Rh2BG665400

Glycosyl transferase family 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001421
Physical Location & Seq
Forward (+)
87848037 .. 87848489
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG665400.1

Sequence Viewer

Length: 453 bp
ATGCCTTCGGGGTTATTATTACATGACGTGCTGCGCAACCAGTCCAAGTATGGTTATGGTGAGGTTCAGGCTTGGTGCTATAGTTTTGGGCAGTCGGGCCTCAAGAGTGTCCCGATTCAGGGCGTGACGGTAGGGTACACTTGTCGCGTGGCGGCCCCGTTGGATTCGACATTGATGAATGTGGTGCACCATTTCAAACTTAGAAATGGTTACGAGGCAGTGAAAGCGGATAGGGGAGTGTGGGTTATCAATCACTACAAGTACCAAGTGTGGGAGGTTTTTAAGGAGAAGTTCTATAGGAGAGTGGCGACCTATGTGGCGGACTGGCAGGAGGAGCAGAATGTGGGTTCCAAGGATCGAGCCCCGGGATTGGGGAGAAGGCGGTGGAGCCACCGGATTGGCCGGAGAGGTTTTGCGAGGTTAATGACACTGGACTTAGGAACCGGGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92 zf-C3HC4

Protein Analysis

150

Amino Acids

17.21

Weight (kDa)

