Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001421

Physical Location & Seq

Genomic Coordinates Forward (+)

80263585 .. 80265851

Gene Structure 2267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG629700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTGGGAAGAGGTGCCCCAAATGCAGGCAGCTAATGAGGTATGGTATTTCAGCTATAATTTCAGGTTGATCAAATTGGGGCTTGGCATTACTGTAATGCAATTGTGGGTTTTGTCCGTCATCATTTGCAGCAATGGAAGATCTTGCACCGTGAACACAGTTCTATGGAACACGATTCAGCTTCTGTTTCCTCAAGAAGTTGAAGCAAGGAAAGCAGCTGGAGCCTTGAACAGTCGTGAAGAAGGTGAGCGGGAAATCCCTGATAAGGCCTTTAGTAGTAGCAACTCGAGGAATCAAAGCAGAAGAGTATCTGGCAGAGATGTGGCTGTAAGGAGAAGAAGGGTAGTGTTGAGCCAAGATGATGATGAGGACGATCCTGCACCACTAGCTATAAGGTTACAAATGAGAGAAGCAGAGAATCAAAATCGAGGACTAGGCAGCTTGGCTCGACCAGTAAGGATATCATCAGGCAGAGAAATTAGGCCTATAATATCAAGCAGAGATGCAAATCCGACGAGTAGTAGAAGGGTGCCAAACCAACATGAGGATGCTGCATTAGCTCTGAGATTACAGAGGGAGGAGTTTATGGAGGCTTTTAGGGGAACCAGCAGTGATCAATCAAGTGCCTCTCTTTCGTTGGCTAGAGCAAACCTGAGAGCCATGGCATCTAGAGCCACTAACCGTGGTGCTGCAACCCGATTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_92 zf-C3HC4

Protein Analysis

235

Amino Acids

26.42

Weight (kDa)

10.34

Isoelectric Point (pI)

