Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003279

Physical Location & Seq

Genomic Coordinates Reverse (-)

6244293 .. 6246456

Gene Structure 2164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g06071.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGAAGCGCAAGAAATGGTCAGAGCTCGAAGAAAAGACCCTTCTCACAAAATATTCTGAGCTTCTCAGCTCTGGAGCTCTAGCCAAGCTCAAAACCCGTGAGAAAAAATTCAAGCCCATAGCGGAGCATGTGAACTTAGTGCACAACCTTGAGGACCCTGTAACCTTCCCTTTCAAATGGTCCTGGCGCGACGTGTCAATCAAGGTCCAAAACATGCGTCACCAGTATCTGGGAGTCAAGCAGAAGATCCGGGTCTCCAAGGACGAGTTCAACTGGAAGGACGGTGAAAATCACTGGGAGAATTTTTTGAAGTACAAGGAAGTGTTTGGTGATGTGGAGCTTGATGCTAAGGCCAAGAGGTTGTGTGAAAATGACAACTTTGATGTTTTTGGGGATTGTGGGGACTTAGGGTTTGGGATTGACTGTGAGGATTTAGAGGAAGAAGAAGATGAAGAAGAAGATGAACATTTGGAAGAAGAAGAAGAAGAAGATGGTACTGGTGGTGATGACGATAATCGTGGCGAGGAATTGGGTAAAAGTGAAGTTGGTGAGTTTCGGGGTGAAAGAGAAAATGGGGACATGGGAACGGCTCAAAAAAGGAAATTGAGTAAGGTTGGATTGCATAGGAGGTTGGGGTTGATGAGTGCTCAGGTGTTGGACTTGCAGAATATGGTTGTGAACAGGGAAGAGGGGAGGAGAGAGAGGGAGTATAGGATAGAGAAAGGTGAGGCTGAGAGAGAGGATAGGAGAAAAGAAGTTGAGTTTAGGAGAGAGAAGATGAGAAATGAGAAGGAGGACTTATTAGAAGATAGAGAATTGGAGTTACAAGAAAGAGAGGTCATGTGGACAAGAAGGGAGTTTGAGAAAAGGTCGAGGTTACAGGGGGAGTTCGATGAAGAGCGTCAGAGGAGGATGAGGATGGAAGAGAGGAGGGAGGAGGAGGAGTTGGAGTGGCGGGAGAGGATGGTGGCTTTGCAAATTCATCATGAGAAGCAGATGATGCAAATGCATGCTGAGGCATGCCAGAACCAAATGCAGATTCTTGGGGTCATGGCTAGGTTTGTTTGTCAATTTTTTGGGTCGATGAATGATGGCCTTGGAGGTGGTTTAGGGACTCTGCCACCTCAAATTTTGCAGAATTTGCAGCATCCAGGCGGACTGGGTGACAATGGGAAGCCGGATTCCAATTCGCCTTCTGAGTTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

403

Amino Acids

47.56

Weight (kDa)

5.02

Isoelectric Point (pI)

