Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012378.1

Orthogroup ID

OG0001421

Physical Location & Seq

Genomic Coordinates Forward (+)

8033 .. 8575

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012378.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atggatatgaacctccttcgtcaatcttcagatggcacaactctccacatagttgtcgcggaggaaatcgactgcatttacttctcggctaatgacctctccgccccgcctctcttcaagcaaccgccgctcgacatggatggcgaggatccctacaaccagatcatacgcttaaggccagatagggtttcaaatgcctcgagatacgagtgcttgtacggctgggatttcagcacgtccaaccatttgttgcggtccgacgtcgtttctttggagcaggagttcgtacggtgtaaaacgccgttgagtgtgttgatcaggagcaaacgtggggtgaatgatgcggtgaggtctcagttaggtttaaagggagaacaacaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_92 zf-C3HC4

Protein Analysis

127

Amino Acids

14.43

Weight (kDa)

5.09

Isoelectric Point (pI)

57.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27330 AT5G40720 AT5G40720 AT5G40720
fragaria_vesca	FvH4_6g52450 FvH4_6g52460 FvH4_6g52470 FvH4_6g52470
malus_domestica	MD09G1017800.v1.1 MD09G1017900.v1.1 MD17G1018600.v1.1
prunus_persica	Prupe.3G299100_v2.0.a1
pyrus_communis	pycom111g01480 pycom111g01490 pycom17g01530
rosa_chinensis	RchiOBHm_Chr2g0174091 RchiOBHm_Chr2g0174101 RchiOBHm_Chr2g0174111
rosa_laevigata	RLG00000021621 RLG00000022246 RLG00000022247
rosa_multiflora	Rmu_co8270263.1_g000001 Rmu_co8399791.1_g000001 Rmu_sc0003016.1_g000002 Rmu_sc0003016.1_g000003 Rmu_sc0003188.1_g000035 Rmu_sc0003188.1_g000036 Rmu_sc0012378.1_g000002 Rmu_sc0023199.1_g000001 Rmu_sc0023199.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078450 Rroxscaffold_2G00078460 Rroxscaffold_2G00084880
rosa_rugosa	Rorug02G0523200 Rorug02G0574700 Rorug02G0574700
rosa_samantha	Rh2AG589300 Rh2AG654100 Rh2AG654200 Rh2AG654300 Rh2BG601500 Rh2BG665300 Rh2BG665400 Rh2BG665500 Rh2CG572000 Rh2CG629600 Rh2CG629700 Rh2DG611900 Rh2DG612000 Rh2DG680000 Rh2DG680100
rosa_wichuraiana	Rw2G053700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	264
AccBSI	CCGCTC	1 cut(s)	130
AccII	CGCG	1 cut(s)	59
AciI	CCGC	7 cut(s)	59, 102, 107, 125, 128, 253, 344
AclWI	GGATC	2 cut(s)	143, 156
AcuI	CTGAAG	1 cut(s)	12
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	2 cut(s)	218, 288
AflII	CTTAAG	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	118, 192
AjiI	CACGTC	1 cut(s)	237
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
Alw26I	GTCTC	1 cut(s)	357
AlwI	GGATC	2 cut(s)	143, 156
Ama87I	CYCGRG	1 cut(s)	199
AoxI	GGCC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	255
AsuHPI	GGTGA	2 cut(s)	346, 358
AvaI	CYCGRG	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	255
BamHI	GGATCC	1 cut(s)	148
BccI	CCATC	2 cut(s)	26, 134
BceAI	ACGGC	2 cut(s)	235, 286
BclI	TGATCA	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	357
BfrI	CTTAAG	1 cut(s)	172
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
Bme18I	GGWCC	1 cut(s)	255
BmeT110I	CYCGRG	1 cut(s)	199
BmgBI	CACGTC	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	150
BmsI	GCATC	1 cut(s)	331
BsaHI	GRCGYC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	357
BsaXI	ACNNNNNCTCC	4 cut(s)	266, 296, 313, 343
BseGI	GGATG	1 cut(s)	145
BseMII	CTCAG	1 cut(s)	368
BseYI	CCCAGC	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	1 cut(s)	178
BsiHKCI	CYCGRG	1 cut(s)	199
BsiWI	CGTACG	1 cut(s)	286
BsmAI	GTCTC	1 cut(s)	357
BsnI	GGCC	1 cut(s)	178
Bso31I	GGTCTC	1 cut(s)	357
BsoBI	CYCGRG	1 cut(s)	199
Bsp143I	GATC	3 cut(s)	148, 162, 315
BspACI	CCGC	7 cut(s)	59, 102, 107, 125, 128, 253, 344
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	150
BspPI	GGATC	2 cut(s)	143, 156
BspTI	CTTAAG	1 cut(s)	172
BspTNI	GGTCTC	1 cut(s)	357
BsrBI	CCGCTC	1 cut(s)	130
