Rroxscaffold_2G00078450

Glycosyl transferase family 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001421
Physical Location & Seq
Reverse (-)
1748760 .. 1750747
1988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00078450.1

Sequence Viewer

Length: 1203 bp
ATGGTGAGAGAAGAAGAAACGAAACAGAGCCCAAAAACTCAACCAAGAGAATCGAACCCAGTTGAGATCGGAAGTGGCCCAAGTGGGAACAGCTTGATGTTCAGTCCCAGATTCAAATCGGCGGCGGCCATGGCTGGTTGGGACGAAGAGTCTCTCCTGATCGCAAGCCTTGTCGTCGACGACACGCCGGAGCAAGATATTAAGCAGAAGAAACGATCTGTTTTCCGGTCCAAGACTCCACCCACCAATTCATCAAGAAGAAAGCGGAGAGTTCAGCGAAAGAGCCCGGTTTCGATCCCGGTGGCTGTTCTTGACCTTGATAGTGAAGAAACTACAAAAAAGGAGAGTGTGAAAGAGAAGGTAGAGCCTGAAATTGTTGTTGTGAATGAAGAAAAGAAAACAGGAGAATATGAGAAGATGGGTGAGAGCTCTGGTGCTTCGTGCTCAAGCTCGAATCTTCCTTGCATGGATAAGCTCAGGGATGAGCTTTCTTGTGCTATCTGCTTGGAGATTTGCTTTGAACCCAGTACCACTCCTTGTGGACACAGCTTCTGTAAGAAATGCTTGCGATCGGCTGCAGATAAATGTGGGAAGAGGTGCCCCAAATGCAGGCAGCTAATGAGCAATGGAAGATCTTGCACTGTGAACACGGTTCTATGGAATACAATTCAGCTTCTGTTTCCGCAAGAAGTTGAAGCAAGGAAAGCAGCTGGAGCCTTGAATAGTCGTGAAGAAGCTGGGCGAGAAATCCCCGATAAGGCCTTTAGTGGTAGCAACTCAAGGAATCAAAGTAGAAGGGTATCTGGCAGAGATGTGGCTGTAAGGAGAAGAAGGGTAGTGATAAGCCAAGATGATGATGAGGACGATCCTGCACCACTAGCTATAAGGTTACAAATGAGAGAAGCTGAGAATCAAAATCGAGAACTAGGCAGCTTGGCTCGACCAGTAAGGATATCATCAGGCAGAGAAATTAGGCCTATAAGGAGGGTATCAAGCAGAGATGCAAACCCGACGAGTAGTAGAAGGGTGCCAAACCAACATGAGGATGCTGCATTAGCTCTGAGATTACAGAGGGAGGAGTTTATGGAGGCTTTTAGGGGAACCAGTGATCAATCAAGTGCCTCTCTTTCGTTGGCTAGAGCGAACCTGAGAGCCATGGCATCTAGAGCCACTAACCGTGGTGCTGCAACCCGATTTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92 zf-C3HC4

Protein Analysis

400

Amino Acids

44.47

Weight (kDa)

9.42

Isoelectric Point (pI)

