MD09G1017800.v1.1

Glycosyl transferase family 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0001421
Physical Location & Seq
Reverse (-)
1107587 .. 1109840
2254 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1017800.v1.1.491

Sequence Viewer

Length: 1182 bp
ATGGCGAGGAAAGAAGAAGAGCCAAAACAGAGTCTGATAAACCCGAAAAACCAGCAAAGAAAATCAGGCCCGGTTGAAGTCGAAACCAATGGCACCAGCGGCAATGCTATTATATTCAGCCCCAGATTCAAATCCGTGGCCGCCATGGCCGGTTGGGACGAAGAGAGCCTTCTAATTGCAAGCCTGGTGGTTGATGATACGCCGGAGAGAGATTTTAAACACAAGAAACGCTCCGTCTTGGACTCCCACACCCCAATCACCAATTCATCAAGAAGAAAGCGCAGAGCTCAGAGAAGGAGCCCGATTTCAATCCCTGTAGCTGTTCTTGATCTTGATGATGCAGAAGAAACTGCGAAAGACGAGAGTGGGAAAGAGAAGAAGGTGGAAGTGAAAATTGTTGCGAATAAAGAGAAGGAAACGAGAGAAGATAAAATGGCTGAGAGCTCTGGTGGTTCTTGCCCGCCAAGTTCGGAACTTCCTTGCTTGGATAAGCTCAGGGAAGAACTTTCTTGCGCTATCTGCTTGGAGATTTGCTATGAACCAAGTACTACTACTTGTGGCCACAGTTTCTGTAAGAAATGCTTGCGGTCCGCCGCTGATAAATGTGGGAAGAGGTGCCCCAAGTGCAGGCAGCTAATCAGCAATAGTAGATCCTGCACCGTCAACACGGTTCTTTGGAACACGATACAGCTTCTGTTTCCACAAGAAGTTGAAGCAAGGAAAGCTGTTGGAGCCTCAAATGGTAGAGAAACTCCTCGTCAAAGCCCCGGAAAGGCTGTGTACAACACAAGGAATGTTCAAAGTAGAAGGGCATCGGGGGTATCAAGCAGCAGCAGCAGCAGCAGCAGCAGAGAAATGACCATGAGGAGAAGACGGGTAATATTAACCCAAGATGAAGAGGACGAACCTGAGCATCGGAACCCAGAACAAGGCGCTGATAGAAGTATTCGGTTTATAAGGGCATCAAGCAGAGAGATGAATGCGAGGAGTAGTAGTAGAAGGATCCCAAGCCAAGACGAGGATGCTGCATTGGCTCTAAGATTGCAGAGGGAGGAATTTATGGACGCTTTTAGGGGAACCCCTGATGAATCTAGTAGTGCTTGGATTTCTTCGGCGAGAGCAAACATGAGAGCCATGGCATCCAGAGCTACTAACCATCGTTTTACCCGACATATGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92 zf-C3HC4

Protein Analysis

394

Amino Acids

43.97

Weight (kDa)

9.33

Isoelectric Point (pI)

