Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003016.1

Orthogroup ID

OG0001421

Physical Location & Seq

Genomic Coordinates Forward (+)

3991 .. 4551

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003016.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atggtgagagaagaagaaccaaaacagagcccaaaaactcaaccaagagaatcgaacccagtcgagatcggaagtggcccaagtgggaacagcttgatgttcagtcccatattcaaatcgacggcggccatggctggttgggatgaagagtctctcctgatcgcaagccttgttgtcgacgacacgccggagcaagatataaagcagaagaaacgatctgttttcaggtccaagactccacacaccaactcatcgagaagaaaacggagagttgagcaaaagagcccggtttcgatcccagtagctgttcttgaccttgataatgaagaaactacaaaagaggagagtgtgaaagagaaggtagagcctgaaattgttgttgtgaatgaagaaaagaatataggagaagatgagaagatgggtgagagctctggtgcttcgtgctcaagctcgaatcttccttgcatggataagcttagggatgagctttcttgtgctatctgcttggagatctgctttgaacccggccagtaccactccttgtggacacagtttctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2

Protein Analysis

186

Amino Acids

20.77

Weight (kDa)

4.92

Isoelectric Point (pI)

77.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27330 AT5G40720 AT5G40720 AT5G40720
fragaria_vesca	FvH4_6g52450 FvH4_6g52460 FvH4_6g52470 FvH4_6g52470
malus_domestica	MD09G1017800.v1.1 MD09G1017900.v1.1 MD17G1018600.v1.1
prunus_persica	Prupe.3G299100_v2.0.a1
pyrus_communis	pycom111g01480 pycom111g01490 pycom17g01530
rosa_chinensis	RchiOBHm_Chr2g0174091 RchiOBHm_Chr2g0174101 RchiOBHm_Chr2g0174111
rosa_laevigata	RLG00000021621 RLG00000022246 RLG00000022247
rosa_multiflora	Rmu_co8270263.1_g000001 Rmu_co8399791.1_g000001 Rmu_sc0003016.1_g000002 Rmu_sc0003016.1_g000003 Rmu_sc0003188.1_g000035 Rmu_sc0003188.1_g000036 Rmu_sc0012378.1_g000002 Rmu_sc0023199.1_g000001 Rmu_sc0023199.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078450 Rroxscaffold_2G00078460 Rroxscaffold_2G00084880
rosa_rugosa	Rorug02G0523200 Rorug02G0574700 Rorug02G0574700
rosa_samantha	Rh2AG589300 Rh2AG654100 Rh2AG654200 Rh2AG654300 Rh2BG601500 Rh2BG665300 Rh2BG665400 Rh2BG665500 Rh2CG572000 Rh2CG629600 Rh2CG629700 Rh2DG611900 Rh2DG612000 Rh2DG680000 Rh2DG680100
rosa_wichuraiana	Rw2G053700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	177
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	1 cut(s)	289
AcoI	YGGCCR	2 cut(s)	126, 526
AfaI	GTAC	1 cut(s)	533
AgsI	TTSAA	2 cut(s)	115, 521
AluBI	AGCT	6 cut(s)	93, 305, 429, 450, 475, 487
AluI	AGCT	6 cut(s)	93, 305, 429, 450, 475, 487
Alw21I	GWGCWC	2 cut(s)	431, 446
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	1 cut(s)	289
AlwNI	CAGNNNCTG	2 cut(s)	305, 556
AoxI	GGCC	3 cut(s)	76, 126, 526
AspS9I	GGNCC	2 cut(s)	77, 228
AsuC2I	CCSGG	2 cut(s)	287, 525
AsuHPI	GGTGA	2 cut(s)	16, 434
AvaII	GGWCC	1 cut(s)	228
BanII	GRGCYC	3 cut(s)	32, 287, 431
Bbv12I	GWGCWC	2 cut(s)	431, 446
BccI	CCATC	1 cut(s)	412
BceAI	ACGGC	1 cut(s)	138
BcnI	CCSGG	2 cut(s)	287, 525
BcoDI	GTCTC	1 cut(s)	156
BglII	AGATCT	1 cut(s)	510
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	2 cut(s)	287, 525
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	2 cut(s)	77, 228
BmrFI	CCNGG	2 cut(s)	287, 525
BmrI	ACTGGG	2 cut(s)	53, 293
BmuI	ACTGGG	2 cut(s)	53, 293
Bpu10I	CCTNAGC	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	430
BpuMI	CCSGG	2 cut(s)	287, 525
BsaJI	CCNNGG	1 cut(s)	129
Bse1I	ACTGG	3 cut(s)	59, 299, 529
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	148, 487
BseNI	ACTGG	3 cut(s)	59, 299, 529
BseRI	GAGGAG	1 cut(s)	356
BshFI	GGCC	3 cut(s)	78, 128, 528
BsiHKAI	GWGCWC	2 cut(s)	431, 446
BsiSI	CCGG	3 cut(s)	188, 287, 525
BslFI	GGGAC	1 cut(s)	90
BsmAI	GTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	90
BsnI	GGCC	3 cut(s)	78, 128, 528
Bsp1286I	GDGCHC	4 cut(s)	32, 287, 431, 446
Bsp143I	GATC	5 cut(s)	66, 159, 215, 294, 510
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	3 cut(s)	78, 128, 528
BspPI	GGATC	1 cut(s)	289
BsrI	ACTGG	3 cut(s)	59, 299, 529
