Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001421

Physical Location & Seq

Genomic Coordinates Forward (+)

87849644 .. 87851609

Gene Structure 1966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG665500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGTGAGAGAAGAAGAACCGAAACAGAGCCCAAAAACTCAACCAAGAGAATCGAACCCAGTTGAGATCGGAAGTGGCCCAAGTGGGAACAGCTTGATGTTCAGTCCCAGATTCAAATCGGCGGCGGCCATGGCCGGTTGGGACGAAGAGTCTCTCCTAATCGCAAGCCTTGTCGTCGACGACACGCCGGAGCAAGATATTAAGCAGAAGAAACGATCTGTTTTCCGGTCCAAGACTCCACCCACCAATTCATCAAGAAGAAAGCGGAGAGTTCAGCGAAAGAGCCCGGTTTCGATCCCAGTGGCTGTTCTTGACCTTGATAGTGAAGAAGCTGCAAAAGAGGAGAGTGTGAAAGAGAAGGTAGAGCCTGAAATTGTTGTTGTGAATGAAGAAAAGAAAACAGGAGAATATGAGAAGATGGGTGAGAGCTCTGGTGCTTCGTGCTCAAGCTCGAATCTTCCTTGCATGGATAAGCTCAGGGATGAGCTTTCTTGTGCTATCTGCTTGGAGATTTGCTTTGAACCCAGTACAACTCCTTGCGGACACAGCTTCTGTAAGAAATGCTTGCGATCGGCTGCTGATAAATGTGGGAAGAGGTGCCCCAAATGCAGGCAGCTAATGAGCAATGGAAGATCTTGCACCGTGAACACGGTTCTATGGAACACGATTCAGCTTCTGTTTCCTCAAGAAGTTGAAGCAAGGAAAGCAGCTGGAGCCTTGAACAGTCGTGAAGAAGGTGAGCGGGAAATCCCTGATAAGGCCTTTAGTAGTAGCAACTCGAGGAATCAAAGCAGAAGAGTATCTGGCAGAGATGTGGCTGTAAGGAGAAGAAGGGTAGTGTTGAGCCAAGATGATGATGAGGACGATCCTGCACCACTAGCTATAAGGTTACAAATGAGAGAAGCTGAGAATCAAAATCGAGAACTAGGCAGCTTGGCTCGACCAGTAAGGATATCATCAGGCAGAGAAATTAGGCCTATAAGGAGGGTATCAAGCAGAGATGCAAATCCGACGAGTAGTAGAAGGGTGCCAAACCAACATGAGGATGCTGCATTAGCTCTGAGATTACAGAGGGAGGAGTTTATGGAGGCTTTTAGGGGAACCAGTGATCAATCAAGTGTCTCTCTTTCGTTGGCTAGAGCAAACCTGAGAGCCATGGCATCTAGAGCCACTAACCATGGTGCTGCAACCCGATTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2

Protein Analysis

400

Amino Acids

44.51

Weight (kDa)

9.15

Isoelectric Point (pI)

