RchiOBHm_Chr2g0174101

Glycosyl transferase family 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001421
Physical Location & Seq
Forward (+)
86807665 .. 86808111
447 bp
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UTR
Exon/CDS
Intron
PRQ54127

Sequence Viewer

Length: 447 bp
ATGCTCCATATGGTGAGGAACCAGGGTCGGTTCTTGAAGGAATATTGGGTCATATACCATGCTGAAATGGGAGTGCAACGTTGGTTTATTTACGACAACAATAGTGATGATGAAACTGATGTCGTTATTGAGCTTCTACAGAGTGGGAACTACAACATTACCCGGCACCTCTGGCCTTGGATCAAGACCCAGGAGGCCGGGTTCGTGCATTGCGCGTTACGGCCGCGCAAGACGTGCCAGTGGGTTGATGTGGACGAGTTTTTTCACATGCCTTCGGGGTTATTATTACATGACGTGCTGCCCAACCAGTCCAAGTATGGTTATGGTGAGGTTCAGGCTTGGTGCTATATTTTTGGGCAGTCGGGCCTCAAGAGTGTCCCGATTCAGGGCGTGACGGTAGGGTACACTTGTTGCGTGGCGGCCCGGATAGGCACAAGAGCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92 zf-C3HC4

Protein Analysis

148

Amino Acids

17.17

Weight (kDa)

6.57

Isoelectric Point (pI)