71.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4 PF00097 165 - 203 3.5e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 165 - 201 1.1e-06 RING-type zinc-finger
zf-C3HC4_2 PF13923 165 - 203 1e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 597, 1027
AccI GTMKAC 1 cut(s) 177
AciI CCGC 4 cut(s) 122, 125, 265, 683
AclWI GGATC 2 cut(s) 289, 860
AcoI YGGCCR 1 cut(s) 126
AfaI GTAC 1 cut(s) 529
AfiI CCNNNNNNNGG 3 cut(s) 609, 757, 1042
AgsI TTSAA 4 cut(s) 115, 521, 695, 721
AhdI GACNNNNNGTC 1 cut(s) 148
Alw21I GWGCWC 2 cut(s) 431, 446
Alw26I GTCTC 1 cut(s) 156
AlwI GGATC 2 cut(s) 289, 860
AlwNI CAGNNNCTG 2 cut(s) 552, 676
AoxI GGCC 4 cut(s) 76, 126, 759, 974
ApeKI GCWGC 6 cut(s) 575, 613, 707, 930, 1049, 1184
AspS9I GGNCC 2 cut(s) 77, 228
AsuC2I CCSGG 2 cut(s) 287, 299
AsuHPI GGTGA 2 cut(s) 16, 434
AvaII GGWCC 1 cut(s) 228
BaeGI GKGCMC 1 cut(s) 602
BanI GGYRCC 2 cut(s) 597, 1027
BanII GRGCYC 3 cut(s) 32, 287, 431
Bbv12I GWGCWC 2 cut(s) 431, 446
BbvI GCAGC 6 cut(s) 562, 625, 719, 942, 1036, 1171
BccI CCATC 1 cut(s) 412
BclI TGATCA 1 cut(s) 1108
BcnI CCSGG 2 cut(s) 287, 299
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 4 cut(s) 878, 926, 1137, 1164
BfmI CTRYAG 1 cut(s) 576
BglII AGATCT 1 cut(s) 632
BisI GCNGC 8 cut(s) 123, 126, 576, 614, 708, 931, 1050, 1185
BlsI GCNGC 8 cut(s) 124, 127, 577, 615, 709, 932, 1051, 1186
Bme1390I CCNGG 2 cut(s) 287, 299
Bme18I GGWCC 1 cut(s) 228
BmeRI GACNNNNNGTC 1 cut(s) 148
BmgT120I GGNCC 2 cut(s) 77, 228
BmiI GGNNCC 4 cut(s) 599, 715, 1029, 1102
BmrFI CCNGG 2 cut(s) 287, 299
BmrI ACTGGG 2 cut(s) 53, 519
BmsI GCATC 3 cut(s) 991, 1036, 1169
BmuI ACTGGG 2 cut(s) 53, 519
BpmI CTGGAG 1 cut(s) 732
Bpu10I CCTNAGC 1 cut(s) 476
BpuEI CTTGAG 2 cut(s) 430, 763
BpuMI CCSGG 2 cut(s) 287, 299
BsaBI GATNNNNATC 1 cut(s) 115
BsaJI CCNNGG 3 cut(s) 129, 1155, 1177
BsaWI WCCGGW 1 cut(s) 225
Bsc4I CCNNNNNNNGG 3 cut(s) 609, 757, 1042
Bse1I ACTGG 4 cut(s) 59, 525, 944, 1104
Bse3DI GCAATG 1 cut(s) 631
Bse8I GATNNNNATC 1 cut(s) 115
BseDI CCNNGG 3 cut(s) 129, 1155, 1177
BseGI GGATG 2 cut(s) 487, 1051
BseJI GATNNNNATC 1 cut(s) 115
BseLI CCNNNNNNNGG 3 cut(s) 609, 757, 1042
BseMI GCAATG 1 cut(s) 631
BseMII CTCAG 4 cut(s) 490, 897, 1052, 1139
BseNI ACTGG 4 cut(s) 59, 525, 944, 1104
BseRI GAGGAG 1 cut(s) 1091
BseSI GKGCMC 1 cut(s) 602
BseXI GCAGC 6 cut(s) 562, 625, 719, 942, 1036, 1171
