Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001421

Physical Location & Seq

Genomic Coordinates Forward (+)

38626654 .. 38627489

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGTGAGGAACTTGAAGGAATGGGTGATGTACCATGCTGAAATGGGAGTGCAACGTTGGTTTATTTACGACAACAATAGTGATGATGAAACTGATGTTGTAATTGAGGTGCTTCAGAGTGGGAACTACAATATTACCCGGCACCTGTGGCCTTGGATCAAGACCCAGGAGGCGGCCGGGTTCGGCCATTGCGCGTTGCGGGCACGCAAGACATGCCAATGGGTAGGGTTTATTGATGTGGACGAGAGTGTCCCGGTCCAAGGCGTGACAGTCGGGTATACATGTCGCGTTACCGCCCCGGAGAGGCACAAGAGCATTTTGAAGCCGGAGGAGTTGGATTTGACATTGATGAATGCGGTGCACCATTTTCATCTTGGAAGTGGTTACGAGCCAGTGAATGCGGATAGGGGAGTGTTGGAGGAGCAGAACGTGGGTTCCAAGGATCGAGCACCTGGGTTGAGGACGAAGGTGGTGGAGCCACCGGATTGGGCGGAGAGGGTTTTTGCAGTGGCAGGAGGGTTATCAAAAACATGTGAAGAGAAAGGTGATGAGAAGGAGACCGAGAAGGAGAAGAAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_92 zf-C3HC4

Protein Analysis

194

Amino Acids

21.9

Weight (kDa)