73.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4	PF00097	165 - 203	3.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	165 - 201	1.1e-06	RING-type zinc-finger
zf-C3HC4_2	PF13923	165 - 203	1e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27330 AT5G40720 AT5G40720 AT5G40720
fragaria_vesca	FvH4_6g52450 FvH4_6g52460 FvH4_6g52470 FvH4_6g52470
malus_domestica	MD09G1017800.v1.1 MD09G1017900.v1.1 MD17G1018600.v1.1
prunus_persica	Prupe.3G299100_v2.0.a1
pyrus_communis	pycom111g01480 pycom111g01490 pycom17g01530
rosa_chinensis	RchiOBHm_Chr2g0174091 RchiOBHm_Chr2g0174101 RchiOBHm_Chr2g0174111
rosa_laevigata	RLG00000021621 RLG00000022246 RLG00000022247
rosa_multiflora	Rmu_co8270263.1_g000001 Rmu_co8399791.1_g000001 Rmu_sc0003016.1_g000002 Rmu_sc0003016.1_g000003 Rmu_sc0003188.1_g000035 Rmu_sc0003188.1_g000036 Rmu_sc0012378.1_g000002 Rmu_sc0023199.1_g000001 Rmu_sc0023199.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078450 Rroxscaffold_2G00078460 Rroxscaffold_2G00084880
rosa_rugosa	Rorug02G0523200 Rorug02G0574700 Rorug02G0574700
rosa_samantha	Rh2AG589300 Rh2AG654100 Rh2AG654200 Rh2AG654300 Rh2BG601500 Rh2BG665300 Rh2BG665400 Rh2BG665500 Rh2CG572000 Rh2CG629600 Rh2CG629700 Rh2DG611900 Rh2DG612000 Rh2DG680000 Rh2DG680100
rosa_wichuraiana	Rw2G053700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	597, 1027
AccBSI	CCGCTC	1 cut(s)	742
AccI	GTMKAC	1 cut(s)	177
AciI	CCGC	5 cut(s)	122, 125, 265, 540, 742
AclWI	GGATC	2 cut(s)	289, 860
AcoI	YGGCCR	2 cut(s)	126, 132
AfaI	GTAC	1 cut(s)	529
AfiI	CCNNNNNNNGG	3 cut(s)	609, 757, 1042
AgsI	TTSAA	4 cut(s)	115, 521, 695, 721
AhdI	GACNNNNNGTC	1 cut(s)	148
Alw21I	GWGCWC	2 cut(s)	431, 446
Alw26I	GTCTC	2 cut(s)	156, 1126
AlwI	GGATC	2 cut(s)	289, 860
AlwNI	CAGNNNCTG	3 cut(s)	305, 552, 676
Ama87I	CYCGRG	1 cut(s)	778
AoxI	GGCC	5 cut(s)	76, 126, 132, 759, 974
ApeKI	GCWGC	7 cut(s)	332, 575, 613, 707, 930, 1049, 1184
AspS9I	GGNCC	2 cut(s)	77, 228
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	3 cut(s)	16, 434, 749
AvaI	CYCGRG	1 cut(s)	778
AvaII	GGWCC	1 cut(s)	228
BaeGI	GKGCMC	1 cut(s)	602
BanI	GGYRCC	2 cut(s)	597, 1027
BanII	GRGCYC	3 cut(s)	32, 287, 431
Bbv12I	GWGCWC	2 cut(s)	431, 446
BbvI	GCAGC	7 cut(s)	319, 562, 625, 719, 942, 1036, 1171
BccI	CCATC	1 cut(s)	412
BclI	TGATCA	1 cut(s)	1108
BcnI	CCSGG	1 cut(s)	287
BcoDI	GTCTC	2 cut(s)	156, 1126
BfaI	CTAG	4 cut(s)	878, 926, 1137, 1164
BglII	AGATCT	1 cut(s)	632
BisI	GCNGC	9 cut(s)	123, 126, 333, 576, 614, 708, 931, 1050, 1185
BlsI	GCNGC	9 cut(s)	124, 127, 334, 577, 615, 709, 932, 1051, 1186
Bme1390I	CCNGG	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	228
BmeRI	GACNNNNNGTC	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	778
BmgT120I	GGNCC	2 cut(s)	77, 228
BmiI	GGNNCC	4 cut(s)	599, 715, 1029, 1102
BmrFI	CCNGG	1 cut(s)	287