BseYI CCCAGC 1 cut(s) 737
BsgI GTGCAG 1 cut(s) 855
Bsh1285I CGRYCG 1 cut(s) 572
BshFI GGCC 4 cut(s) 78, 128, 761, 976
BshNI GGYRCC 2 cut(s) 597, 1027
BsiEI CGRYCG 1 cut(s) 572
BsiHKAI GWGCWC 2 cut(s) 431, 446
BsiSI CCGG 4 cut(s) 188, 226, 287, 299
BslFI GGGAC 2 cut(s) 90, 155
BslI CCNNNNNNNGG 3 cut(s) 609, 757, 1042
BsmAI GTCTC 1 cut(s) 156
BsmFI GGGAC 2 cut(s) 90, 155
BsnI GGCC 4 cut(s) 78, 128, 761, 976
Bsp1286I GDGCHC 5 cut(s) 32, 287, 431, 446, 602
Bsp143I GATC 8 cut(s) 66, 159, 215, 294, 569, 632, 865, 1108
Bsp19I CCATGG 2 cut(s) 129, 1155
BspACI CCGC 4 cut(s) 122, 125, 265, 683
BspANI GGCC 4 cut(s) 78, 128, 761, 976
BspCNI CTCAG 4 cut(s) 489, 898, 1053, 1140
BspLI GGNNCC 4 cut(s) 599, 715, 1029, 1102
BspMAI CTGCAG 1 cut(s) 580
BspPI GGATC 2 cut(s) 289, 860
BspT107I GGYRCC 2 cut(s) 597, 1027
BsrDI GCAATG 1 cut(s) 631
BsrI ACTGG 4 cut(s) 59, 525, 944, 1104
BssECI CCNNGG 3 cut(s) 129, 1155, 1177
BssMI GATC 8 cut(s) 66, 159, 215, 294, 569, 632, 865, 1108
BssT1I CCWWGG 2 cut(s) 129, 1155
Bst4CI ACNGT 3 cut(s) 643, 652, 1178
Bst6I CTCTTC 2 cut(s) 141, 587
BstC8I GCNNGC 3 cut(s) 166, 566, 611
BstDEI CTNAG 4 cut(s) 476, 906, 1061, 1148
BstDSI CCRYGG 3 cut(s) 129, 1155, 1177
BstF5I GGATG 2 cut(s) 487, 1051
BstKTI GATC 8 cut(s) 69, 162, 218, 297, 572, 635, 868, 1111
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 8 cut(s) 66, 159, 215, 294, 569, 632, 865, 1108
BstMCI CGRYCG 1 cut(s) 572
BstMWI GCNNNNNNNGC 7 cut(s) 131, 606, 704, 713, 878, 1055, 1166
BstSCI CCNGG 2 cut(s) 285, 297
BstSFI CTRYAG 1 cut(s) 576
BstSLI GKGCMC 1 cut(s) 602
BstV1I GCAGC 6 cut(s) 562, 625, 719, 942, 1036, 1171
BstX2I RGATCY 1 cut(s) 632
BstYI RGATCY 1 cut(s) 632
BsuRI GGCC 4 cut(s) 78, 128, 761, 976
BtgI CCRYGG 3 cut(s) 129, 1155, 1177
BtsCI GGATG 2 cut(s) 487, 1051
BtsIMutI CAGTG 2 cut(s) 639, 1111
Cac8I GCNNGC 3 cut(s) 166, 566, 611
CaiI CAGNNNCTG 2 cut(s) 552, 676
Cfr13I GGNCC 2 cut(s) 77, 228
Csp6I GTAC 1 cut(s) 528
CviAII CATG 4 cut(s) 130, 466, 1040, 1156
CviQI GTAC 1 cut(s) 528
DdeI CTNAG 4 cut(s) 476, 906, 1061, 1148
DpnI GATC 8 cut(s) 68, 161, 217, 296, 571, 634, 867, 1110
DpnII GATC 8 cut(s) 66, 159, 215, 294, 569, 632, 865, 1108
DriI GACNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 126
Eam1104I CTCTTC 2 cut(s) 141, 587
Eam1105I GACNNNNNGTC 1 cut(s) 148
EarI CTCTTC 2 cut(s) 141, 587
