RchiOBHm_Chr2g0174111

Glycosyl transferase family 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001421
Physical Location & Seq
Forward (+)
86809225 .. 86811806
2582 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54128

Sequence Viewer

Length: 1200 bp
ATGGTGAGAGAAGAAGAACCGAAACAGAGCCCAAAAACTCAACCAAGAGAATCGAACCCAGTTGAGATCGGAAGTGGCCCGAGTGGGAACAGCTTGATGTTCAGTCCCAGATTCAAATCGGCGGCGGCCATGGCCGGTTGGGACGAAGAGTCTCTCCTGATAGCAAGCCTTGTCGTTGACGACACGCCGGAGCAAGATATTAAGCAGAAGAAACGATCTGTTTTCCGGTCCAAGACTCCACCCACCAATTCATCAAGAAGAAAGCGGAGAGTTCAGCGAAAGAGCCCGGTTTCGATCCCAGTGGCTGTTCTTGACCTTGATAGTGAAGAAACTACAAAAGAGGAGAGTGTGAAAGAGAAGGTAGAGCCTGAAATTGTTGTTGTGAATGAAGAAAAGAAAACAGGAGAATATGAGAAGATGGGTGAGAGCTCTGGTGCTTCGTGCTCAAGCTCGAATCTTCCTTGCATGGATAAGCTCAGGGATGAGCTTTCTTGTGCTATCTGCTTGGAGATTTGCTTTGAACCCAGTACAACTCCTTGTGGACACAGCTTCTGTAAGAAATGCTTGCGATCGGCTGCTGATAAATGTGGGAAGAGGTGCCCCAAATGCAGGCAGCTAATGAGCAATGGAAGATCTTGCACCGTGAACACAGTTCTATGGAACACGATTCAGCTTCTGTTTCCTCAAGAAGTTGAAGCAAGGAAAGCAGCTGGAGCCTTGAACAGTCGTGAAGAAGGTGAGCGGGAAATCCCTGATAAGGCCTTTAGTAGTAGCAACTCGAGGAATCAAAGCAGAAGAGTATCTGGCAGAGATGTGGCTGTAAGGAGAAGAAGGGTAGTGTTGAGCCAAGATGATGATGAGGACGATCCTGCACCACTAGCTATAAGGTTACAAATGAGAGAAGCAGAGAATCAAAATCGAGGACTAGGCAGCTTGGCTCGACCAGTAAGGATATCATCAGGCAGAGAAATTAGGCCTATAATATCAAGCAGAGATGCAAATCCGACGAGTAGTAGAAGGGTGCCAAACCAACATGAGGATGCTGCATTAGCTCTGAGATTACAGAGGGAGGAGTTTATGGAGGCTTTTAGGGGAACCAGCAGTGATCAATCAAGTGCCTCTCTTTCGTTGGCTAGAGCAAACCTGAGAGCCATGGCATCTAGAGCCACTAACCGTGGTGCTGCAACCCGATTTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92 zf-C3HC4

Protein Analysis

399

Amino Acids

44.28

Weight (kDa)

9.15

Isoelectric Point (pI)