9.78

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 35
AccII CGCG 1 cut(s) 147
AciI CCGC 4 cut(s) 152, 227, 320, 382
AclWI GGATC 1 cut(s) 363
AcoI YGGCCR 1 cut(s) 400
AfaI GTAC 2 cut(s) 137, 263
AfiI CCNNNNNNNGG 5 cut(s) 118, 119, 271, 370, 371
AgsI TTSAA 1 cut(s) 196
AjiI CACGTC 1 cut(s) 28
Alw21I GWGCWC 1 cut(s) 189
Alw44I GTGCAC 1 cut(s) 185
AlwI GGATC 1 cut(s) 363
Ama87I CYCGRG 1 cut(s) 364
AoxI GGCC 3 cut(s) 97, 153, 400
ApaLI GTGCAC 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 31
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 2 cut(s) 97, 154
AsuC2I CCSGG 3 cut(s) 365, 366, 445
AsuHPI GGTGA 1 cut(s) 71
AvaI CYCGRG 1 cut(s) 364
BaeGI GKGCMC 1 cut(s) 189
BaeI ACNNNNGTAYC 2 cut(s) 127, 160
BanII GRGCYC 1 cut(s) 364
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 18
BcnI CCSGG 3 cut(s) 365, 366, 445
BfmI CTRYAG 2 cut(s) 79, 295
BisI GCNGC 2 cut(s) 32, 153
BlsI GCNGC 2 cut(s) 33, 154
Bme1390I CCNGG 3 cut(s) 365, 366, 445
BmeT110I CYCGRG 1 cut(s) 364
BmgBI CACGTC 1 cut(s) 28
BmgT120I GGNCC 2 cut(s) 97, 154
BmiI GGNNCC 4 cut(s) 156, 349, 389, 442
BmrFI CCNGG 3 cut(s) 365, 366, 445
BpuEI CTTGAG 1 cut(s) 86
BpuMI CCSGG 3 cut(s) 365, 366, 445
BsaJI CCNNGG 3 cut(s) 351, 363, 364
BsaWI WCCGGW 1 cut(s) 393
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 5 cut(s) 118, 119, 271, 370, 371
Bse1I ACTGG 3 cut(s) 40, 329, 435
BseDI CCNNGG 3 cut(s) 351, 363, 364
BseLI CCNNNNNNNGG 5 cut(s) 118, 119, 271, 370, 371
BseNI ACTGG 3 cut(s) 40, 329, 435
BseRI GAGGAG 1 cut(s) 347
BseSI GKGCMC 1 cut(s) 189
BseXI GCAGC 1 cut(s) 18
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 3 cut(s) 99, 155, 402
BsiHKAI GWGCWC 1 cut(s) 189
BsiHKCI CYCGRG 1 cut(s) 364
BsiSI CCGG 4 cut(s) 365, 394, 403, 444
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 5 cut(s) 118, 119, 271, 370, 371
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 3 cut(s) 99, 155, 402
BsoBI CYCGRG 1 cut(s) 364
Bsp1286I GDGCHC 2 cut(s) 189, 364
Bsp143I GATC 1 cut(s) 355
BspACI CCGC 4 cut(s) 152, 227, 320, 382
BspANI GGCC 3 cut(s) 99, 155, 402
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 4 cut(s) 156, 349, 389, 442
BspPI GGATC 1 cut(s) 363
BsrI ACTGG 3 cut(s) 40, 329, 435
BssECI CCNNGG 3 cut(s) 351, 363, 364
BssMI GATC 1 cut(s) 355
BssT1I CCWWGG 1 cut(s) 351
Bst4CI ACNGT 1 cut(s) 130
BstDEI CTNAG 2 cut(s) 200, 436
BstFNI CGCG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 1 cut(s) 358
BstMBI GATC 1 cut(s) 355
BstMWI GCNNNNNNNGC 2 cut(s) 224, 334
BstSCI CCNGG 3 cut(s) 363, 364, 443
BstSFI CTRYAG 2 cut(s) 79, 295
BstSLI GKGCMC 1 cut(s) 189
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 18
BstXI CCANNNNNNTGG 1 cut(s) 398
BsuRI GGCC 3 cut(s) 99, 155, 402
BtrI CACGTC 1 cut(s) 28
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 225, 428
CfoI GCGC 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 97, 154
Cfr9I CCCGGG 1 cut(s) 364
Csp6I GTAC 2 cut(s) 136, 262
CviAII CATG 1 cut(s) 23
CviJI RGCY 6 cut(s) 71, 99, 155, 362, 390, 402
CviKI_1 RGCY 6 cut(s) 71, 99, 155, 362, 390, 402
CviQI GTAC 2 cut(s) 136, 262
DdeI CTNAG 2 cut(s) 200, 436
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 400
EciI GGCGGA 1 cut(s) 335
Eco130I CCWWGG 1 cut(s) 351
Eco24I GRGCYC 1 cut(s) 364
Eco88I CYCGRG 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 1 cut(s) 26
FaiI YATR 6 cut(s) 24, 51, 57, 81, 297, 315
FaqI GGGAC 1 cut(s) 95
FatI CATG 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 32, 153
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 2 cut(s) 32, 153
FspI TGCGCA 1 cut(s) 35
GlaI GCGC 1 cut(s) 35
GluI GCNGC 2 cut(s) 32, 153
HaeIII GGCC 3 cut(s) 99, 155, 402
HapII CCGG 4 cut(s) 365, 394, 403, 444
HhaI GCGC 1 cut(s) 36
Hin1II CATG 1 cut(s) 26
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HinfI GANTC 2 cut(s) 115, 164
HpaII CCGG 4 cut(s) 365, 394, 403, 444
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 138, 187
Hpy188III TCNNGA 2 cut(s) 103, 112
Hpy8I GTNNAC 2 cut(s) 138, 187
HpyAV CCTTC 2 cut(s) 15, 372
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 1 cut(s) 187
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 334
HpyF3I CTNAG 2 cut(s) 200, 436
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 1 cut(s) 26
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 1 cut(s) 355
LmnI GCTCC 2 cut(s) 334, 387
LpnPI CCDG 9 cut(s) 53, 53, 104, 310, 314, 378, 407, 416, 416
Lsp1109I GCAGC 1 cut(s) 18
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 2 cut(s) 124, 209
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MhlI GDGCHC 2 cut(s) 189, 364
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 7 cut(s) 55, 110, 208, 268, 325, 401, 411
MseI TTAA 2 cut(s) 282, 422
MspI CCGG 4 cut(s) 365, 394, 403, 444
MspR9I CCNGG 3 cut(s) 365, 366, 445
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 224, 334
NciI CCSGG 3 cut(s) 365, 366, 445
NdeII GATC 1 cut(s) 355
NlaIII CATG 1 cut(s) 26
NlaIV GGNNCC 4 cut(s) 156, 349, 389, 442
NmuCI GTSAC 1 cut(s) 124
NsbI TGCGCA 1 cut(s) 35
PfeI GAWTC 2 cut(s) 115, 164
PkrI GCNGC 2 cut(s) 33, 154
PspN4I GGNNCC 4 cut(s) 156, 349, 389, 442
PspPI GGNCC 2 cut(s) 97, 154
RsaI GTAC 2 cut(s) 137, 263
RsaNI GTAC 2 cut(s) 136, 262
SaqAI TTAA 2 cut(s) 282, 422
SatI GCNGC 2 cut(s) 32, 153
Sau3AI GATC 1 cut(s) 355
Sau96I GGNCC 2 cut(s) 97, 154
ScrFI CCNGG 3 cut(s) 365, 366, 445
SduI GDGCHC 2 cut(s) 189, 364
SetI ASST 6 cut(s) 30, 66, 279, 314, 412, 422
SfcI CTRYAG 2 cut(s) 79, 295
SmaI CCCGGG 1 cut(s) 366
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
SsiI CCGC 4 cut(s) 152, 227, 320, 382
StyD4I CCNGG 3 cut(s) 363, 364, 443
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 1 cut(s) 30
TaqI TCGA 2 cut(s) 167, 358
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 2 cut(s) 115, 164
Tru1I TTAA 2 cut(s) 282, 422
Tru9I TTAA 2 cut(s) 282, 422
TscAI CASTG 2 cut(s) 225, 435
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 1 cut(s) 191
TspMI CCCGGG 1 cut(s) 364
TspRI CASTG 2 cut(s) 225, 435
VneI GTGCAC 1 cut(s) 185
XcmI CCANNNNNNNNNTGG 1 cut(s) 47
XmaI CCCGGG 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.