76.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_2 PF13923 171 - 209 2.4e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 171 - 209 4.4e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 171 - 207 1.4e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 956
AccB1I GGYRCC 2 cut(s) 92, 615
AciI CCGC 6 cut(s) 99, 141, 461, 586, 591, 594
AclWI GGATC 3 cut(s) 645, 997, 1010
AcoI YGGCCR 3 cut(s) 138, 147, 559
AcsI RAATTY 1 cut(s) 1055
AfaI GTAC 2 cut(s) 547, 782
AfiI CCNNNNNNNGG 4 cut(s) 627, 772, 929, 1018
AgsI TTSAA 5 cut(s) 77, 130, 309, 713, 800
AjnI CCWGG 1 cut(s) 183
AjuI GAANNNNNNNTTGG 2 cut(s) 247, 279
AluBI AGCT 8 cut(s) 287, 320, 444, 493, 634, 691, 725, 1148
AluI AGCT 8 cut(s) 287, 320, 444, 493, 634, 691, 725, 1148
Alw21I GWGCWC 2 cut(s) 289, 446
AlwI GGATC 3 cut(s) 645, 997, 1010
AlwNI CAGNNNCTG 3 cut(s) 34, 570, 694
AoxI GGCC 4 cut(s) 67, 138, 147, 559
ApeKI GCWGC 9 cut(s) 631, 828, 831, 834, 837, 840, 843, 846, 1025
ApoI RAATTY 1 cut(s) 1055
AspLEI GCGC 3 cut(s) 282, 515, 935
AspS9I GGNCC 2 cut(s) 68, 588
AsuC2I CCSGG 2 cut(s) 71, 768
AsuHPI GGTGA 1 cut(s) 250
AvaII GGWCC 1 cut(s) 588
BaeGI GKGCMC 1 cut(s) 620
BalI TGGCCA 1 cut(s) 561
BamHI GGATCC 1 cut(s) 1002
BanI GGYRCC 2 cut(s) 92, 615
BanII GRGCYC 3 cut(s) 289, 302, 446
BbsI GAAGAC 1 cut(s) 877
Bbv12I GWGCWC 2 cut(s) 289, 446
BbvI GCAGC 9 cut(s) 643, 840, 843, 846, 849, 852, 855, 858, 1012
BccI CCATC 1 cut(s) 1164
BcgI CGANNNNNNTGC 2 cut(s) 1007, 1041
BciT130I CCWGG 1 cut(s) 185
BcnI CCSGG 2 cut(s) 71, 768
BfaI CTAG 1 cut(s) 1092
BfmI CTRYAG 1 cut(s) 315
BfoI RGCGCY 1 cut(s) 936
BglI GCCNNNNNGGC 1 cut(s) 146
BmcAI AGTACT 1 cut(s) 547
Bme1390I CCNGG 3 cut(s) 71, 185, 768
Bme18I GGWCC 1 cut(s) 588
BmgT120I GGNCC 2 cut(s) 68, 588
BmiI GGNNCC 7 cut(s) 94, 299, 617, 733, 920, 1004, 1078
BmrFI CCNGG 3 cut(s) 71, 185, 768
BmsI GCATC 6 cut(s) 328, 821, 922, 971, 1012, 1148
BoxI GACNNNNGTC 1 cut(s) 1174
BpiI GAAGAC 1 cut(s) 877
Bpu10I CCTNAGC 2 cut(s) 494, 909
BpuMI CCSGG 2 cut(s) 71, 768
BsaBI GATNNNNATC 2 cut(s) 130, 308
BsaJI CCNNGG 4 cut(s) 135, 144, 766, 1134
BsaXI ACNNNNNCTCC 2 cut(s) 979, 1009
Bsc4I CCNNNNNNNGG 4 cut(s) 627, 772, 929, 1018
Bse118I RCCGGY 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 109
Bse8I GATNNNNATC 2 cut(s) 130, 308
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 4 cut(s) 135, 144, 766, 1134
BseGI GGATG 2 cut(s) 1027, 1139