55.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003279)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06071
malus_domestica	MD09G1261100.v1.1
prunus_persica	Prupe.3G158400_v2.0.a1
pyrus_communis	pycom09g17540
rosa_chinensis	RchiOBHm_Chr1g0333501 RchiOBHm_Chr1g0334211 RchiOBHm_Chr7g0221661
rosa_laevigata	RLG00000002147 RLG00000029549 RLG00000029550 RLG00000029599 RLG00000029600 RLG00000029601
rosa_multiflora	Rmu_sc0000494.1_g000002 Rmu_sc0000494.1_g000004 Rmu_sc0000494.1_g000017 Rmu_sc0002955.1_g000015 Rmu_sc0003435.1_g000020 Rmu_sc0005016.1_g000034 Rmu_sc0012130.1_g000001 Rmu_sc0028037.1_g000004
rosa_roxburghii	Rroxscaffold_2G00088180 Rroxscaffold_3G00238140 Rroxscaffold_4G00317400
rosa_rugosa	Rorug01G0109400 Rorug01G0109500 Rorug01G0110100 Rorug01G0110200 Rorug01G0110300 Rorug07G0202800
rosa_samantha	Rh1BG101600 Rh1CG126900 Rh1CG129800 Rh7AG343300 Rh7BG333400
rosa_wichuraiana	Rw0G003360 Rw7G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccII	CGCG	1 cut(s)	189
AciI	CCGC	3 cut(s)	122, 955, 1155
AclWI	GGATC	1 cut(s)	241
AcsI	RAATTY	5 cut(s)	107, 301, 978, 1128, 1138
AfaI	GTAC	2 cut(s)	314, 496
AfiI	CCNNNNNNNGG	1 cut(s)	229
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	4 cut(s)	112, 175, 271, 310
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	2 cut(s)	182, 1150
AjuI	GAANNNNNNNTTGG	4 cut(s)	251, 283, 1023, 1055
AluBI	AGCT	6 cut(s)	25, 61, 69, 77, 88, 340
AluI	AGCT	6 cut(s)	25, 61, 69, 77, 88, 340
Alw21I	GWGCWC	4 cut(s)	27, 79, 144, 649
Alw26I	GTCTC	1 cut(s)	259
Alw44I	GTGCAC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	241
AlwNI	CAGNNNCTG	1 cut(s)	229
AoxI	GGCC	2 cut(s)	351, 1093
ApaLI	GTGCAC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	1144
ApoI	RAATTY	5 cut(s)	107, 301, 978, 1128, 1138
ArsI	GACNNNNNNTTYG	4 cut(s)	202, 234, 395, 427
Asp700I	GAANNNNTTC	1 cut(s)	107
AspLEI	GCGC	2 cut(s)	9, 189
AspS9I	GGNCC	3 cut(s)	154, 180, 205
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	8 cut(s)	212, 296, 341, 515, 560, 572, 737, 1175
AvaII	GGWCC	3 cut(s)	154, 180, 205
BaeGI	GKGCMC	1 cut(s)	144
BanII	GRGCYC	2 cut(s)	27, 79
Bbv12I	GWGCWC	4 cut(s)	27, 79, 144, 649
BbvCI	CCTCAGC	1 cut(s)	1014
BbvI	GCAGC	1 cut(s)	1156
BccI	CCATC	4 cut(s)	485, 913, 958, 1085
BceAI	ACGGC	1 cut(s)	603
BciT130I	CCWGG	2 cut(s)	184, 1152
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	3 cut(s)	80, 1056, 1207
BisI	GCNGC	1 cut(s)	1145
BlsI	GCNGC	1 cut(s)	1146
Bme1390I	CCNGG	3 cut(s)	184, 251, 1152
Bme18I	GGWCC	3 cut(s)	154, 180, 205
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	3 cut(s)	154, 180, 205
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	3 cut(s)	184, 251, 1152
BmrI	ACTGGG	2 cut(s)	304, 1169
BmsI	GCATC	3 cut(s)	334, 990, 1156
BmuI	ACTGGG	2 cut(s)	304, 1169
BpmI	CTGGAG	1 cut(s)	93
Bpu10I	CCTNAGC	3 cut(s)	348, 648, 1014
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	2 cut(s)	258, 1096
BsaXI	ACNNNNNCTCC	4 cut(s)	929, 935, 959, 965
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	5 cut(s)	223, 278, 299, 502, 1164
BseBI	CCWGG	2 cut(s)	184, 1152
BseDI	CCNNGG	2 cut(s)	258, 1096
BseGI	GGATG	4 cut(s)	918, 924, 969, 1147
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	6 cut(s)	48, 79, 662, 723, 1005, 1188
BseNI	ACTGG	5 cut(s)	223, 278, 299, 502, 1164
BseRI	GAGGAG	6 cut(s)	709, 922, 943, 950, 953, 956
BseSI	GKGCMC	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	1156
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	353, 1095