72.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4 PF00097 165 - 203 3.5e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 165 - 201 1.1e-06 RING-type zinc-finger
zf-C3HC4_2 PF13923 165 - 203 9.9e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 597, 1021
AccBSI CCGCTC 1 cut(s) 742
AciI CCGC 4 cut(s) 122, 125, 265, 742
AclWI GGATC 2 cut(s) 289, 860
AcoI YGGCCR 2 cut(s) 126, 132
AfaI GTAC 1 cut(s) 529
AfiI CCNNNNNNNGG 3 cut(s) 609, 757, 1036
AgsI TTSAA 4 cut(s) 115, 521, 695, 721
AhdI GACNNNNNGTC 1 cut(s) 148
Alw21I GWGCWC 2 cut(s) 431, 446
Alw26I GTCTC 1 cut(s) 156
AlwI GGATC 2 cut(s) 289, 860
AlwNI CAGNNNCTG 3 cut(s) 305, 552, 676
Ama87I CYCGRG 2 cut(s) 79, 778
AoxI GGCC 5 cut(s) 76, 126, 132, 759, 974
ApeKI GCWGC 6 cut(s) 575, 613, 707, 930, 1043, 1181
AspS9I GGNCC 2 cut(s) 77, 228
AsuC2I CCSGG 1 cut(s) 287
AsuHPI GGTGA 3 cut(s) 16, 434, 749
AvaI CYCGRG 2 cut(s) 79, 778
AvaII GGWCC 1 cut(s) 228
BaeGI GKGCMC 1 cut(s) 602
BanI GGYRCC 2 cut(s) 597, 1021
BanII GRGCYC 3 cut(s) 32, 287, 431
Bbv12I GWGCWC 2 cut(s) 431, 446
BbvI GCAGC 6 cut(s) 562, 625, 719, 942, 1030, 1168
BccI CCATC 1 cut(s) 412
BclI TGATCA 1 cut(s) 1105
BcnI CCSGG 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 4 cut(s) 878, 926, 1134, 1161
BglII AGATCT 1 cut(s) 632
BisI GCNGC 8 cut(s) 123, 126, 576, 614, 708, 931, 1044, 1182
BlsI GCNGC 8 cut(s) 124, 127, 577, 615, 709, 932, 1045, 1183
Bme1390I CCNGG 1 cut(s) 287
Bme18I GGWCC 1 cut(s) 228
BmeRI GACNNNNNGTC 1 cut(s) 148
BmeT110I CYCGRG 2 cut(s) 79, 778
BmgT120I GGNCC 2 cut(s) 77, 228
BmiI GGNNCC 4 cut(s) 599, 715, 1023, 1096
BmrFI CCNGG 1 cut(s) 287
BmrI ACTGGG 3 cut(s) 53, 293, 519
BmsI GCATC 3 cut(s) 985, 1030, 1166
BmuI ACTGGG 3 cut(s) 53, 293, 519
BpmI CTGGAG 1 cut(s) 732
Bpu10I CCTNAGC 1 cut(s) 476
BpuEI CTTGAG 2 cut(s) 430, 669
BpuMI CCSGG 1 cut(s) 287
BsaBI GATNNNNATC 2 cut(s) 115, 999
BsaJI CCNNGG 3 cut(s) 129, 1152, 1174
BsaWI WCCGGW 1 cut(s) 225
Bsc4I CCNNNNNNNGG 3 cut(s) 609, 757, 1036
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 4 cut(s) 59, 299, 525, 944
Bse3DI GCAATG 1 cut(s) 631
Bse8I GATNNNNATC 2 cut(s) 115, 999
BseDI CCNNGG 3 cut(s) 129, 1152, 1174
BseGI GGATG 2 cut(s) 487, 1045
BseJI GATNNNNATC 2 cut(s) 115, 999
BseLI CCNNNNNNNGG 3 cut(s) 609, 757, 1036
BseMI GCAATG 1 cut(s) 631
BseMII CTCAG 3 cut(s) 490, 1046, 1136
BseNI ACTGG 4 cut(s) 59, 299, 525, 944
BseRI GAGGAG 2 cut(s) 356, 1085
BseSI GKGCMC 1 cut(s) 602