BseJI GATNNNNATC 2 cut(s) 130, 308
BseLI CCNNNNNNNGG 4 cut(s) 627, 772, 929, 1018
BseMI GCAATG 1 cut(s) 109
BseMII CTCAG 4 cut(s) 302, 429, 508, 900
BseRI GAGGAG 3 cut(s) 744, 880, 1000
BseSI GKGCMC 1 cut(s) 620
BseXI GCAGC 9 cut(s) 643, 840, 843, 846, 849, 852, 855, 858, 1012
BsgI GTGCAG 2 cut(s) 640, 646
BshFI GGCC 4 cut(s) 69, 140, 149, 561
BshNI GGYRCC 2 cut(s) 92, 615
BsiHKAI GWGCWC 2 cut(s) 289, 446
BsiSI CCGG 4 cut(s) 71, 150, 203, 768
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 4 cut(s) 627, 772, 929, 1018
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 985
BsnI GGCC 4 cut(s) 69, 140, 149, 561
Bsp1286I GDGCHC 4 cut(s) 289, 302, 446, 620
Bsp1407I TGTACA 1 cut(s) 780
Bsp143I GATC 3 cut(s) 328, 650, 1002
Bsp19I CCATGG 2 cut(s) 144, 1134
BspACI CCGC 6 cut(s) 99, 141, 461, 586, 591, 594
BspANI GGCC 4 cut(s) 69, 140, 149, 561
BspCNI CTCAG 4 cut(s) 301, 430, 507, 901
BspLI GGNNCC 7 cut(s) 94, 299, 617, 733, 920, 1004, 1078
BspPI GGATC 3 cut(s) 645, 997, 1010
BspQI GCTCTTC 1 cut(s) 12
BspT107I GGYRCC 2 cut(s) 92, 615
BsrDI GCAATG 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 149
BsrGI TGTACA 1 cut(s) 780
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 4 cut(s) 135, 144, 766, 1134
BssMI GATC 3 cut(s) 328, 650, 1002
BssT1I CCWWGG 2 cut(s) 144, 1134
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 3 cut(s) 566, 661, 670
Bst6I CTCTTC 4 cut(s) 12, 156, 605, 891
BstAUI TGTACA 1 cut(s) 780
BstC8I GCNNGC 4 cut(s) 181, 461, 584, 629
BstDEI CTNAG 5 cut(s) 288, 438, 494, 909, 1037
BstDSI CCRYGG 3 cut(s) 135, 144, 1134
BstF5I GGATG 2 cut(s) 1027, 1139
BstH2I RGCGCY 1 cut(s) 936
BstHHI GCGC 3 cut(s) 282, 515, 935
BstKTI GATC 3 cut(s) 331, 653, 1005
BstMBI GATC 3 cut(s) 328, 650, 1002
BstNI CCWGG 1 cut(s) 185
BstPAI GACNNNNGTC 1 cut(s) 1174
BstSCI CCNGG 3 cut(s) 69, 183, 766
BstSFI CTRYAG 1 cut(s) 315
BstSLI GKGCMC 1 cut(s) 620
BstV1I GCAGC 9 cut(s) 643, 840, 843, 846, 849, 852, 855, 858, 1012
BstV2I GAAGAC 1 cut(s) 877
BstX2I RGATCY 2 cut(s) 650, 1002
BstYI RGATCY 2 cut(s) 650, 1002
BsuRI GGCC 4 cut(s) 69, 140, 149, 561
BtgI CCRYGG 3 cut(s) 135, 144, 1134
BtsCI GGATG 2 cut(s) 1027, 1139
Cac8I GCNNGC 4 cut(s) 181, 461, 584, 629
CaiI CAGNNNCTG 3 cut(s) 34, 570, 694
CfoI GCGC 3 cut(s) 282, 515, 935
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 2 cut(s) 68, 588
CpoI CGGWCCG 1 cut(s) 588
CseI GACGC 1 cut(s) 1073
Csp6I GTAC 2 cut(s) 546, 781