BsiHKAI	GWGCWC	4 cut(s)	27, 79, 144, 649
BsiSI	CCGG	2 cut(s)	250, 1178
BslFI	GGGAC	3 cut(s)	416, 590, 1126
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	3 cut(s)	416, 590, 1126
BsnI	GGCC	2 cut(s)	353, 1095
Bso31I	GGTCTC	1 cut(s)	259
Bsp1286I	GDGCHC	4 cut(s)	27, 79, 144, 649
Bsp143I	GATC	1 cut(s)	246
BspACI	CCGC	3 cut(s)	122, 955, 1155
BspANI	GGCC	2 cut(s)	353, 1095
BspCNI	CTCAG	6 cut(s)	49, 78, 661, 724, 1006, 1189
BspFNI	CGCG	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	985
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	241
BspQI	GCTCTTC	1 cut(s)	891
BspTNI	GGTCTC	1 cut(s)	259
BsrI	ACTGG	5 cut(s)	223, 278, 299, 502, 1164
BssECI	CCNNGG	2 cut(s)	258, 1096
BssMI	GATC	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	258, 1096
Bst2UI	CCWGG	2 cut(s)	184, 1152
Bst4CI	ACNGT	2 cut(s)	284, 425
Bst6I	CTCTTC	3 cut(s)	681, 891, 918
BstAPI	GCANNNNNTGC	2 cut(s)	1000, 1141
BstC8I	GCNNGC	2 cut(s)	1011, 1021
BstDEI	CTNAG	9 cut(s)	57, 65, 136, 348, 406, 648, 732, 1014, 1197
BstF5I	GGATG	4 cut(s)	918, 924, 969, 1147
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	2 cut(s)	9, 189
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	2 cut(s)	1000, 1141
BstNI	CCWGG	2 cut(s)	184, 1152
BstNSI	RCATGY	4 cut(s)	131, 217, 1013, 1023
BstSCI	CCNGG	3 cut(s)	182, 249, 1150
BstSLI	GKGCMC	1 cut(s)	144
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	1156
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	353, 1095
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	4 cut(s)	918, 924, 969, 1147
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	2 cut(s)	1011, 1021
CaiI	CAGNNNCTG	1 cut(s)	229
CciI	TCATGA	1 cut(s)	985
CfoI	GCGC	2 cut(s)	9, 189
Cfr13I	GGNCC	3 cut(s)	154, 180, 205
CseI	GACGC	2 cut(s)	206, 890
Csp6I	GTAC	2 cut(s)	313, 495
CviAII	CATG	8 cut(s)	128, 214, 580, 841, 986, 1010, 1020, 1051
CviQI	GTAC	2 cut(s)	313, 495
DdeI	CTNAG	9 cut(s)	57, 65, 136, 348, 406, 648, 732, 1014, 1197
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
Eam1104I	CTCTTC	3 cut(s)	681, 891, 918
EarI	CTCTTC	3 cut(s)	681, 891, 918
EciI	GGCGGA	1 cut(s)	1170
Ecl136II	GAGCTC	2 cut(s)	25, 77
Eco130I	CCWWGG	2 cut(s)	258, 1096
Eco24I	GRGCYC	2 cut(s)	27, 79
Eco31I	GGTCTC	1 cut(s)	259
Eco47I	GGWCC	3 cut(s)	154, 180, 205
Eco53kI	GAGCTC	2 cut(s)	25, 77
EcoICRI	GAGCTC	2 cut(s)	25, 77
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	2 cut(s)	182, 1150
EcoT14I	CCWWGG	2 cut(s)	258, 1096
EcoT22I	ATGCAT	1 cut(s)	1011
EcoT38I	GRGCYC	2 cut(s)	27, 79
ErhI	CCWWGG	2 cut(s)	258, 1096
FaeI	CATG	8 cut(s)	131, 217, 583, 844, 989, 1013, 1023, 1054
FalI	AAGNNNNNCTT	2 cut(s)	782, 814
FaqI	GGGAC	3 cut(s)	416, 590, 1126
FatI	CATG	8 cut(s)	127, 213, 579, 840, 985, 1009, 1019, 1050
FauI	CCCGC	1 cut(s)	948
Fnu4HI	GCNGC	1 cut(s)	1145
FokI	GGATG	4 cut(s)	925, 931, 976, 1134
FriOI	GRGCYC	2 cut(s)	27, 79
Fsp4HI	GCNGC	1 cut(s)	1145
FspBI	CTAG	3 cut(s)	80, 1056, 1207
GlaI	GCGC	2 cut(s)	8, 188
GluI	GCNGC	1 cut(s)	1145
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	353, 1095
HapII	CCGG	2 cut(s)	250, 1178
HgaI	GACGC	2 cut(s)	206, 890
HhaI	GCGC	2 cut(s)	9, 189
Hin1II	CATG	8 cut(s)	131, 217, 583, 844, 989, 1013, 1023, 1054
Hin6I	GCGC	2 cut(s)	7, 187
HinP1I	GCGC	2 cut(s)	7, 187
HinfI	GANTC	4 cut(s)	234, 1039, 1114, 1181
HpaII	CCGG	2 cut(s)	250, 1178
HphI	GGTGA	8 cut(s)	212, 296, 341, 515, 560, 572, 737, 1175
Hpy166II	GTNNAC	4 cut(s)	133, 142, 679, 846
Hpy188I	TCNGA	4 cut(s)	22, 58, 906, 1198
Hpy188III	TCNNGA	2 cut(s)	72, 986