BseXI GCAGC 6 cut(s) 562, 625, 719, 942, 1030, 1168
BsgI GTGCAG 1 cut(s) 855
Bsh1285I CGRYCG 1 cut(s) 572
BshFI GGCC 5 cut(s) 78, 128, 134, 761, 976
BshNI GGYRCC 2 cut(s) 597, 1021
BsiEI CGRYCG 1 cut(s) 572
BsiHKAI GWGCWC 2 cut(s) 431, 446
BsiHKCI CYCGRG 2 cut(s) 79, 778
BsiSI CCGG 4 cut(s) 135, 188, 226, 287
BslFI GGGAC 2 cut(s) 90, 155
BslI CCNNNNNNNGG 3 cut(s) 609, 757, 1036
BsmAI GTCTC 1 cut(s) 156
BsmFI GGGAC 2 cut(s) 90, 155
BsnI GGCC 5 cut(s) 78, 128, 134, 761, 976
BsoBI CYCGRG 2 cut(s) 79, 778
Bsp1286I GDGCHC 5 cut(s) 32, 287, 431, 446, 602
Bsp143I GATC 7 cut(s) 66, 215, 294, 569, 632, 865, 1105
Bsp19I CCATGG 2 cut(s) 129, 1152
BspACI CCGC 4 cut(s) 122, 125, 265, 742
BspANI GGCC 5 cut(s) 78, 128, 134, 761, 976
BspCNI CTCAG 3 cut(s) 489, 1047, 1137
BspLI GGNNCC 4 cut(s) 599, 715, 1023, 1096
BspPI GGATC 2 cut(s) 289, 860
BspT107I GGYRCC 2 cut(s) 597, 1021
BsrBI CCGCTC 1 cut(s) 742
BsrDI GCAATG 1 cut(s) 631
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 4 cut(s) 59, 299, 525, 944
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 3 cut(s) 129, 1152, 1174
BssMI GATC 7 cut(s) 66, 215, 294, 569, 632, 865, 1105
BssT1I CCWWGG 2 cut(s) 129, 1152
Bst4CI ACNGT 4 cut(s) 643, 652, 725, 1175
Bst6I CTCTTC 3 cut(s) 141, 587, 790
BstC8I GCNNGC 3 cut(s) 166, 566, 611
BstDEI CTNAG 3 cut(s) 476, 1055, 1145
BstDSI CCRYGG 3 cut(s) 129, 1152, 1174
BstF5I GGATG 2 cut(s) 487, 1045
BstKTI GATC 7 cut(s) 69, 218, 297, 572, 635, 868, 1108
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 7 cut(s) 66, 215, 294, 569, 632, 865, 1105
BstMCI CGRYCG 1 cut(s) 572
BstMWI GCNNNNNNNGC 7 cut(s) 131, 606, 704, 713, 878, 1049, 1163
BstSCI CCNGG 1 cut(s) 285
BstSLI GKGCMC 1 cut(s) 602
BstV1I GCAGC 6 cut(s) 562, 625, 719, 942, 1030, 1168
BstX2I RGATCY 1 cut(s) 632
BstYI RGATCY 1 cut(s) 632
BsuRI GGCC 5 cut(s) 78, 128, 134, 761, 976
BtgI CCRYGG 3 cut(s) 129, 1152, 1174
BtsCI GGATG 2 cut(s) 487, 1045
BtsI GCAGTG 1 cut(s) 1108
BtsIMutI CAGTG 2 cut(s) 306, 1108
Cac8I GCNNGC 3 cut(s) 166, 566, 611
CaiI CAGNNNCTG 3 cut(s) 305, 552, 676
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 77, 228
Csp6I GTAC 1 cut(s) 528
CviAII CATG 4 cut(s) 130, 466, 1034, 1153
CviQI GTAC 1 cut(s) 528
DdeI CTNAG 3 cut(s) 476, 1055, 1145
DpnI GATC 7 cut(s) 68, 217, 296, 571, 634, 867, 1107
DpnII GATC 7 cut(s) 66, 215, 294, 569, 632, 865, 1105
DriI GACNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 2 cut(s) 126, 132