BmrI	ACTGGG	3 cut(s)	53, 293, 519
BmsI	GCATC	3 cut(s)	991, 1036, 1169
BmuI	ACTGGG	3 cut(s)	53, 293, 519
BpmI	CTGGAG	1 cut(s)	732
Bpu10I	CCTNAGC	1 cut(s)	476
BpuEI	CTTGAG	2 cut(s)	430, 669
BpuMI	CCSGG	1 cut(s)	287
BsaBI	GATNNNNATC	2 cut(s)	115, 1005
BsaJI	CCNNGG	3 cut(s)	129, 1155, 1177
BsaWI	WCCGGW	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	3 cut(s)	609, 757, 1042
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	5 cut(s)	59, 299, 525, 944, 1104
Bse3DI	GCAATG	1 cut(s)	631
Bse8I	GATNNNNATC	2 cut(s)	115, 1005
BseDI	CCNNGG	3 cut(s)	129, 1155, 1177
BseGI	GGATG	2 cut(s)	487, 1051
BseJI	GATNNNNATC	2 cut(s)	115, 1005
BseLI	CCNNNNNNNGG	3 cut(s)	609, 757, 1042
BseMI	GCAATG	1 cut(s)	631
BseMII	CTCAG	4 cut(s)	490, 897, 1052, 1139
BseNI	ACTGG	5 cut(s)	59, 299, 525, 944, 1104
BseRI	GAGGAG	2 cut(s)	356, 1091
BseSI	GKGCMC	1 cut(s)	602
BseXI	GCAGC	7 cut(s)	319, 562, 625, 719, 942, 1036, 1171
BsgI	GTGCAG	1 cut(s)	855
Bsh1285I	CGRYCG	1 cut(s)	572
BshFI	GGCC	5 cut(s)	78, 128, 134, 761, 976
BshNI	GGYRCC	2 cut(s)	597, 1027
BsiEI	CGRYCG	1 cut(s)	572
BsiHKAI	GWGCWC	2 cut(s)	431, 446
BsiHKCI	CYCGRG	1 cut(s)	778
BsiSI	CCGG	4 cut(s)	135, 188, 226, 287
BslFI	GGGAC	2 cut(s)	90, 155
BslI	CCNNNNNNNGG	3 cut(s)	609, 757, 1042
BsmAI	GTCTC	2 cut(s)	156, 1126
BsmFI	GGGAC	2 cut(s)	90, 155
BsnI	GGCC	5 cut(s)	78, 128, 134, 761, 976
BsoBI	CYCGRG	1 cut(s)	778
Bsp1286I	GDGCHC	5 cut(s)	32, 287, 431, 446, 602
Bsp143I	GATC	7 cut(s)	66, 215, 294, 569, 632, 865, 1108
Bsp19I	CCATGG	3 cut(s)	129, 1155, 1177
BspACI	CCGC	5 cut(s)	122, 125, 265, 540, 742
BspANI	GGCC	5 cut(s)	78, 128, 134, 761, 976
BspCNI	CTCAG	4 cut(s)	489, 898, 1053, 1140
BspLI	GGNNCC	4 cut(s)	599, 715, 1029, 1102
BspPI	GGATC	2 cut(s)	289, 860
BspT107I	GGYRCC	2 cut(s)	597, 1027
BsrBI	CCGCTC	1 cut(s)	742
BsrDI	GCAATG	1 cut(s)	631
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	5 cut(s)	59, 299, 525, 944, 1104
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	3 cut(s)	129, 1155, 1177
BssMI	GATC	7 cut(s)	66, 215, 294, 569, 632, 865, 1108
BssT1I	CCWWGG	3 cut(s)	129, 1155, 1177
Bst4CI	ACNGT	3 cut(s)	643, 652, 725
Bst6I	CTCTTC	3 cut(s)	141, 587, 790
BstC8I	GCNNGC	3 cut(s)	166, 566, 611
BstDEI	CTNAG	4 cut(s)	476, 906, 1061, 1148
BstDSI	CCRYGG	3 cut(s)	129, 1155, 1177
BstF5I	GGATG	2 cut(s)	487, 1051
BstKTI	GATC	7 cut(s)	69, 218, 297, 572, 635, 868, 1111
BstMAI	GTCTC	2 cut(s)	156, 1126
BstMBI	GATC	7 cut(s)	66, 215, 294, 569, 632, 865, 1108
BstMCI	CGRYCG	1 cut(s)	572
BstMWI	GCNNNNNNNGC	8 cut(s)	131, 546, 606, 704, 713, 878, 1055, 1166
BstSCI	CCNGG	1 cut(s)	285
BstSLI	GKGCMC	1 cut(s)	602
BstV1I	GCAGC	7 cut(s)	319, 562, 625, 719, 942, 1036, 1171
BstX2I	RGATCY	1 cut(s)	632
BstYI	RGATCY	1 cut(s)	632
BsuRI	GGCC	5 cut(s)	78, 128, 134, 761, 976
BtgI	CCRYGG	3 cut(s)	129, 1155, 1177