5.53

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_92	PF01697	4 - 82	1.6e-19	Glycosyltransferase family 92
Glyco_tranf_2_4	PF13704	5 - 84	9.4e-09	Glycosyl transferase family 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27330 AT5G40720 AT5G40720 AT5G40720
fragaria_vesca	FvH4_6g52450 FvH4_6g52460 FvH4_6g52470 FvH4_6g52470
malus_domestica	MD09G1017800.v1.1 MD09G1017900.v1.1 MD17G1018600.v1.1
prunus_persica	Prupe.3G299100_v2.0.a1
pyrus_communis	pycom111g01480 pycom111g01490 pycom17g01530
rosa_chinensis	RchiOBHm_Chr2g0174091 RchiOBHm_Chr2g0174101 RchiOBHm_Chr2g0174111
rosa_laevigata	RLG00000021621 RLG00000022246 RLG00000022247
rosa_multiflora	Rmu_co8270263.1_g000001 Rmu_co8399791.1_g000001 Rmu_sc0003016.1_g000002 Rmu_sc0003016.1_g000003 Rmu_sc0003188.1_g000035 Rmu_sc0003188.1_g000036 Rmu_sc0012378.1_g000002 Rmu_sc0023199.1_g000001 Rmu_sc0023199.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078450 Rroxscaffold_2G00078460 Rroxscaffold_2G00084880
rosa_rugosa	Rorug02G0523200 Rorug02G0574700 Rorug02G0574700
rosa_samantha	Rh2AG589300 Rh2AG654100 Rh2AG654200 Rh2AG654300 Rh2BG601500 Rh2BG665300 Rh2BG665400 Rh2BG665500 Rh2CG572000 Rh2CG629600 Rh2CG629700 Rh2DG611900 Rh2DG612000 Rh2DG680000 Rh2DG680100
rosa_wichuraiana	Rw2G053700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	141
AccI	GTMKAC	1 cut(s)	278
AccII	CGCG	2 cut(s)	194, 288
AciI	CCGC	6 cut(s)	173, 199, 294, 356, 401, 491
AclI	AACGTT	1 cut(s)	55
AclWI	GGATC	2 cut(s)	164, 450
AcoI	YGGCCR	2 cut(s)	174, 184
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	3 cut(s)	172, 260, 303
AflIII	ACRYGT	2 cut(s)	281, 530
AgsI	TTSAA	2 cut(s)	16, 322
AjnI	CCWGG	2 cut(s)	165, 451
AloI	GAACNNNNNNTCC	2 cut(s)	419, 451
Alw21I	GWGCWC	2 cut(s)	363, 451
Alw26I	GTCTC	1 cut(s)	551
Alw44I	GTGCAC	1 cut(s)	359
AlwI	GGATC	2 cut(s)	164, 450
AoxI	GGCC	3 cut(s)	149, 174, 184
ApaLI	GTGCAC	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	256
AsuC2I	CCSGG	4 cut(s)	139, 178, 254, 299
AsuHPI	GGTGA	3 cut(s)	16, 37, 557
AvaII	GGWCC	1 cut(s)	256
BaeGI	GKGCMC	2 cut(s)	205, 363
BanI	GGYRCC	1 cut(s)	141
Bbv12I	GWGCWC	2 cut(s)	363, 451
BciT130I	CCWGG	2 cut(s)	167, 453
BcnI	CCSGG	4 cut(s)	139, 178, 254, 299
BcoDI	GTCTC	1 cut(s)	551
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
Bme1390I	CCNGG	6 cut(s)	139, 167, 178, 254, 299, 453
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	3 cut(s)	143, 436, 477
BmrFI	CCNGG	6 cut(s)	139, 167, 178, 254, 299, 453
BpuMI	CCSGG	4 cut(s)	139, 178, 254, 299
BsaI	GGTCTC	1 cut(s)	551
BsaJI	CCNNGG	6 cut(s)	152, 165, 259, 297, 438, 452
BsaWI	WCCGGW	1 cut(s)	481
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 260, 303
Bse1I	ACTGG	1 cut(s)	392
Bse3DI	GCAATG	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	167, 453
BseDI	CCNNGG	6 cut(s)	152, 165, 259, 297, 438, 452
BseLI	CCNNNNNNNGG	3 cut(s)	172, 260, 303
BseMI	GCAATG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	392
BseRI	GAGGAG	2 cut(s)	344, 434
BseSI	GKGCMC	2 cut(s)	205, 363
BseX3I	CGGCCG	1 cut(s)	174
Bsh1236I	CGCG	2 cut(s)	194, 288
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	3 cut(s)	151, 176, 186
BshNI	GGYRCC	1 cut(s)	141
BsiEI	CGRYCG	1 cut(s)	177
BsiHKAI	GWGCWC	2 cut(s)	363, 451
BsiSI	CCGG	6 cut(s)	139, 177, 254, 299, 326, 482
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	3 cut(s)	172, 260, 303
BsmAI	GTCTC	1 cut(s)	551
BsmFI	GGGAC	1 cut(s)	236
BsmI	GAATGC	2 cut(s)	358, 403
BsnI	GGCC	3 cut(s)	151, 176, 186
Bso31I	GGTCTC	1 cut(s)	551
Bsp1286I	GDGCHC	3 cut(s)	205, 363, 451
Bsp143I	GATC	2 cut(s)	156, 442
BspACI	CCGC	6 cut(s)	173, 199, 294, 356, 401, 491
BspANI	GGCC	3 cut(s)	151, 176, 186
BspFNI	CGCG	2 cut(s)	194, 288
BspLI	GGNNCC	3 cut(s)	143, 436, 477
BspPI	GGATC	2 cut(s)	164, 450
BspT107I	GGYRCC	1 cut(s)	141
BspTNI	GGTCTC	1 cut(s)	551
BsrDI	GCAATG	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	392
BssECI	CCNNGG	6 cut(s)	152, 165, 259, 297, 438, 452
BssMI	GATC	2 cut(s)	156, 442
BssNAI	GTATAC	1 cut(s)	279
BssT1I	CCWWGG	3 cut(s)	152, 259, 438
Bst1107I	GTATAC	1 cut(s)	279
Bst2UI	CCWGG	2 cut(s)	167, 453
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	531
BstAPI	GCANNNNNTGC	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	201, 205
BstFNI	CGCG	2 cut(s)	194, 288
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	2 cut(s)	159, 445
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	2 cut(s)	156, 442