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	5 cut(s)	66, 159, 215, 294, 510
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	552
Bst6I	CTCTTC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	476
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	148, 487
BstKTI	GATC	5 cut(s)	69, 162, 218, 297, 513
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	5 cut(s)	66, 159, 215, 294, 510
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstSCI	CCNGG	2 cut(s)	285, 523
BstX2I	RGATCY	1 cut(s)	510
BstYI	RGATCY	1 cut(s)	510
BsuRI	GGCC	3 cut(s)	78, 128, 528
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	148, 487
Cac8I	GCNNGC	1 cut(s)	166
CaiI	CAGNNNCTG	2 cut(s)	305, 556
Cfr13I	GGNCC	2 cut(s)	77, 228
Csp6I	GTAC	1 cut(s)	532
CviAII	CATG	2 cut(s)	130, 466
CviQI	GTAC	1 cut(s)	532
DdeI	CTNAG	1 cut(s)	476
DpnI	GATC	5 cut(s)	68, 161, 217, 296, 512
DpnII	GATC	5 cut(s)	66, 159, 215, 294, 510
EaeI	YGGCCR	2 cut(s)	126, 526
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	129
Eco24I	GRGCYC	3 cut(s)	32, 287, 431
Eco47I	GGWCC	1 cut(s)	228
Eco53kI	GAGCTC	1 cut(s)	429
EcoICRI	GAGCTC	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	3 cut(s)	32, 287, 431
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	2 cut(s)	133, 469
FaiI	YATR	5 cut(s)	110, 131, 200, 401, 467
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	2 cut(s)	129, 465
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	2 cut(s)	155, 494
FriOI	GRGCYC	3 cut(s)	32, 287, 431
Fsp4HI	GCNGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	126
HaeIII	GGCC	3 cut(s)	78, 128, 528
HapII	CCGG	3 cut(s)	188, 287, 525
Hin1II	CATG	2 cut(s)	133, 469
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	4 cut(s)	50, 149, 235, 454
HpaII	CCGG	3 cut(s)	188, 287, 525
HphI	GGTGA	2 cut(s)	16, 434
Hpy166II	GTNNAC	2 cut(s)	178, 546
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	4 cut(s)	64, 157, 255, 311
Hpy8I	GTNNAC	2 cut(s)	178, 546
Hpy99I	CGWCG	2 cut(s)	124, 182
HpyAV	CCTTC	1 cut(s)	352
HpyCH4III	ACNGT	1 cut(s)	552
HpyCH4V	TGCA	1 cut(s)	465
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	476
Hsp92II	CATG	2 cut(s)	133, 469
Kzo9I	GATC	5 cut(s)	66, 159, 215, 294, 510
LmnI	GCTCC	1 cut(s)	190
MalI	GATC	5 cut(s)	68, 161, 217, 296, 512
MboI	GATC	5 cut(s)	66, 159, 215, 294, 510
MflI	RGATCY	1 cut(s)	510
MhlI	GDGCHC	4 cut(s)	32, 287, 431, 446
MluCI	AATT	1 cut(s)	372
MlyI	GAGTC	2 cut(s)	158, 229
MnlI	CCTC	1 cut(s)	334
MspI	CCGG	3 cut(s)	188, 287, 525
MspR9I	CCNGG	2 cut(s)	287, 525
MwoI	GCNNNNNNNGC	1 cut(s)	131
NciI	CCSGG	2 cut(s)	287, 525
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	5 cut(s)	66, 159, 215, 294, 510
NlaIII	CATG	2 cut(s)	133, 469
PfeI	GAWTC	2 cut(s)	50, 454
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	2 cut(s)	157, 229
PpsI	GAGTC	2 cut(s)	157, 229
Psp124BI	GAGCTC	1 cut(s)	431
PspPI	GGNCC	2 cut(s)	77, 228
PstNI	CAGNNNCTG	2 cut(s)	305, 556
PsuI	RGATCY	1 cut(s)	510
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
SacI	GAGCTC	1 cut(s)	431
SalI	GTCGAC	1 cut(s)	176
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	5 cut(s)	66, 159, 215, 294, 510
Sau96I	GGNCC	2 cut(s)	77, 228
SchI	GAGTC	2 cut(s)	158, 229
ScrFI	CCNGG	2 cut(s)	287, 525
SduI	GDGCHC	4 cut(s)	32, 287, 431, 446
SetI	ASST	9 cut(s)	95, 230, 307, 318, 363, 431, 452, 477, 489
SinI	GGWCC	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
Sse9I	AATT	1 cut(s)	372
SsiI	CCGC	1 cut(s)	125
SstI	GAGCTC	1 cut(s)	431
StyD4I	CCNGG	2 cut(s)	285, 523
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	552
TaqI	TCGA	7 cut(s)	53, 63, 119, 177, 254, 293, 452
TasI	AATT	1 cut(s)	372
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	2 cut(s)	50, 454
TspDTI	ATGAA	3 cut(s)	159, 339, 402
TspGWI	ACGGA	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.