BtsCI	GGATG	2 cut(s)	487, 1051
BtsIMutI	CAGTG	2 cut(s)	306, 1111
Cac8I	GCNNGC	3 cut(s)	166, 566, 611
CaiI	CAGNNNCTG	3 cut(s)	305, 552, 676
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	2 cut(s)	77, 228
Csp6I	GTAC	1 cut(s)	528
CviAII	CATG	5 cut(s)	130, 466, 1040, 1156, 1178
CviQI	GTAC	1 cut(s)	528
DdeI	CTNAG	4 cut(s)	476, 906, 1061, 1148
DpnI	GATC	7 cut(s)	68, 217, 296, 571, 634, 867, 1110
DpnII	GATC	7 cut(s)	66, 215, 294, 569, 632, 865, 1108
DriI	GACNNNNNGTC	1 cut(s)	148
EaeI	YGGCCR	2 cut(s)	126, 132
Eam1104I	CTCTTC	3 cut(s)	141, 587, 790
Eam1105I	GACNNNNNGTC	1 cut(s)	148
EarI	CTCTTC	3 cut(s)	141, 587, 790
Ecl136II	GAGCTC	1 cut(s)	429
Eco130I	CCWWGG	3 cut(s)	129, 1155, 1177
Eco147I	AGGCCT	2 cut(s)	761, 976
Eco24I	GRGCYC	3 cut(s)	32, 287, 431
Eco32I	GATATC	1 cut(s)	954
Eco47I	GGWCC	1 cut(s)	228
Eco53kI	GAGCTC	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	778
EcoICRI	GAGCTC	1 cut(s)	429
EcoRV	GATATC	1 cut(s)	954
EcoT14I	CCWWGG	3 cut(s)	129, 1155, 1177
EcoT38I	GRGCYC	3 cut(s)	32, 287, 431
ErhI	CCWWGG	3 cut(s)	129, 1155, 1177
FaeI	CATG	5 cut(s)	133, 469, 1043, 1159, 1181
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FaqI	GGGAC	2 cut(s)	90, 155
FatI	CATG	5 cut(s)	129, 465, 1039, 1155, 1177
FauI	CCCGC	1 cut(s)	735
FbaI	TGATCA	1 cut(s)	1108
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	9 cut(s)	123, 126, 333, 576, 614, 708, 931, 1050, 1185
FokI	GGATG	2 cut(s)	494, 1058
FriOI	GRGCYC	3 cut(s)	32, 287, 431
Fsp4HI	GCNGC	9 cut(s)	123, 126, 333, 576, 614, 708, 931, 1050, 1185
FspBI	CTAG	4 cut(s)	878, 926, 1137, 1164
GluI	GCNGC	9 cut(s)	123, 126, 333, 576, 614, 708, 931, 1050, 1185
GsuI	CTGGAG	1 cut(s)	732
HaeIII	GGCC	5 cut(s)	78, 128, 134, 761, 976
HapII	CCGG	4 cut(s)	135, 188, 226, 287
Hin1II	CATG	5 cut(s)	133, 469, 1043, 1159, 1181
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	8 cut(s)	50, 111, 149, 235, 454, 667, 784, 910
HpaII	CCGG	4 cut(s)	135, 188, 226, 287
HphI	GGTGA	3 cut(s)	16, 434, 749
Hpy166II	GTNNAC	2 cut(s)	178, 646
Hpy188I	TCNGA	3 cut(s)	71, 1011, 1062
Hpy188III	TCNNGA	6 cut(s)	255, 311, 686, 728, 920, 1164
Hpy8I	GTNNAC	2 cut(s)	178, 646
Hpy99I	CGWCG	3 cut(s)	179, 182, 1015
HpyAV	CCTTC	4 cut(s)	352, 728, 825, 1017
HpyCH4III	ACNGT	3 cut(s)	643, 652, 725
HpyCH4V	TGCA	8 cut(s)	335, 465, 609, 639, 872, 1004, 1052, 1187
HpyF10VI	GCNNNNNNNGC	8 cut(s)	131, 546, 606, 704, 713, 878, 1055, 1166
HpyF3I	CTNAG	4 cut(s)	476, 906, 1061, 1148
Hsp92II	CATG	5 cut(s)	133, 469, 1043, 1159, 1181
Ksp22I	TGATCA	1 cut(s)	1108
Kzo9I	GATC	7 cut(s)	66, 215, 294, 569, 632, 865, 1108
LmnI	GCTCC	2 cut(s)	190, 713
Lsp1109I	GCAGC	7 cut(s)	319, 562, 625, 719, 942, 1036, 1171
LweI	GCATC	3 cut(s)	991, 1036, 1169
MaeI	CTAG	4 cut(s)	878, 926, 1137, 1164
MaeIII	GTNAC	1 cut(s)	888
MalI	GATC	7 cut(s)	68, 217, 296, 571, 634, 867, 1110
