Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001421

Physical Location & Seq

Genomic Coordinates Reverse (-)

82165446 .. 82166006

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG601500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGTGAGAGAAGAAGAACCAAAACAGAGCCCAAAAACTCAACCAAGAGAATCGAACCCAGTCGAGATCGGAAGTGGCCCAAGTGGGAACAGCTTGATGTTCAGTCCCATATTCAAATCGACGGCGGCCATGGCTGGTTGGGATGAAGAGTCTCTCCTGATCGCAAGCCTTGTTGTCGACGACACGCCGGAGCAAGATATAAAGCAGAAGAAACGATCTGTTTTCAGGTCCAAGACTCCACACACCAACTCATCGAGAAGAAAACGGAGAGTTGAGCAAAAGAGCCCGGTTTGGATCCCAGTAGCTGTTCTTGACCTTGATAATGAAGAAACTACAAAAGTGGAGAGTGTGAAAGAGAAGGTAGAGCCTGAAATTGTTGTTGTGAATGAGAAAAAGAATATAGGAGAAGATGAGAAGATGGGTGAGAGCTCTGGTGCTTCGTGCTCAAGCTTGAATCTTCCTTGCATGGATAAGCTTAGGGATGAGCTTTCTTGTGCTATCTGCTTGGAGATCTGCTTTGAACCCGGCCAGTACCACTCCTTGTGGACACAGTTCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2

Protein Analysis

186

Amino Acids

20.87

Weight (kDa)

5.16

Isoelectric Point (pI)