Ecl136II GAGCTC 1 cut(s) 429
Eco130I CCWWGG 2 cut(s) 129, 1155
Eco147I AGGCCT 2 cut(s) 761, 976
Eco24I GRGCYC 3 cut(s) 32, 287, 431
Eco32I GATATC 1 cut(s) 954
Eco47I GGWCC 1 cut(s) 228
Eco53kI GAGCTC 1 cut(s) 429
EcoICRI GAGCTC 1 cut(s) 429
EcoRV GATATC 1 cut(s) 954
EcoT14I CCWWGG 2 cut(s) 129, 1155
EcoT38I GRGCYC 3 cut(s) 32, 287, 431
ErhI CCWWGG 2 cut(s) 129, 1155
FaeI CATG 4 cut(s) 133, 469, 1043, 1159
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FaqI GGGAC 2 cut(s) 90, 155
FatI CATG 4 cut(s) 129, 465, 1039, 1155
FbaI TGATCA 1 cut(s) 1108
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 8 cut(s) 123, 126, 576, 614, 708, 931, 1050, 1185
FokI GGATG 2 cut(s) 494, 1058
FriOI GRGCYC 3 cut(s) 32, 287, 431
Fsp4HI GCNGC 8 cut(s) 123, 126, 576, 614, 708, 931, 1050, 1185
FspBI CTAG 4 cut(s) 878, 926, 1137, 1164
GluI GCNGC 8 cut(s) 123, 126, 576, 614, 708, 931, 1050, 1185
GsaI CCCAGC 1 cut(s) 741
GsuI CTGGAG 1 cut(s) 732
HaeIII GGCC 4 cut(s) 78, 128, 761, 976
HapII CCGG 4 cut(s) 188, 226, 287, 299
Hin1II CATG 4 cut(s) 133, 469, 1043, 1159
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 7 cut(s) 50, 111, 149, 235, 454, 784, 910
HpaII CCGG 4 cut(s) 188, 226, 287, 299
HphI GGTGA 2 cut(s) 16, 434
Hpy166II GTNNAC 3 cut(s) 178, 542, 646
Hpy188I TCNGA 2 cut(s) 71, 1062
Hpy188III TCNNGA 6 cut(s) 157, 255, 311, 728, 920, 1164
Hpy8I GTNNAC 3 cut(s) 178, 542, 646
Hpy99I CGWCG 3 cut(s) 179, 182, 1015
HpyAV CCTTC 4 cut(s) 352, 789, 825, 1017
HpyCH4III ACNGT 3 cut(s) 643, 652, 1178
HpyCH4V TGCA 8 cut(s) 465, 578, 609, 639, 872, 1004, 1052, 1187
HpyF10VI GCNNNNNNNGC 7 cut(s) 131, 606, 704, 713, 878, 1055, 1166
HpyF3I CTNAG 4 cut(s) 476, 906, 1061, 1148
Hsp92II CATG 4 cut(s) 133, 469, 1043, 1159
Ksp22I TGATCA 1 cut(s) 1108
Kzo9I GATC 8 cut(s) 66, 159, 215, 294, 569, 632, 865, 1108
LmnI GCTCC 2 cut(s) 190, 713
Lsp1109I GCAGC 6 cut(s) 562, 625, 719, 942, 1036, 1171
LweI GCATC 3 cut(s) 991, 1036, 1169
MaeI CTAG 4 cut(s) 878, 926, 1137, 1164
MaeIII GTNAC 1 cut(s) 888
MalI GATC 8 cut(s) 68, 161, 217, 296, 571, 634, 867, 1110
MboI GATC 8 cut(s) 66, 159, 215, 294, 569, 632, 865, 1108
MflI RGATCY 1 cut(s) 632
MhlI GDGCHC 5 cut(s) 32, 287, 431, 446, 602
MluCI AATT 4 cut(s) 247, 372, 666, 969
MlyI GAGTC 2 cut(s) 158, 229
MnlI CCTC 8 cut(s) 588, 853, 978, 1036, 1065, 1069, 1081, 1132
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 1044