CspCI CAANNNNNGTGG 2 cut(s) 168, 203
CspI CGGWCCG 1 cut(s) 588
CviAII CATG 4 cut(s) 145, 862, 1126, 1135
CviQI GTAC 2 cut(s) 546, 781
DdeI CTNAG 5 cut(s) 288, 438, 494, 909, 1037
DpnI GATC 3 cut(s) 330, 652, 1004
DpnII GATC 3 cut(s) 328, 650, 1002
DraI TTTAAA 1 cut(s) 217
EaeI YGGCCR 3 cut(s) 138, 147, 559
Eam1104I CTCTTC 4 cut(s) 12, 156, 605, 891
EarI CTCTTC 4 cut(s) 12, 156, 605, 891
EciI GGCGGA 1 cut(s) 580
Ecl136II GAGCTC 2 cut(s) 287, 444
Eco130I CCWWGG 2 cut(s) 144, 1134
Eco24I GRGCYC 3 cut(s) 289, 302, 446
Eco47I GGWCC 1 cut(s) 588
Eco53kI GAGCTC 2 cut(s) 287, 444
EcoICRI GAGCTC 2 cut(s) 287, 444
EcoRII CCWGG 1 cut(s) 183
EcoT14I CCWWGG 2 cut(s) 144, 1134
EcoT38I GRGCYC 3 cut(s) 289, 302, 446
ErhI CCWWGG 2 cut(s) 144, 1134
FaeI CATG 4 cut(s) 148, 865, 1129, 1138
FalI AAGNNNNNCTT 4 cut(s) 153, 185, 566, 598
FaqI GGGAC 1 cut(s) 170
FatI CATG 4 cut(s) 144, 861, 1125, 1134
FauI CCCGC 1 cut(s) 468
FauNDI CATATG 1 cut(s) 1173
FokI GGATG 2 cut(s) 1034, 1126
FriOI GRGCYC 3 cut(s) 289, 302, 446
FspBI CTAG 1 cut(s) 1092
GlaI GCGC 3 cut(s) 281, 514, 934
HaeII RGCGCY 1 cut(s) 936
HaeIII GGCC 4 cut(s) 69, 140, 149, 561
HapII CCGG 4 cut(s) 71, 150, 203, 768
HgaI GACGC 1 cut(s) 1073
HhaI GCGC 3 cut(s) 282, 515, 935
Hin1II CATG 4 cut(s) 148, 865, 1129, 1138
Hin6I GCGC 3 cut(s) 280, 513, 933
HinP1I GCGC 3 cut(s) 280, 513, 933
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HinfI GANTC 4 cut(s) 31, 126, 242, 1088
HpaII CCGG 4 cut(s) 71, 150, 203, 768
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 2 cut(s) 664, 781
Hpy188I TCNGA 4 cut(s) 36, 291, 472, 918
Hpy188III TCNNGA 4 cut(s) 270, 326, 332, 1143
Hpy8I GTNNAC 2 cut(s) 664, 781
HpyAV CCTTC 6 cut(s) 179, 288, 373, 406, 801, 993
HpyCH4III ACNGT 3 cut(s) 566, 661, 670
HpyCH4V TGCA 6 cut(s) 179, 341, 627, 657, 1028, 1045
HpyF3I CTNAG 5 cut(s) 288, 438, 494, 909, 1037
Hsp92II CATG 4 cut(s) 148, 865, 1129, 1138
HspAI GCGC 3 cut(s) 280, 513, 933
Kzo9I GATC 3 cut(s) 328, 650, 1002
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 3 cut(s) 236, 297, 731
Lsp1109I GCAGC 9 cut(s) 643, 840, 843, 846, 849, 852, 855, 858, 1012
LweI GCATC 6 cut(s) 328, 821, 922, 971, 1012, 1148
MaeI CTAG 1 cut(s) 1092
MalI GATC 3 cut(s) 330, 652, 1004
MboI GATC 3 cut(s) 328, 650, 1002
MflI RGATCY 2 cut(s) 650, 1002
MhlI GDGCHC 4 cut(s) 289, 302, 446, 620
MlsI TGGCCA 1 cut(s) 561
MluCI AATT 4 cut(s) 174, 262, 393, 1055