57.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27330 AT5G40720 AT5G40720 AT5G40720
fragaria_vesca	FvH4_6g52450 FvH4_6g52460 FvH4_6g52470 FvH4_6g52470
malus_domestica	MD09G1017800.v1.1 MD09G1017900.v1.1 MD17G1018600.v1.1
prunus_persica	Prupe.3G299100_v2.0.a1
pyrus_communis	pycom111g01480 pycom111g01490 pycom17g01530
rosa_chinensis	RchiOBHm_Chr2g0174091 RchiOBHm_Chr2g0174101 RchiOBHm_Chr2g0174111
rosa_laevigata	RLG00000021621 RLG00000022246 RLG00000022247
rosa_multiflora	Rmu_co8270263.1_g000001 Rmu_co8399791.1_g000001 Rmu_sc0003016.1_g000002 Rmu_sc0003016.1_g000003 Rmu_sc0003188.1_g000035 Rmu_sc0003188.1_g000036 Rmu_sc0012378.1_g000002 Rmu_sc0023199.1_g000001 Rmu_sc0023199.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078450 Rroxscaffold_2G00078460 Rroxscaffold_2G00084880
rosa_rugosa	Rorug02G0523200 Rorug02G0574700 Rorug02G0574700
rosa_samantha	Rh2AG589300 Rh2AG654100 Rh2AG654200 Rh2AG654300 Rh2BG601500 Rh2BG665300 Rh2BG665400 Rh2BG665500 Rh2CG572000 Rh2CG629600 Rh2CG629700 Rh2DG611900 Rh2DG612000 Rh2DG680000 Rh2DG680100
rosa_wichuraiana	Rw2G053700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	13, 529
AccBSI	CCGCTC	1 cut(s)	250
AciI	CCGC	1 cut(s)	250
AclWI	GGATC	1 cut(s)	368
AfiI	CCNNNNNNNGG	3 cut(s)	25, 265, 544
AgsI	TTSAA	2 cut(s)	203, 229
AluBI	AGCT	7 cut(s)	32, 54, 181, 218, 389, 441, 560
AluI	AGCT	7 cut(s)	32, 54, 181, 218, 389, 441, 560
AlwI	GGATC	1 cut(s)	368
AlwNI	CAGNNNCTG	1 cut(s)	184
Ama87I	CYCGRG	1 cut(s)	286
AoxI	GGCC	2 cut(s)	267, 482
ApeKI	GCWGC	6 cut(s)	29, 129, 215, 438, 551, 689
AsuHPI	GGTGA	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	286
BaeGI	GKGCMC	1 cut(s)	18
BanI	GGYRCC	2 cut(s)	13, 529
BbvI	GCAGC	6 cut(s)	41, 141, 227, 450, 538, 676
BclI	TGATCA	2 cut(s)	69, 613
BfaI	CTAG	4 cut(s)	386, 434, 642, 669
BglII	AGATCT	1 cut(s)	140
BisI	GCNGC	6 cut(s)	30, 130, 216, 439, 552, 690
BlsI	GCNGC	6 cut(s)	31, 131, 217, 440, 553, 691
BmeT110I	CYCGRG	1 cut(s)	286
BmiI	GGNNCC	4 cut(s)	15, 223, 531, 604
BmsI	GCATC	3 cut(s)	493, 538, 674
BpmI	CTGGAG	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	507
BsaJI	CCNNGG	2 cut(s)	660, 682
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 265, 544
Bse1I	ACTGG	1 cut(s)	452
Bse3DI	GCAATG	1 cut(s)	139
Bse8I	GATNNNNATC	1 cut(s)	507
BseDI	CCNNGG	2 cut(s)	660, 682
BseGI	GGATG	1 cut(s)	553
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	3 cut(s)	25, 265, 544
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	2 cut(s)	554, 644
BseNI	ACTGG	1 cut(s)	452
BseRI	GAGGAG	1 cut(s)	593
BseSI	GKGCMC	1 cut(s)	18
BseXI	GCAGC	6 cut(s)	41, 141, 227, 450, 538, 676
BsgI	GTGCAG	1 cut(s)	363
BshFI	GGCC	2 cut(s)	269, 484
BshNI	GGYRCC	2 cut(s)	13, 529
BsiHKCI	CYCGRG	1 cut(s)	286
BslI	CCNNNNNNNGG	3 cut(s)	25, 265, 544
BsnI	GGCC	2 cut(s)	269, 484
BsoBI	CYCGRG	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	4 cut(s)	69, 140, 373, 613
Bsp19I	CCATGG	1 cut(s)	660
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	2 cut(s)	269, 484
BspCNI	CTCAG	2 cut(s)	555, 645
BspLI	GGNNCC	4 cut(s)	15, 223, 531, 604
BspPI	GGATC	1 cut(s)	368
BspT107I	GGYRCC	2 cut(s)	13, 529
BsrBI	CCGCTC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	452
BssECI	CCNNGG	2 cut(s)	660, 682
BssMI	GATC	4 cut(s)	69, 140, 373, 613
BssT1I	CCWWGG	1 cut(s)	660
Bst4CI	ACNGT	5 cut(s)	94, 151, 160, 233, 683
Bst6I	CTCTTC	2 cut(s)	3, 298
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	2 cut(s)	563, 653
BstDSI	CCRYGG	2 cut(s)	660, 682
BstF5I	GGATG	1 cut(s)	553
BstKTI	GATC	4 cut(s)	72, 143, 376, 616
BstMBI	GATC	4 cut(s)	69, 140, 373, 613
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 212, 221, 386, 557, 671
BstSLI	GKGCMC	1 cut(s)	18
BstV1I	GCAGC	6 cut(s)	41, 141, 227, 450, 538, 676