33.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_tranf_2_4 PF13704 14 - 92 2.8e-07 Glycosyl transferase family 2
Glyco_transf_92 PF01697 16 - 102 1.6e-13 Glycosyltransferase family 92
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 165
AccII CGCG 2 cut(s) 215, 226
AciI CCGC 2 cut(s) 224, 419
AclI AACGTT 1 cut(s) 79
AclWI GGATC 1 cut(s) 188
AcoI YGGCCR 1 cut(s) 221
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 2 cut(s) 385, 386
AgsI TTSAA 1 cut(s) 37
AjiI CACGTC 2 cut(s) 234, 295
AjnI CCWGG 2 cut(s) 21, 189
AloI GAACNNNNNNTCC 2 cut(s) 185, 217
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
AlwI GGATC 1 cut(s) 188
AoxI GGCC 5 cut(s) 173, 195, 221, 364, 420
ApeKI GCWGC 1 cut(s) 298
AspLEI GCGC 2 cut(s) 215, 228
AspS9I GGNCC 2 cut(s) 364, 421
AsuC2I CCSGG 3 cut(s) 163, 199, 424
AsuHPI GGTGA 2 cut(s) 25, 338
BaeI ACNNNNGTAYC 2 cut(s) 394, 427
BanI GGYRCC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 285
BceAI ACGGC 1 cut(s) 236
BciT130I CCWGG 2 cut(s) 23, 191
BcnI CCSGG 3 cut(s) 163, 199, 424
BfmI CTRYAG 1 cut(s) 137
BisI GCNGC 3 cut(s) 224, 299, 420
BlsI GCNGC 3 cut(s) 225, 300, 421
Bme1390I CCNGG 5 cut(s) 23, 163, 191, 199, 424
BmgBI CACGTC 2 cut(s) 234, 295
BmgT120I GGNCC 2 cut(s) 364, 421
BmiI GGNNCC 2 cut(s) 20, 167
BmrFI CCNGG 5 cut(s) 23, 163, 191, 199, 424
BpuEI CTTGAG 1 cut(s) 353
BpuMI CCSGG 3 cut(s) 163, 199, 424
BsaJI CCNNGG 3 cut(s) 22, 176, 189
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 2 cut(s) 385, 386
Bse1I ACTGG 2 cut(s) 238, 307
Bse3DI GCAATG 1 cut(s) 208
BseBI CCWGG 2 cut(s) 23, 191
BseDI CCNNGG 3 cut(s) 22, 176, 189
BseLI CCNNNNNNNGG 2 cut(s) 385, 386
BseMI GCAATG 1 cut(s) 208
BseNI ACTGG 2 cut(s) 238, 307
BseX3I CGGCCG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 285
Bsh1236I CGCG 2 cut(s) 215, 226
Bsh1285I CGRYCG 1 cut(s) 224
BshFI GGCC 5 cut(s) 175, 197, 223, 366, 422
BshNI GGYRCC 1 cut(s) 165
BsiEI CGRYCG 1 cut(s) 224
BsiSI CCGG 3 cut(s) 163, 198, 424
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 2 cut(s) 385, 386
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 5 cut(s) 175, 197, 223, 366, 422
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 2 cut(s) 224, 419
BspANI GGCC 5 cut(s) 175, 197, 223, 366, 422
BspFNI CGCG 2 cut(s) 215, 226
BspLI GGNNCC 2 cut(s) 20, 167
BspPI GGATC 1 cut(s) 188
BspT107I GGYRCC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 208
BsrI ACTGG 2 cut(s) 238, 307
BssECI CCNNGG 3 cut(s) 22, 176, 189
BssMI GATC 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 176
Bst2UI CCWGG 2 cut(s) 23, 191
Bst4CI ACNGT 1 cut(s) 397
BstAPI GCANNNNNTGC 1 cut(s) 234
BstFNI CGCG 2 cut(s) 215, 226
BstHHI GCGC 2 cut(s) 215, 228
BstKTI GATC 1 cut(s) 183
BstMBI GATC 1 cut(s) 180
BstMCI CGRYCG 1 cut(s) 224
BstMWI GCNNNNNNNGC 2 cut(s) 172, 234
BstNI CCWGG 2 cut(s) 23, 191
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 5 cut(s) 21, 161, 189, 197, 422
BstSFI CTRYAG 1 cut(s) 137
BstUI CGCG 2 cut(s) 215, 226
BstV1I GCAGC 1 cut(s) 285
BstZI CGGCCG 1 cut(s) 221
BsuRI GGCC 5 cut(s) 175, 197, 223, 366, 422
BtrI CACGTC 2 cut(s) 234, 295
BtsIMutI CAGTG 1 cut(s) 245
CfoI GCGC 2 cut(s) 215, 228
Cfr13I GGNCC 2 cut(s) 364, 421
Csp6I GTAC 1 cut(s) 403
CviAII CATG 3 cut(s) 59, 268, 290
CviJI RGCY 7 cut(s) 133, 175, 197, 223, 338, 366, 422
CviKI_1 RGCY 7 cut(s) 133, 175, 197, 223, 338, 366, 422
CviQI GTAC 1 cut(s) 403
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
EaeI YGGCCR 1 cut(s) 221
EagI CGGCCG 1 cut(s) 221
EclXI CGGCCG 1 cut(s) 221
Eco130I CCWWGG 1 cut(s) 176
Eco52I CGGCCG 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 21, 189
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 3 cut(s) 62, 271, 293
FaqI GGGAC 1 cut(s) 362
FatI CATG 3 cut(s) 58, 267, 289
FauNDI CATATG 1 cut(s) 9
Fnu4HI GCNGC 3 cut(s) 224, 299, 420
Fsp4HI GCNGC 3 cut(s) 224, 299, 420
GlaI GCGC 2 cut(s) 214, 227
GluI GCNGC 3 cut(s) 224, 299, 420
HaeIII GGCC 5 cut(s) 175, 197, 223, 366, 422
HapII CCGG 3 cut(s) 163, 198, 424
HhaI GCGC 2 cut(s) 215, 228
Hin1II CATG 3 cut(s) 62, 271, 293
Hin6I GCGC 2 cut(s) 213, 226
HinP1I GCGC 2 cut(s) 213, 226
HinfI GANTC 1 cut(s) 382
HpaII CCGG 3 cut(s) 163, 198, 424
HphI GGTGA 2 cut(s) 25, 338
Hpy166II GTNNAC 2 cut(s) 253, 405
Hpy188III TCNNGA 4 cut(s) 34, 184, 370, 379
Hpy8I GTNNAC 2 cut(s) 253, 405
HpyAV CCTTC 2 cut(s) 31, 282
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4IV ACGT 3 cut(s) 79, 233, 294
HpyCH4V TGCA 2 cut(s) 76, 208
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 234
HpySE526I ACGT 3 cut(s) 79, 233, 294
Hsp92II CATG 3 cut(s) 62, 271, 293
HspAI GCGC 2 cut(s) 213, 226
Kzo9I GATC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 9
Lsp1109I GCAGC 1 cut(s) 285
MaeII ACGT 3 cut(s) 79, 233, 294
MaeIII GTNAC 2 cut(s) 216, 391
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MnlI CCTC 5 cut(s) 9, 179, 187, 322, 377
MspI CCGG 3 cut(s) 163, 198, 424
MspR9I CCNGG 5 cut(s) 23, 163, 191, 199, 424
MvaI CCWGG 2 cut(s) 23, 191
MvnI CGCG 2 cut(s) 215, 226
MwoI GCNNNNNNNGC 2 cut(s) 172, 234
NciI CCSGG 3 cut(s) 163, 199, 424
NdeI CATATG 1 cut(s) 9
NdeII GATC 1 cut(s) 180
NlaIII CATG 3 cut(s) 62, 271, 293
NlaIV GGNNCC 2 cut(s) 20, 167
NmuCI GTSAC 1 cut(s) 391
NspI RCATGY 1 cut(s) 271
PfeI GAWTC 1 cut(s) 382
PkrI GCNGC 3 cut(s) 225, 300, 421
Psp1406I AACGTT 1 cut(s) 79
Psp6I CCWGG 2 cut(s) 21, 189
PspGI CCWGG 2 cut(s) 21, 189
PspN4I GGNNCC 2 cut(s) 20, 167
PspPI GGNCC 2 cut(s) 364, 421
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SatI GCNGC 3 cut(s) 224, 299, 420
Sau3AI GATC 1 cut(s) 180
Sau96I GGNCC 2 cut(s) 364, 421
ScrFI CCNGG 5 cut(s) 23, 163, 191, 199, 424
SetI ASST 6 cut(s) 82, 135, 171, 236, 297, 333
SfcI CTRYAG 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
SsiI CCGC 2 cut(s) 224, 419
SspI AATATT 1 cut(s) 44
StyD4I CCNGG 5 cut(s) 21, 161, 189, 197, 422
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 397
TaiI ACGT 3 cut(s) 82, 236, 297
TauI GCSGC 2 cut(s) 226, 422
TfiI GAWTC 1 cut(s) 382
TscAI CASTG 1 cut(s) 245
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 1 cut(s) 298
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 1 cut(s) 126
TspRI CASTG 1 cut(s) 245
XceI RCATGY 1 cut(s) 271
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.