72.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27330 AT5G40720 AT5G40720 AT5G40720
fragaria_vesca	FvH4_6g52450 FvH4_6g52460 FvH4_6g52470 FvH4_6g52470
malus_domestica	MD09G1017800.v1.1 MD09G1017900.v1.1 MD17G1018600.v1.1
prunus_persica	Prupe.3G299100_v2.0.a1
pyrus_communis	pycom111g01480 pycom111g01490 pycom17g01530
rosa_chinensis	RchiOBHm_Chr2g0174091 RchiOBHm_Chr2g0174101 RchiOBHm_Chr2g0174111
rosa_laevigata	RLG00000021621 RLG00000022246 RLG00000022247
rosa_multiflora	Rmu_co8270263.1_g000001 Rmu_co8399791.1_g000001 Rmu_sc0003016.1_g000002 Rmu_sc0003016.1_g000003 Rmu_sc0003188.1_g000035 Rmu_sc0003188.1_g000036 Rmu_sc0012378.1_g000002 Rmu_sc0023199.1_g000001 Rmu_sc0023199.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078450 Rroxscaffold_2G00078460 Rroxscaffold_2G00084880
rosa_rugosa	Rorug02G0523200 Rorug02G0574700 Rorug02G0574700
rosa_samantha	Rh2AG589300 Rh2AG654100 Rh2AG654200 Rh2AG654300 Rh2BG601500 Rh2BG665300 Rh2BG665400 Rh2BG665500 Rh2CG572000 Rh2CG629600 Rh2CG629700 Rh2DG611900 Rh2DG612000 Rh2DG680000 Rh2DG680100
rosa_wichuraiana	Rw2G053700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	177
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	2 cut(s)	289, 302
AcoI	YGGCCR	2 cut(s)	126, 526
AfaI	GTAC	1 cut(s)	533
AgsI	TTSAA	3 cut(s)	115, 454, 521
AluBI	AGCT	6 cut(s)	93, 305, 429, 450, 475, 487
AluI	AGCT	6 cut(s)	93, 305, 429, 450, 475, 487
Alw21I	GWGCWC	2 cut(s)	431, 446
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	2 cut(s)	289, 302
AlwNI	CAGNNNCTG	2 cut(s)	305, 556
AoxI	GGCC	3 cut(s)	76, 126, 526
AspS9I	GGNCC	2 cut(s)	77, 228
AsuC2I	CCSGG	2 cut(s)	287, 525
AsuHPI	GGTGA	2 cut(s)	16, 434
AvaII	GGWCC	1 cut(s)	228
BamHI	GGATCC	1 cut(s)	294
BanII	GRGCYC	3 cut(s)	32, 287, 431
Bbv12I	GWGCWC	2 cut(s)	431, 446
BccI	CCATC	1 cut(s)	412
BceAI	ACGGC	1 cut(s)	138
BcnI	CCSGG	2 cut(s)	287, 525
BcoDI	GTCTC	1 cut(s)	156
BglII	AGATCT	1 cut(s)	510
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	2 cut(s)	287, 525
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	2 cut(s)	77, 228
BmiI	GGNNCC	1 cut(s)	296
BmrFI	CCNGG	2 cut(s)	287, 525
BmrI	ACTGGG	2 cut(s)	53, 293
BmuI	ACTGGG	2 cut(s)	53, 293
Bpu10I	CCTNAGC	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	430
BpuMI	CCSGG	2 cut(s)	287, 525
BsaJI	CCNNGG	1 cut(s)	129
Bse1I	ACTGG	3 cut(s)	59, 299, 529
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	148, 487
BseNI	ACTGG	3 cut(s)	59, 299, 529
BshFI	GGCC	3 cut(s)	78, 128, 528
BsiHKAI	GWGCWC	2 cut(s)	431, 446
BsiSI	CCGG	3 cut(s)	188, 287, 525
BslFI	GGGAC	1 cut(s)	90
BsmAI	GTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	90
BsnI	GGCC	3 cut(s)	78, 128, 528
Bsp1286I	GDGCHC	4 cut(s)	32, 287, 431, 446
Bsp143I	GATC	5 cut(s)	66, 159, 215, 294, 510
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	3 cut(s)	78, 128, 528
BspLI	GGNNCC	1 cut(s)	296
BspPI	GGATC	2 cut(s)	289, 302
BsrI	ACTGG	3 cut(s)	59, 299, 529
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	5 cut(s)	66, 159, 215, 294, 510
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	552
Bst6I	CTCTTC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	476
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	148, 487
BstKTI	GATC	5 cut(s)	69, 162, 218, 297, 513
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	5 cut(s)	66, 159, 215, 294, 510
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstSCI	CCNGG	2 cut(s)	285, 523
BstX2I	RGATCY	2 cut(s)	294, 510
BstYI	RGATCY	2 cut(s)	294, 510
BsuRI	GGCC	3 cut(s)	78, 128, 528
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	148, 487
Cac8I	GCNNGC	1 cut(s)	166
CaiI	CAGNNNCTG	2 cut(s)	305, 556
Cfr13I	GGNCC	2 cut(s)	77, 228
Csp6I	GTAC	1 cut(s)	532
CviAII	CATG	2 cut(s)	130, 466
CviQI	GTAC	1 cut(s)	532
DdeI	CTNAG	1 cut(s)	476
DpnI	GATC	5 cut(s)	68, 161, 217, 296, 512
DpnII	GATC	5 cut(s)	66, 159, 215, 294, 510
EaeI	YGGCCR	2 cut(s)	126, 526
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	129
Eco24I	GRGCYC	3 cut(s)	32, 287, 431
Eco47I	GGWCC	1 cut(s)	228
Eco53kI	GAGCTC	1 cut(s)	429
EcoICRI	GAGCTC	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	3 cut(s)	32, 287, 431
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	2 cut(s)	133, 469
FaiI	YATR	5 cut(s)	110, 131, 200, 401, 467
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	2 cut(s)	129, 465
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	2 cut(s)	155, 494
FriOI	GRGCYC	3 cut(s)	32, 287, 431
Fsp4HI	GCNGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	126
HaeIII	GGCC	3 cut(s)	78, 128, 528
HapII	CCGG	3 cut(s)	188, 287, 525
Hin1II	CATG	2 cut(s)	133, 469
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	2 cut(s)	448, 473
HinfI	GANTC	4 cut(s)	50, 149, 235, 454
HpaII	CCGG	3 cut(s)	188, 287, 525
HphI	GGTGA	2 cut(s)	16, 434
Hpy166II	GTNNAC	2 cut(s)	178, 546
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	4 cut(s)	64, 157, 255, 311
Hpy8I	GTNNAC	2 cut(s)	178, 546
Hpy99I	CGWCG	2 cut(s)	124, 182
HpyAV	CCTTC	1 cut(s)	352
HpyCH4III	ACNGT	1 cut(s)	552
HpyCH4V	TGCA	1 cut(s)	465
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	476
Hsp92II	CATG	2 cut(s)	133, 469
Kzo9I	GATC	5 cut(s)	66, 159, 215, 294, 510
LmnI	GCTCC	1 cut(s)	190
MalI	GATC	5 cut(s)	68, 161, 217, 296, 512
MboI	GATC	5 cut(s)	66, 159, 215, 294, 510
MboII	GAAGA	9 cut(s)	23, 26, 158, 220, 270, 338, 419, 427, 449
MflI	RGATCY	2 cut(s)	294, 510
MhlI	GDGCHC	4 cut(s)	32, 287, 431, 446
MluCI	AATT	1 cut(s)	372
MlyI	GAGTC	2 cut(s)	158, 229
MspI	CCGG	3 cut(s)	188, 287, 525
MspR9I	CCNGG	2 cut(s)	287, 525
MwoI	GCNNNNNNNGC	1 cut(s)	131
NciI	CCSGG	2 cut(s)	287, 525
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	5 cut(s)	66, 159, 215, 294, 510
NlaIII	CATG	2 cut(s)	133, 469
NlaIV	GGNNCC	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	50, 454
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	2 cut(s)	157, 229
PpsI	GAGTC	2 cut(s)	157, 229
Psp124BI	GAGCTC	1 cut(s)	431
PspN4I	GGNNCC	1 cut(s)	296
PspPI	GGNCC	2 cut(s)	77, 228
PstNI	CAGNNNCTG	2 cut(s)	305, 556
PsuI	RGATCY	2 cut(s)	294, 510
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
SacI	GAGCTC	1 cut(s)	431
SalI	GTCGAC	1 cut(s)	176
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	5 cut(s)	66, 159, 215, 294, 510
Sau96I	GGNCC	2 cut(s)	77, 228
SchI	GAGTC	2 cut(s)	158, 229
ScrFI	CCNGG	2 cut(s)	287, 525
SduI	GDGCHC	4 cut(s)	32, 287, 431, 446
SetI	ASST	9 cut(s)	95, 230, 307, 318, 363, 431, 452, 477, 489
SinI	GGWCC	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
Sse9I	AATT	1 cut(s)	372
SsiI	CCGC	1 cut(s)	125
SstI	GAGCTC	1 cut(s)	431
StyD4I	CCNGG	2 cut(s)	285, 523
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	552
TaqI	TCGA	5 cut(s)	53, 63, 119, 177, 254
TasI	AATT	1 cut(s)	372
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	2 cut(s)	50, 454
TspDTI	ATGAA	2 cut(s)	159, 339
TspGWI	ACGGA	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.