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 200, 213
BstNI	CCWGG	2 cut(s)	167, 453
BstNSI	RCATGY	3 cut(s)	216, 285, 534
BstSCI	CCNGG	6 cut(s)	137, 165, 176, 252, 297, 451
BstSLI	GKGCMC	2 cut(s)	205, 363
BstUI	CGCG	2 cut(s)	194, 288
BstXI	CCANNNNNNTGG	1 cut(s)	486
BstZ17I	GTATAC	1 cut(s)	279
BstZI	CGGCCG	1 cut(s)	174
BsuRI	GGCC	3 cut(s)	151, 176, 186
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	2 cut(s)	399, 513
Cac8I	GCNNGC	2 cut(s)	201, 205
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	4 cut(s)	35, 213, 282, 531
CviJI	RGCY	6 cut(s)	151, 176, 186, 325, 391, 478
CviKI_1	RGCY	6 cut(s)	151, 176, 186, 325, 391, 478
CviQI	GTAC	1 cut(s)	31
DpnI	GATC	2 cut(s)	158, 444
DpnII	GATC	2 cut(s)	156, 442
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
EaeI	YGGCCR	2 cut(s)	174, 184
EagI	CGGCCG	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
EciI	GGCGGA	1 cut(s)	506
EclXI	CGGCCG	1 cut(s)	174
Eco130I	CCWWGG	3 cut(s)	152, 259, 438
Eco31I	GGTCTC	1 cut(s)	551
Eco47I	GGWCC	1 cut(s)	256
Eco52I	CGGCCG	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	165, 451
EcoT14I	CCWWGG	3 cut(s)	152, 259, 438
ErhI	CCWWGG	3 cut(s)	152, 259, 438
FaeI	CATG	4 cut(s)	38, 216, 285, 534
FaiI	YATR	6 cut(s)	36, 214, 279, 283, 532, 580
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	4 cut(s)	34, 212, 281, 530
FauI	CCCGC	1 cut(s)	192
FblI	GTMKAC	1 cut(s)	278
Fnu4HI	GCNGC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	174
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	1 cut(s)	174
HaeIII	GGCC	3 cut(s)	151, 176, 186
HapII	CCGG	6 cut(s)	139, 177, 254, 299, 326, 482
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	4 cut(s)	38, 216, 285, 534
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HpaII	CCGG	6 cut(s)	139, 177, 254, 299, 326, 482
HphI	GGTGA	3 cut(s)	16, 37, 557
Hpy166II	GTNNAC	3 cut(s)	241, 279, 361
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	1 cut(s)	160
Hpy8I	GTNNAC	3 cut(s)	241, 279, 361
HpyAV	CCTTC	4 cut(s)	10, 460, 547, 559
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	2 cut(s)	55, 429
HpyCH4V	TGCA	3 cut(s)	52, 361, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 200, 213
HpySE526I	ACGT	2 cut(s)	55, 429
Hsp92II	CATG	4 cut(s)	38, 216, 285, 534
HspAI	GCGC	1 cut(s)	192
Kzo9I	GATC	2 cut(s)	156, 442
LmnI	GCTCC	2 cut(s)	421, 475
MaeII	ACGT	2 cut(s)	55, 429
MaeIII	GTNAC	3 cut(s)	265, 289, 383
MalI	GATC	2 cut(s)	158, 444
MboI	GATC	2 cut(s)	156, 442
MboII	GAAGA	1 cut(s)	548
MhlI	GDGCHC	3 cut(s)	205, 363, 451
MluCI	AATT	1 cut(s)	102
MmeI	TCCRAC	2 cut(s)	315, 396
MnlI	CCTC	8 cut(s)	100, 163, 297, 322, 412, 453, 489, 509
MslI	CAYNNNNRTG	1 cut(s)	217
MspI	CCGG	6 cut(s)	139, 177, 254, 299, 326, 482
MspR9I	CCNGG	6 cut(s)	139, 167, 178, 254, 299, 453
Mva1269I	GAATGC	2 cut(s)	358, 403
MvaI	CCWGG	2 cut(s)	167, 453
MvnI	CGCG	2 cut(s)	194, 288
MwoI	GCNNNNNNNGC	3 cut(s)	148, 200, 213
NciI	CCSGG	4 cut(s)	139, 178, 254, 299
NdeII	GATC	2 cut(s)	156, 442
NlaIII	CATG	4 cut(s)	38, 216, 285, 534
NlaIV	GGNNCC	3 cut(s)	143, 436, 477
NmuCI	GTSAC	1 cut(s)	265
NspI	RCATGY	3 cut(s)	216, 285, 534
PciI	ACATGT	2 cut(s)	281, 530
PctI	GAATGC	2 cut(s)	358, 403
PkrI	GCNGC	1 cut(s)	175
PscI	ACATGT	2 cut(s)	281, 530
Psp1406I	AACGTT	1 cut(s)	55
Psp6I	CCWGG	2 cut(s)	165, 451
PspGI	CCWGG	2 cut(s)	165, 451
PspN4I	GGNNCC	3 cut(s)	143, 436, 477
PspPI	GGNCC	1 cut(s)	256
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	217
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	2 cut(s)	156, 442
Sau96I	GGNCC	1 cut(s)	256
ScrFI	CCNGG	6 cut(s)	139, 167, 178, 254, 299, 453
SduI	GDGCHC	3 cut(s)	205, 363, 451
SetI	ASST	7 cut(s)	58, 111, 147, 432, 454, 471, 547
SinI	GGWCC	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	217
Sse9I	AATT	1 cut(s)	102
SsiI	CCGC	6 cut(s)	173, 199, 294, 356, 401, 491
SspI	AATATT	1 cut(s)	133
StyD4I	CCNGG	6 cut(s)	137, 165, 176, 252, 297, 451
StyI	CCWWGG	3 cut(s)	152, 259, 438
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	2 cut(s)	58, 432
TaqI	TCGA	1 cut(s)	445
TaqII	GACCGA	1 cut(s)	575
TasI	AATT	1 cut(s)	102
TauI	GCSGC	1 cut(s)	176
TscAI	CASTG	2 cut(s)	399, 513
TseFI	GTSAC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	3 cut(s)	102, 359, 365
TspRI	CASTG	2 cut(s)	399, 513
VneI	GTGCAC	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	256
XceI	RCATGY	3 cut(s)	216, 285, 534
XcmI	CCANNNNNNNNNTGG	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.