MbiI	CCGCTC	1 cut(s)	742
MboI	GATC	7 cut(s)	66, 215, 294, 569, 632, 865, 1108
MflI	RGATCY	1 cut(s)	632
MhlI	GDGCHC	5 cut(s)	32, 287, 431, 446, 602
MluCI	AATT	3 cut(s)	247, 372, 969
MlyI	GAGTC	2 cut(s)	158, 229
MmeI	TCCRAC	1 cut(s)	1034
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	1044
MspA1I	CMGCKG	1 cut(s)	710
MspI	CCGG	4 cut(s)	135, 188, 226, 287
MspR9I	CCNGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	8 cut(s)	131, 546, 606, 704, 713, 878, 1055, 1166
NciI	CCSGG	1 cut(s)	287
NcoI	CCATGG	3 cut(s)	129, 1155, 1177
NdeII	GATC	7 cut(s)	66, 215, 294, 569, 632, 865, 1108
NlaIII	CATG	5 cut(s)	133, 469, 1043, 1159, 1181
NlaIV	GGNNCC	4 cut(s)	599, 715, 1029, 1102
PaeR7I	CTCGAG	1 cut(s)	778
PceI	AGGCCT	2 cut(s)	761, 976
PfeI	GAWTC	6 cut(s)	50, 111, 454, 667, 784, 910
PkrI	GCNGC	9 cut(s)	124, 127, 334, 577, 615, 709, 932, 1051, 1186
Ple19I	CGATCG	1 cut(s)	572
PleI	GAGTC	2 cut(s)	157, 229
PpsI	GAGTC	2 cut(s)	157, 229
Psp124BI	GAGCTC	1 cut(s)	431
PspN4I	GGNNCC	4 cut(s)	599, 715, 1029, 1102
PspPI	GGNCC	2 cut(s)	77, 228
PspXI	VCTCGAGB	1 cut(s)	778
PstNI	CAGNNNCTG	3 cut(s)	305, 552, 676
PsuI	RGATCY	1 cut(s)	632
PvuI	CGATCG	1 cut(s)	572
PvuII	CAGCTG	1 cut(s)	710
RsaI	GTAC	1 cut(s)	529
RsaNI	GTAC	1 cut(s)	528
RseI	CAYNNNNRTG	1 cut(s)	1044
SacI	GAGCTC	1 cut(s)	431
SalI	GTCGAC	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	9 cut(s)	123, 126, 333, 576, 614, 708, 931, 1050, 1185
Sau3AI	GATC	7 cut(s)	66, 215, 294, 569, 632, 865, 1108
Sau96I	GGNCC	2 cut(s)	77, 228
SchI	GAGTC	2 cut(s)	158, 229
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	5 cut(s)	32, 287, 431, 446, 602
SfaNI	GCATC	3 cut(s)	991, 1036, 1169
Sfr274I	CTCGAG	1 cut(s)	778
SgrDI	CGTCGACG	1 cut(s)	176
SinI	GGWCC	1 cut(s)	228
SlaI	CTCGAG	1 cut(s)	778
SmiMI	CAYNNNNRTG	1 cut(s)	1044
SmlI	CTYRAG	3 cut(s)	445, 684, 778
SmoI	CTYRAG	3 cut(s)	445, 684, 778
Sse9I	AATT	3 cut(s)	247, 372, 969
SseBI	AGGCCT	2 cut(s)	761, 976
SsiI	CCGC	5 cut(s)	122, 125, 265, 540, 742
SspMI	CTAG	4 cut(s)	878, 926, 1137, 1164
SstI	GAGCTC	1 cut(s)	431
StuI	AGGCCT	2 cut(s)	761, 976
StyD4I	CCNGG	1 cut(s)	285
StyI	CCWWGG	3 cut(s)	129, 1155, 1177
TaaI	ACNGT	3 cut(s)	643, 652, 725
TaqI	TCGA	7 cut(s)	53, 177, 293, 452, 779, 919, 940
TasI	AATT	3 cut(s)	247, 372, 969
TatI	WGTACW	1 cut(s)	527
TauI	GCSGC	2 cut(s)	125, 128
TfiI	GAWTC	6 cut(s)	50, 111, 454, 667, 784, 910
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	2 cut(s)	306, 1111
TseI	GCWGC	7 cut(s)	332, 575, 613, 707, 930, 1049, 1184
TspDTI	ATGAA	2 cut(s)	240, 402
TspRI	CASTG	2 cut(s)	306, 1111
VpaK11BI	GGWCC	1 cut(s)	228
XbaI	TCTAGA	1 cut(s)	1163
XhoI	CTCGAG	1 cut(s)	778
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	4 cut(s)	878, 926, 1137, 1164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.