BssMI	GATC	3 cut(s)	148, 162, 315
BssNI	GRCGYC	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	291
Bst6I	CTCTTC	1 cut(s)	119
BstACI	GRCGYC	1 cut(s)	261
BstAFI	CTTAAG	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	354
BstF5I	GGATG	1 cut(s)	145
BstFNI	CGCG	1 cut(s)	59
BstKTI	GATC	3 cut(s)	151, 165, 318
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	3 cut(s)	148, 162, 315
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 219
BstUI	CGCG	1 cut(s)	59
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	178
BtrI	CACGTC	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	255
CpoI	CGGWCCG	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	217, 287
CspI	CGGWCCG	1 cut(s)	255
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	3 cut(s)	89, 178, 222
CviKI_1	RGCY	3 cut(s)	89, 178, 222
CviQI	GTAC	2 cut(s)	217, 287
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	3 cut(s)	150, 164, 317
DpnII	GATC	3 cut(s)	148, 162, 315
DraI	TTTAAA	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
EciI	GGCGGA	1 cut(s)	91
Eco31I	GGTCTC	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	255
Eco57I	CTGAAG	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	199
FaeI	CATG	1 cut(s)	139
FaiI	YATR	4 cut(s)	8, 50, 137, 167
FatI	CATG	1 cut(s)	135
FauI	CCCGC	1 cut(s)	114
FbaI	TGATCA	1 cut(s)	315
Fnu4HI	GCNGC	1 cut(s)	128
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	128
GsaI	CCCAGC	1 cut(s)	226
HaeIII	GGCC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	1 cut(s)	139
HphI	GGTGA	2 cut(s)	346, 358
Hpy188I	TCNGA	2 cut(s)	31, 259
Hpy188III	TCNNGA	2 cut(s)	201, 319
Hpy99I	CGWCG	2 cut(s)	263, 266
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4IV	ACGT	3 cut(s)	236, 261, 328
HpyCH4V	TGCA	1 cut(s)	75
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 219
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	3 cut(s)	236, 261, 328
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	315
Kzo9I	GATC	3 cut(s)	148, 162, 315
LmnI	GCTCC	2 cut(s)	274, 321
LpnPI	CCDG	5 cut(s)	173, 192, 208, 263, 304
LweI	GCATC	1 cut(s)	331
MaeII	ACGT	3 cut(s)	236, 261, 328
MalI	GATC	3 cut(s)	150, 164, 317
MbiI	CCGCTC	1 cut(s)	130
MboI	GATC	3 cut(s)	148, 162, 315
MboII	GAAGA	2 cut(s)	18, 106
MflI	RGATCY	1 cut(s)	148
MmeI	TCCRAC	2 cut(s)	264, 282
MnlI	CCTC	7 cut(s)	23, 55, 107, 120, 139, 208, 342
MseI	TTAA	2 cut(s)	173, 365
MspCI	CTTAAG	1 cut(s)	172
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	2 cut(s)	127, 219
NdeII	GATC	3 cut(s)	148, 162, 315
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	1 cut(s)	150
NmeAIII	GCCGAG	1 cut(s)	65
PaeR7I	CTCGAG	1 cut(s)	199
Pfl23II	CGTACG	1 cut(s)	286
PkrI	GCNGC	1 cut(s)	129
PspFI	CCCAGC	1 cut(s)	222
PspLI	CGTACG	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	2 cut(s)	218, 288
RsaNI	GTAC	2 cut(s)	217, 287
Rsr2I	CGGWCCG	1 cut(s)	255
RsrII	CGGWCCG	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	173, 365
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	3 cut(s)	148, 162, 315
Sau96I	GGNCC	1 cut(s)	255
SetI	ASST	7 cut(s)	15, 99, 239, 264, 331, 353, 364
SfaNI	GCATC	1 cut(s)	331
Sfr274I	CTCGAG	1 cut(s)	199
SinI	GGWCC	1 cut(s)	255
SlaI	CTCGAG	1 cut(s)	199
SmlI	CTYRAG	2 cut(s)	172, 199
SmoI	CTYRAG	2 cut(s)	172, 199
SsiI	CCGC	7 cut(s)	59, 102, 107, 125, 128, 253, 344
TaaI	ACNGT	1 cut(s)	291
TaiI	ACGT	3 cut(s)	239, 264, 331
TaqI	TCGA	3 cut(s)	69, 132, 200
TauI	GCSGC	1 cut(s)	130
Tru1I	TTAA	2 cut(s)	173, 365
Tru9I	TTAA	2 cut(s)	173, 365
TspDTI	ATGAA	1 cut(s)	23
Vha464I	CTTAAG	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	255
XhoI	CTCGAG	1 cut(s)	199
ZraI	GACGTC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.