Eam1104I CTCTTC 3 cut(s) 141, 587, 790
Eam1105I GACNNNNNGTC 1 cut(s) 148
EarI CTCTTC 3 cut(s) 141, 587, 790
Ecl136II GAGCTC 1 cut(s) 429
Eco130I CCWWGG 2 cut(s) 129, 1152
Eco147I AGGCCT 2 cut(s) 761, 976
Eco24I GRGCYC 3 cut(s) 32, 287, 431
Eco32I GATATC 1 cut(s) 954
Eco47I GGWCC 1 cut(s) 228
Eco53kI GAGCTC 1 cut(s) 429
Eco88I CYCGRG 2 cut(s) 79, 778
EcoICRI GAGCTC 1 cut(s) 429
EcoRV GATATC 1 cut(s) 954
EcoT14I CCWWGG 2 cut(s) 129, 1152
EcoT38I GRGCYC 3 cut(s) 32, 287, 431
ErhI CCWWGG 2 cut(s) 129, 1152
FaeI CATG 4 cut(s) 133, 469, 1037, 1156
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FaqI GGGAC 2 cut(s) 90, 155
FatI CATG 4 cut(s) 129, 465, 1033, 1152
FauI CCCGC 1 cut(s) 735
FbaI TGATCA 1 cut(s) 1105
Fnu4HI GCNGC 8 cut(s) 123, 126, 576, 614, 708, 931, 1044, 1182
FokI GGATG 2 cut(s) 494, 1052
FriOI GRGCYC 3 cut(s) 32, 287, 431
Fsp4HI GCNGC 8 cut(s) 123, 126, 576, 614, 708, 931, 1044, 1182
FspBI CTAG 4 cut(s) 878, 926, 1134, 1161
GluI GCNGC 8 cut(s) 123, 126, 576, 614, 708, 931, 1044, 1182
GsuI CTGGAG 1 cut(s) 732
HaeIII GGCC 5 cut(s) 78, 128, 134, 761, 976
HapII CCGG 4 cut(s) 135, 188, 226, 287
Hin1II CATG 4 cut(s) 133, 469, 1037, 1156
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 8 cut(s) 50, 111, 149, 235, 454, 667, 784, 910
HpaII CCGG 4 cut(s) 135, 188, 226, 287
HphI GGTGA 3 cut(s) 16, 434, 749
Hpy166II GTNNAC 3 cut(s) 178, 542, 646
Hpy188I TCNGA 3 cut(s) 71, 1005, 1056
Hpy188III TCNNGA 6 cut(s) 157, 255, 311, 686, 728, 1161
Hpy8I GTNNAC 3 cut(s) 178, 542, 646
Hpy99I CGWCG 1 cut(s) 1009
HpyAV CCTTC 4 cut(s) 352, 728, 825, 1011
HpyCH4III ACNGT 4 cut(s) 643, 652, 725, 1175
HpyCH4V TGCA 7 cut(s) 465, 609, 639, 872, 998, 1046, 1184
HpyF10VI GCNNNNNNNGC 7 cut(s) 131, 606, 704, 713, 878, 1049, 1163
HpyF3I CTNAG 3 cut(s) 476, 1055, 1145
Hsp92II CATG 4 cut(s) 133, 469, 1037, 1156
Ksp22I TGATCA 1 cut(s) 1105
Kzo9I GATC 7 cut(s) 66, 215, 294, 569, 632, 865, 1105
LmnI GCTCC 2 cut(s) 190, 713
Lsp1109I GCAGC 6 cut(s) 562, 625, 719, 942, 1030, 1168
LweI GCATC 3 cut(s) 985, 1030, 1166
MaeI CTAG 4 cut(s) 878, 926, 1134, 1161
MaeIII GTNAC 1 cut(s) 888
MalI GATC 7 cut(s) 68, 217, 296, 571, 634, 867, 1107
MbiI CCGCTC 1 cut(s) 742
MboI GATC 7 cut(s) 66, 215, 294, 569, 632, 865, 1105
MflI RGATCY 1 cut(s) 632
MhlI GDGCHC 5 cut(s) 32, 287, 431, 446, 602
MluCI AATT 3 cut(s) 247, 372, 969
MlyI GAGTC 2 cut(s) 158, 229
MmeI TCCRAC 1 cut(s) 1028