MluNI TGGCCA 1 cut(s) 561
MlyI GAGTC 2 cut(s) 40, 236
MmeI TCCRAC 1 cut(s) 709
MnlI CCTC 9 cut(s) 606, 745, 765, 858, 892, 978, 1012, 1041, 1045
Mox20I TGGCCA 1 cut(s) 561
MscI TGGCCA 1 cut(s) 561
MseI TTAA 2 cut(s) 216, 884
Msp20I TGGCCA 1 cut(s) 561
MspA1I CMGCKG 2 cut(s) 99, 596
MspI CCGG 4 cut(s) 71, 150, 203, 768
MspR9I CCNGG 3 cut(s) 71, 185, 768
Mva1269I GAATGC 1 cut(s) 985
MvaI CCWGG 1 cut(s) 185
NciI CCSGG 2 cut(s) 71, 768
NcoI CCATGG 2 cut(s) 144, 1134
NdeI CATATG 1 cut(s) 1173
NdeII GATC 3 cut(s) 328, 650, 1002
NlaIII CATG 4 cut(s) 148, 865, 1129, 1138
NlaIV GGNNCC 7 cut(s) 94, 299, 617, 733, 920, 1004, 1078
PciSI GCTCTTC 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 1165
PctI GAATGC 1 cut(s) 985
PfeI GAWTC 2 cut(s) 126, 1088
PleI GAGTC 2 cut(s) 39, 236
PpsI GAGTC 2 cut(s) 39, 236
PshAI GACNNNNGTC 1 cut(s) 1174
PsiI TTATAA 1 cut(s) 956
Psp124BI GAGCTC 2 cut(s) 289, 446
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 7 cut(s) 94, 299, 617, 733, 920, 1004, 1078
PspPI GGNCC 2 cut(s) 68, 588
PstNI CAGNNNCTG 3 cut(s) 34, 570, 694
PsuI RGATCY 2 cut(s) 650, 1002
RsaI GTAC 2 cut(s) 547, 782
RsaNI GTAC 2 cut(s) 546, 781
Rsr2I CGGWCCG 1 cut(s) 588
RsrII CGGWCCG 1 cut(s) 588
SacI GAGCTC 2 cut(s) 289, 446
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 216, 884
Sau3AI GATC 3 cut(s) 328, 650, 1002
Sau96I GGNCC 2 cut(s) 68, 588
ScaI AGTACT 1 cut(s) 547
SchI GAGTC 2 cut(s) 40, 236
ScrFI CCNGG 3 cut(s) 71, 185, 768
SduI GDGCHC 4 cut(s) 289, 302, 446, 620
SfaNI GCATC 6 cut(s) 328, 821, 922, 971, 1012, 1148
SfcI CTRYAG 1 cut(s) 315
SfiI GGCCNNNNNGGCC 1 cut(s) 146
SinI GGWCC 1 cut(s) 588
Sse9I AATT 4 cut(s) 174, 262, 393, 1055
SsiI CCGC 6 cut(s) 99, 141, 461, 586, 591, 594
SspI AATATT 1 cut(s) 882
SspMI CTAG 1 cut(s) 1092
SstI GAGCTC 2 cut(s) 289, 446
StyD4I CCNGG 3 cut(s) 69, 183, 766
StyI CCWWGG 2 cut(s) 144, 1134
TaaI ACNGT 3 cut(s) 566, 661, 670
TaqI TCGA 1 cut(s) 81
TasI AATT 4 cut(s) 174, 262, 393, 1055
TatI WGTACW 2 cut(s) 545, 780
TauI GCSGC 3 cut(s) 102, 143, 596
TfiI GAWTC 2 cut(s) 126, 1088
Tru1I TTAA 2 cut(s) 216, 884
Tru9I TTAA 2 cut(s) 216, 884
TseI GCWGC 9 cut(s) 631, 828, 831, 834, 837, 840, 843, 846, 1025
TspDTI ATGAA 5 cut(s) 255, 552, 909, 992, 1101
TspGWI ACGGA 2 cut(s) 124, 223
VpaK11BI GGWCC 1 cut(s) 588
XapI RAATTY 1 cut(s) 1055
XspI CTAG 1 cut(s) 1092
ZrmI AGTACT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.