Hpy8I	GTNNAC	4 cut(s)	133, 142, 679, 846
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	6 cut(s)	50, 175, 271, 784, 846, 1203
HpyCH4III	ACNGT	2 cut(s)	284, 425
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	9 cut(s)	142, 622, 664, 976, 1003, 1009, 1036, 1135, 1144
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1000, 1141
HpyF3I	CTNAG	9 cut(s)	57, 65, 136, 348, 406, 648, 732, 1014, 1197
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	8 cut(s)	131, 217, 583, 844, 989, 1013, 1023, 1054
HspAI	GCGC	2 cut(s)	7, 187
Kzo9I	GATC	1 cut(s)	246
LguI	GCTCTTC	1 cut(s)	891
LmnI	GCTCC	3 cut(s)	74, 124, 337
Lsp1109I	GCAGC	1 cut(s)	1156
LweI	GCATC	3 cut(s)	334, 990, 1156
MaeI	CTAG	3 cut(s)	80, 1056, 1207
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	5 cut(s)	160, 218, 822, 876, 1163
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	4 cut(s)	27, 79, 144, 649
MlyI	GAGTC	2 cut(s)	243, 1108
MmeI	TCCRAC	3 cut(s)	595, 636, 927
Mph1103I	ATGCAT	1 cut(s)	1011
MroXI	GAANNNNTTC	1 cut(s)	107
MspI	CCGG	2 cut(s)	250, 1178
MspR9I	CCNGG	3 cut(s)	184, 251, 1152
MvaI	CCWGG	2 cut(s)	184, 1152
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	1000, 1141
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	8 cut(s)	131, 217, 583, 844, 989, 1013, 1023, 1054
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	2 cut(s)	218, 1163
NsiI	ATGCAT	1 cut(s)	1011
NspI	RCATGY	4 cut(s)	131, 217, 1013, 1023
PaeI	GCATGC	2 cut(s)	1013, 1023
PagI	TCATGA	1 cut(s)	985
PciSI	GCTCTTC	1 cut(s)	891
PdmI	GAANNNNTTC	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	1039, 1181
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	1 cut(s)	1146
PleI	GAGTC	2 cut(s)	242, 1108
PpsI	GAGTC	2 cut(s)	242, 1108
PpuMI	RGGWCCY	1 cut(s)	154
Psp124BI	GAGCTC	2 cut(s)	27, 79
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	2 cut(s)	182, 1150
PspGI	CCWGG	2 cut(s)	182, 1150
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	3 cut(s)	154, 180, 205
PspPPI	RGGWCCY	1 cut(s)	154
PstNI	CAGNNNCTG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	246
RsaI	GTAC	2 cut(s)	314, 496
RsaNI	GTAC	2 cut(s)	313, 495
SacI	GAGCTC	2 cut(s)	27, 79
SapI	GCTCTTC	1 cut(s)	891
SatI	GCNGC	1 cut(s)	1145
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	3 cut(s)	154, 180, 205
SchI	GAGTC	2 cut(s)	243, 1108
ScrFI	CCNGG	3 cut(s)	184, 251, 1152
SduI	GDGCHC	4 cut(s)	27, 79, 144, 649
SfaNI	GCATC	3 cut(s)	334, 990, 1156
SinI	GGWCC	3 cut(s)	154, 180, 205
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SphI	GCATGC	2 cut(s)	1013, 1023
SsiI	CCGC	3 cut(s)	122, 955, 1155
SspI	AATATT	1 cut(s)	53
SspMI	CTAG	3 cut(s)	80, 1056, 1207
SstI	GAGCTC	2 cut(s)	27, 79
StyD4I	CCNGG	3 cut(s)	182, 249, 1150
StyI	CCWWGG	2 cut(s)	258, 1096
TaaI	ACNGT	2 cut(s)	284, 425
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	4 cut(s)	27, 872, 891, 1082
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	2 cut(s)	1039, 1181
TscAI	CASTG	1 cut(s)	299
TseFI	GTSAC	2 cut(s)	218, 1163
TseI	GCWGC	1 cut(s)	1144
Tsp45I	GTSAC	2 cut(s)	218, 1163
TspDTI	ATGAA	6 cut(s)	17, 465, 477, 909, 971, 1100
TspRI	CASTG	1 cut(s)	299
Van91I	CCANNNNNTGG	1 cut(s)	229
VneI	GTGCAC	1 cut(s)	140
VpaK11BI	GGWCC	3 cut(s)	154, 180, 205
XapI	RAATTY	5 cut(s)	107, 301, 978, 1128, 1138
XceI	RCATGY	4 cut(s)	131, 217, 1013, 1023
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	3 cut(s)	80, 1056, 1207
Zsp2I	ATGCAT	1 cut(s)	1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.