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 1038
MspA1I CMGCKG 1 cut(s) 710
MspI CCGG 4 cut(s) 135, 188, 226, 287
MspR9I CCNGG 1 cut(s) 287
MwoI GCNNNNNNNGC 7 cut(s) 131, 606, 704, 713, 878, 1049, 1163
NciI CCSGG 1 cut(s) 287
NcoI CCATGG 2 cut(s) 129, 1152
NdeII GATC 7 cut(s) 66, 215, 294, 569, 632, 865, 1105
NlaIII CATG 4 cut(s) 133, 469, 1037, 1156
NlaIV GGNNCC 4 cut(s) 599, 715, 1023, 1096
PaeR7I CTCGAG 1 cut(s) 778
PceI AGGCCT 2 cut(s) 761, 976
PfeI GAWTC 6 cut(s) 50, 111, 454, 667, 784, 910
PkrI GCNGC 8 cut(s) 124, 127, 577, 615, 709, 932, 1045, 1183
Ple19I CGATCG 1 cut(s) 572
PleI GAGTC 2 cut(s) 157, 229
PpsI GAGTC 2 cut(s) 157, 229
Psp124BI GAGCTC 1 cut(s) 431
PspN4I GGNNCC 4 cut(s) 599, 715, 1023, 1096
PspPI GGNCC 2 cut(s) 77, 228
PspXI VCTCGAGB 1 cut(s) 778
PstNI CAGNNNCTG 3 cut(s) 305, 552, 676
PsuI RGATCY 1 cut(s) 632
PvuI CGATCG 1 cut(s) 572
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 1 cut(s) 529
RsaNI GTAC 1 cut(s) 528
RseI CAYNNNNRTG 1 cut(s) 1038
SacI GAGCTC 1 cut(s) 431
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 8 cut(s) 123, 126, 576, 614, 708, 931, 1044, 1182
Sau3AI GATC 7 cut(s) 66, 215, 294, 569, 632, 865, 1105
Sau96I GGNCC 2 cut(s) 77, 228
SchI GAGTC 2 cut(s) 158, 229
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 5 cut(s) 32, 287, 431, 446, 602
SfaNI GCATC 3 cut(s) 985, 1030, 1166
Sfr274I CTCGAG 1 cut(s) 778
SinI GGWCC 1 cut(s) 228
SlaI CTCGAG 1 cut(s) 778
SmiMI CAYNNNNRTG 1 cut(s) 1038
SmlI CTYRAG 3 cut(s) 445, 684, 778
SmoI CTYRAG 3 cut(s) 445, 684, 778
Sse9I AATT 3 cut(s) 247, 372, 969
SseBI AGGCCT 2 cut(s) 761, 976
SsiI CCGC 4 cut(s) 122, 125, 265, 742
SspMI CTAG 4 cut(s) 878, 926, 1134, 1161
SstI GAGCTC 1 cut(s) 431
StuI AGGCCT 2 cut(s) 761, 976
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 2 cut(s) 129, 1152
TaaI ACNGT 4 cut(s) 643, 652, 725, 1175
TaqI TCGA 6 cut(s) 53, 293, 452, 779, 919, 940
TasI AATT 3 cut(s) 247, 372, 969
TatI WGTACW 1 cut(s) 527
TauI GCSGC 2 cut(s) 125, 128
TfiI GAWTC 6 cut(s) 50, 111, 454, 667, 784, 910
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 2 cut(s) 306, 1108
TseI GCWGC 6 cut(s) 575, 613, 707, 930, 1043, 1181
TspDTI ATGAA 2 cut(s) 240, 402
TspRI CASTG 2 cut(s) 306, 1108
VpaK11BI GGWCC 1 cut(s) 228
XbaI TCTAGA 1 cut(s) 1160
XhoI CTCGAG 1 cut(s) 778
XspI CTAG 4 cut(s) 878, 926, 1134, 1161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.