MspA1I CMGCKG 1 cut(s) 710
MspI CCGG 4 cut(s) 188, 226, 287, 299
MspR9I CCNGG 2 cut(s) 287, 299
MwoI GCNNNNNNNGC 7 cut(s) 131, 606, 704, 713, 878, 1055, 1166
NciI CCSGG 2 cut(s) 287, 299
NcoI CCATGG 2 cut(s) 129, 1155
NdeII GATC 8 cut(s) 66, 159, 215, 294, 569, 632, 865, 1108
NlaIII CATG 4 cut(s) 133, 469, 1043, 1159
NlaIV GGNNCC 4 cut(s) 599, 715, 1029, 1102
PceI AGGCCT 2 cut(s) 761, 976
PfeI GAWTC 5 cut(s) 50, 111, 454, 784, 910
PkrI GCNGC 8 cut(s) 124, 127, 577, 615, 709, 932, 1051, 1186
Ple19I CGATCG 1 cut(s) 572
PleI GAGTC 2 cut(s) 157, 229
PpsI GAGTC 2 cut(s) 157, 229
Psp124BI GAGCTC 1 cut(s) 431
PspFI CCCAGC 1 cut(s) 737
PspN4I GGNNCC 4 cut(s) 599, 715, 1029, 1102
PspPI GGNCC 2 cut(s) 77, 228
PstI CTGCAG 1 cut(s) 580
PstNI CAGNNNCTG 2 cut(s) 552, 676
PsuI RGATCY 1 cut(s) 632
PvuI CGATCG 1 cut(s) 572
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 1 cut(s) 529
RsaNI GTAC 1 cut(s) 528
RseI CAYNNNNRTG 1 cut(s) 1044
SacI GAGCTC 1 cut(s) 431
SalI GTCGAC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 8 cut(s) 123, 126, 576, 614, 708, 931, 1050, 1185
Sau3AI GATC 8 cut(s) 66, 159, 215, 294, 569, 632, 865, 1108
Sau96I GGNCC 2 cut(s) 77, 228
SchI GAGTC 2 cut(s) 158, 229
ScrFI CCNGG 2 cut(s) 287, 299
SduI GDGCHC 5 cut(s) 32, 287, 431, 446, 602
SfaNI GCATC 3 cut(s) 991, 1036, 1169
SfcI CTRYAG 1 cut(s) 576
SgrDI CGTCGACG 1 cut(s) 176
SinI GGWCC 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 1044
SmlI CTYRAG 2 cut(s) 445, 778
SmoI CTYRAG 2 cut(s) 445, 778
Sse9I AATT 4 cut(s) 247, 372, 666, 969
SseBI AGGCCT 2 cut(s) 761, 976
SsiI CCGC 4 cut(s) 122, 125, 265, 683
SspMI CTAG 4 cut(s) 878, 926, 1137, 1164
SstI GAGCTC 1 cut(s) 431
StuI AGGCCT 2 cut(s) 761, 976
StyD4I CCNGG 2 cut(s) 285, 297
StyI CCWWGG 2 cut(s) 129, 1155
TaaI ACNGT 3 cut(s) 643, 652, 1178
TaqI TCGA 6 cut(s) 53, 177, 293, 452, 919, 940
TasI AATT 4 cut(s) 247, 372, 666, 969
TauI GCSGC 2 cut(s) 125, 128
TfiI GAWTC 5 cut(s) 50, 111, 454, 784, 910
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 2 cut(s) 646, 1111
TseI GCWGC 6 cut(s) 575, 613, 707, 930, 1049, 1184
TspDTI ATGAA 2 cut(s) 240, 402
TspRI CASTG 2 cut(s) 646, 1111
VpaK11BI GGWCC 1 cut(s) 228
XbaI TCTAGA 1 cut(s) 1163
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 4 cut(s) 878, 926, 1137, 1164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.