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BsuRI	GGCC	2 cut(s)	269, 484
BtgI	CCRYGG	2 cut(s)	660, 682
BtsCI	GGATG	1 cut(s)	553
BtsI	GCAGTG	1 cut(s)	616
BtsIMutI	CAGTG	1 cut(s)	616
Cac8I	GCNNGC	1 cut(s)	27
CaiI	CAGNNNCTG	1 cut(s)	184
CviAII	CATG	2 cut(s)	542, 661
DdeI	CTNAG	2 cut(s)	563, 653
DpnI	GATC	4 cut(s)	71, 142, 375, 615
DpnII	GATC	4 cut(s)	69, 140, 373, 613
Eam1104I	CTCTTC	2 cut(s)	3, 298
EarI	CTCTTC	2 cut(s)	3, 298
Eco130I	CCWWGG	1 cut(s)	660
Eco147I	AGGCCT	2 cut(s)	269, 484
Eco32I	GATATC	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	286
EcoRV	GATATC	1 cut(s)	462
EcoT14I	CCWWGG	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	660
FaeI	CATG	2 cut(s)	545, 664
FaiI	YATR	8 cut(s)	43, 57, 166, 392, 488, 543, 587, 662
FatI	CATG	2 cut(s)	541, 660
FauI	CCCGC	1 cut(s)	243
FbaI	TGATCA	2 cut(s)	69, 613
Fnu4HI	GCNGC	6 cut(s)	30, 130, 216, 439, 552, 690
FokI	GGATG	1 cut(s)	560
Fsp4HI	GCNGC	6 cut(s)	30, 130, 216, 439, 552, 690
FspBI	CTAG	4 cut(s)	386, 434, 642, 669
GluI	GCNGC	6 cut(s)	30, 130, 216, 439, 552, 690
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	269, 484
Hin1II	CATG	2 cut(s)	545, 664
HinfI	GANTC	3 cut(s)	175, 292, 418
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	2 cut(s)	513, 564
Hpy188III	TCNNGA	3 cut(s)	194, 236, 669
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	517
HpyAV	CCTTC	3 cut(s)	236, 333, 519
HpyCH4III	ACNGT	5 cut(s)	94, 151, 160, 233, 683
HpyCH4V	TGCA	8 cut(s)	25, 100, 129, 147, 380, 506, 554, 692
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 212, 221, 386, 557, 671
HpyF3I	CTNAG	2 cut(s)	563, 653
Hsp92II	CATG	2 cut(s)	545, 664
Ksp22I	TGATCA	2 cut(s)	69, 613
Kzo9I	GATC	4 cut(s)	69, 140, 373, 613
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	6 cut(s)	41, 141, 227, 450, 538, 676
LweI	GCATC	3 cut(s)	493, 538, 674
MaeI	CTAG	4 cut(s)	386, 434, 642, 669
MaeIII	GTNAC	1 cut(s)	396
MalI	GATC	4 cut(s)	71, 142, 375, 615
MbiI	CCGCTC	1 cut(s)	250
MboI	GATC	4 cut(s)	69, 140, 373, 613
MboII	GAAGA	5 cut(s)	20, 150, 251, 315, 348
MfeI	CAATTG	1 cut(s)	101
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	4 cut(s)	58, 74, 101, 477
MmeI	TCCRAC	1 cut(s)	536
MslI	CAYNNNNRTG	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	218
MunI	CAATTG	1 cut(s)	101
MwoI	GCNNNNNNNGC	6 cut(s)	22, 212, 221, 386, 557, 671
NcoI	CCATGG	1 cut(s)	660
NdeII	GATC	4 cut(s)	69, 140, 373, 613
NlaIII	CATG	2 cut(s)	545, 664
NlaIV	GGNNCC	4 cut(s)	15, 223, 531, 604
PaeR7I	CTCGAG	1 cut(s)	286
PceI	AGGCCT	2 cut(s)	269, 484
PfeI	GAWTC	3 cut(s)	175, 292, 418
PkrI	GCNGC	6 cut(s)	31, 131, 217, 440, 553, 691
PspN4I	GGNNCC	4 cut(s)	15, 223, 531, 604
PspXI	VCTCGAGB	1 cut(s)	286
PstNI	CAGNNNCTG	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	546
SatI	GCNGC	6 cut(s)	30, 130, 216, 439, 552, 690
Sau3AI	GATC	4 cut(s)	69, 140, 373, 613
SduI	GDGCHC	1 cut(s)	18
SfaNI	GCATC	3 cut(s)	493, 538, 674
Sfr274I	CTCGAG	1 cut(s)	286
SlaI	CTCGAG	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	2 cut(s)	192, 286
SmoI	CTYRAG	2 cut(s)	192, 286
Sse9I	AATT	4 cut(s)	58, 74, 101, 477
SseBI	AGGCCT	2 cut(s)	269, 484
SsiI	CCGC	1 cut(s)	250
SspMI	CTAG	4 cut(s)	386, 434, 642, 669
StuI	AGGCCT	2 cut(s)	269, 484
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	5 cut(s)	94, 151, 160, 233, 683
TaqI	TCGA	3 cut(s)	287, 427, 448
TasI	AATT	4 cut(s)	58, 74, 101, 477
TfiI	GAWTC	3 cut(s)	175, 292, 418
TscAI	CASTG	1 cut(s)	616
TseI	GCWGC	6 cut(s)	29, 129, 215, 438, 551, 689
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	1 cut(s)	616
XbaI	TCTAGA	1 cut(s)	668
XhoI	CTCGAG	1 cut(s)	286
XspI	CTAG	4 cut(s)	386, 434, 642, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.