC	3 cut(s)	223, 431, 528
HpyCH4III	ACNGT	1 cut(s)	423
HpyCH4V	TGCA	3 cut(s)	336, 575, 705
HpyF10VI	GCNNNNNNNGC	1 cut(s)	581
HpyF3I	CTNAG	2 cut(s)	347, 609
Hsp92II	CATG	1 cut(s)	340
Kzo9I	GATC	4 cut(s)	30, 86, 165, 381
LmnI	GCTCC	1 cut(s)	61
Lsp1109I	GCAGC	1 cut(s)	645
LweI	GCATC	1 cut(s)	692
MaeI	CTAG	3 cut(s)	471, 581, 629
MaeIII	GTNAC	1 cut(s)	591
MalI	GATC	4 cut(s)	32, 88, 167, 383
MbiI	CCGCTC	1 cut(s)	445
MboI	GATC	4 cut(s)	30, 86, 165, 381
MflI	RGATCY	1 cut(s)	381
MhlI	GDGCHC	3 cut(s)	158, 302, 317
MluCI	AATT	3 cut(s)	118, 243, 672
MlyI	GAGTC	2 cut(s)	29, 100
MnlI	CCTC	3 cut(s)	205, 477, 556
MseI	TTAA	1 cut(s)	545
MspI	CCGG	3 cut(s)	59, 158, 396
MspR9I	CCNGG	2 cut(s)	158, 396
MwoI	GCNNNNNNNGC	1 cut(s)	581
NciI	CCSGG	2 cut(s)	158, 396
NdeII	GATC	4 cut(s)	30, 86, 165, 381
NlaIII	CATG	1 cut(s)	340
PaeR7I	CTCGAG	1 cut(s)	481
PceI	AGGCCT	1 cut(s)	464
PfeI	GAWTC	3 cut(s)	325, 487, 613
PkrI	GCNGC	1 cut(s)	635
PleI	GAGTC	2 cut(s)	28, 100
PpsI	GAGTC	2 cut(s)	28, 100
Psp124BI	GAGCTC	1 cut(s)	302
PspPI	GGNCC	1 cut(s)	99
PspXI	VCTCGAGB	1 cut(s)	481
PstNI	CAGNNNCTG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	381
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SacI	GAGCTC	1 cut(s)	302
SalI	GTCGAC	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	545
SatI	GCNGC	1 cut(s)	634
Sau3AI	GATC	4 cut(s)	30, 86, 165, 381
Sau96I	GGNCC	1 cut(s)	99
SchI	GAGTC	2 cut(s)	29, 100
ScrFI	CCNGG	2 cut(s)	158, 396
SduI	GDGCHC	3 cut(s)	158, 302, 317
SfaNI	GCATC	1 cut(s)	692
Sfr274I	CTCGAG	1 cut(s)	481
SgrDI	CGTCGACG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	99
SlaI	CTCGAG	1 cut(s)	481
SmlI	CTYRAG	2 cut(s)	316, 481
SmoI	CTYRAG	2 cut(s)	316, 481
SpeI	ACTAGT	1 cut(s)	470
Sse9I	AATT	3 cut(s)	118, 243, 672
SseBI	AGGCCT	1 cut(s)	464
SsiI	CCGC	2 cut(s)	136, 445
SspMI	CTAG	3 cut(s)	471, 581, 629
SstI	GAGCTC	1 cut(s)	302
StuI	AGGCCT	1 cut(s)	464
StyD4I	CCNGG	2 cut(s)	156, 394
TaaI	ACNGT	1 cut(s)	423
TaqI	TCGA	7 cut(s)	48, 125, 164, 323, 482, 622, 643
TasI	AATT	3 cut(s)	118, 243, 672
TfiI	GAWTC	3 cut(s)	325, 487, 613
Tru1I	TTAA	1 cut(s)	545
Tru9I	TTAA	1 cut(s)	545
TscAI	CASTG	1 cut(s)	517
TseI	GCWGC	1 cut(s)	633
TspDTI	ATGAA	3 cut(s)	111, 210, 273
TspRI	CASTG	1 cut(s)	517
VpaK11BI	GGWCC	1 cut(s)	99
XhoI	CTCGAG	1 cut(s)	481
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	3 cut(s)	471, 581, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.