Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003279

Physical Location & Seq

Genomic Coordinates Forward (+)

26298058 .. 26300336

Gene Structure 2279 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002147

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGAAGCGCAAGAAATGGTCAGAGCTTGAAGAACAGACCCTTCTCATGAAGTATTCTGAGCTTCTCAGCTCTGGAGCTCTAGCCAAGCTCAAAACCCGTGAGAAAAAATTCAAGCCCATAGCGGAGCATGTTAACTTAGTGCACAACCTTGATGACCCTGTAACCTTCCCTTTCAAATGGTCCTGGCGCGACGTGTCAATCAAGGTCCAAAACATGCGCCACCAGTACCTGGGAGTCAAGCAGAAGATCCGGGTCTCCAAGGATGAGTTCAACTGGAAGGACGGTGAAAATCACTGGGAGAATTTCTTGAAGTACAAGGAAGTGTTTGGTGATGTGGAGCTTGATGGTAAGGGCAAGAGGTCATGTGAGAATGACAACTTTGATGTTTTTGGGGATTGTGGGGACTTAGGGTTTGGGATTGATTGTGAGGATTTAGAGGAAGAAGAAGATGAAGAAGAAGAACATTTGGAAGAGGAAGAAGAAGATGGTACTGGTGGTGATGACGATAATCGTGGCGAGGAATACCCAGTTGTTGAGTTTGGGGGTGAAAGGGAAATTGGGGACATGGGAATGGCTCAAAAAAGGAAATTGAGTAAGGTTGGATTGCATAAGAGGTTGGGGTTGATGAGTGCTCAGGTGTTGGACTTGCAGAATATGGTTGTGAAGAGGGAAGAGGGGAGGAGAGGGAGGGAGTGTAGGAGAGAGAAAGGTGAGGCTGAGAGAGAGGAAAGGGGGAAAGAAGTTGAGTTCAGGAGAGAGAAGAGAAGGAATGAGCAGGAGGACTCGTTAGAAGATAGAGAATTGGAGTTGCAAGAGAGAGAGGTCATGTGGACAAGAAGGGAGTTTGAAAAAAGGTTGAGGTTACAGGGGGAGTTTGATGAGGAGCGTCAGAGGAGGATGAGGATGGAGGAGAGGAGGGAGGAGGAGGAGTTGGAGTGGCGGGAGAGGATGGTAGGTTTGCAAATTCAGCATGAGAAGCAAATGATGCAAATGCATGCTGAGGCATGCCAGAACCAAATGCAGATTCTTGGGGTCATGGCTAGGTTTGTGTGTCAATTTTTTGGGTCAATGAATGATGGCCTTGGAGGTGGTTTAGGGACTCTGCCACCTCAAATTTTGCAGAATTTGCAGCATCCAGGTGGACTGGGTGACAATGGGAAGCCGGATTCCAATTCGCCTTCTGAGTTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

398

Amino Acids

46.81

Weight (kDa)

5.03

Isoelectric Point (pI)

61.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003279)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06071
malus_domestica	MD09G1261100.v1.1
prunus_persica	Prupe.3G158400_v2.0.a1
pyrus_communis	pycom09g17540
rosa_chinensis	RchiOBHm_Chr1g0333501 RchiOBHm_Chr1g0334211 RchiOBHm_Chr7g0221661
rosa_laevigata	RLG00000002147 RLG00000029549 RLG00000029550 RLG00000029599 RLG00000029600 RLG00000029601
rosa_multiflora	Rmu_sc0000494.1_g000002 Rmu_sc0000494.1_g000004 Rmu_sc0000494.1_g000017 Rmu_sc0002955.1_g000015 Rmu_sc0003435.1_g000020 Rmu_sc0005016.1_g000034 Rmu_sc0012130.1_g000001 Rmu_sc0028037.1_g000004
rosa_roxburghii	Rroxscaffold_2G00088180 Rroxscaffold_3G00238140 Rroxscaffold_4G00317400
rosa_rugosa	Rorug01G0109400 Rorug01G0109500 Rorug01G0110100 Rorug01G0110200 Rorug01G0110300 Rorug07G0202800
rosa_samantha	Rh1BG101600 Rh1CG126900 Rh1CG129800 Rh7AG343300 Rh7BG333400
rosa_wichuraiana	Rw0G003360 Rw7G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccII	CGCG	1 cut(s)	189
AciI	CCGC	2 cut(s)	122, 940
AclWI	GGATC	1 cut(s)	241
AcsI	RAATTY	5 cut(s)	107, 301, 963, 1113, 1123
AfaI	GTAC	3 cut(s)	227, 314, 490
AfiI	CCNNNNNNNGG	1 cut(s)	229
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	6 cut(s)	29, 112, 175, 271, 310, 848
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	3 cut(s)	182, 228, 1135
AjuI	GAANNNNNNNTTGG	6 cut(s)	251, 283, 540, 572, 1008, 1040
AluBI	AGCT	6 cut(s)	25, 61, 69, 77, 88, 340
AluI	AGCT	6 cut(s)	25, 61, 69, 77, 88, 340
Alw21I	GWGCWC	3 cut(s)	79, 144, 634
Alw26I	GTCTC	1 cut(s)	259
Alw44I	GTGCAC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	241
AlwNI	CAGNNNCTG	1 cut(s)	229
AoxI	GGCC	1 cut(s)	1078
ApaLI	GTGCAC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	1129
ApoI	RAATTY	5 cut(s)	107, 301, 963, 1113, 1123
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
Asp700I	GAANNNNTTC	1 cut(s)	107
AspLEI	GCGC	3 cut(s)	9, 189, 219
AspS9I	GGNCC	2 cut(s)	180, 205
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	6 cut(s)	296, 341, 509, 557, 722, 1160
AvaII	GGWCC	2 cut(s)	180, 205
BaeGI	GKGCMC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	79
Bbv12I	GWGCWC	3 cut(s)	79, 144, 634
BbvCI	CCTCAGC	1 cut(s)	999
BbvI	GCAGC	1 cut(s)	1141
BccI	CCATC	5 cut(s)	338, 479, 898, 943, 1070
BciT130I	CCWGG	3 cut(s)	184, 230, 1137
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	3 cut(s)	80, 1041, 1192
BisI	GCNGC	1 cut(s)	1130
BlsI	GCNGC	1 cut(s)	1131
Bme1390I	CCNGG	4 cut(s)	184, 230, 251, 1137
Bme18I	GGWCC	2 cut(s)	180, 205
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	180, 205
BmrFI	CCNGG	4 cut(s)	184, 230, 251, 1137
BmrI	ACTGGG	3 cut(s)	304, 521, 1154
BmsI	GCATC	2 cut(s)	975, 1141
BmuI	ACTGGG	3 cut(s)	304, 521, 1154
BpmI	CTGGAG	1 cut(s)	93
Bpu10I	CCTNAGC	2 cut(s)	633, 999
BpuMI	CCSGG	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	3 cut(s)	229, 258, 1081
BsaXI	ACNNNNNCTCC	8 cut(s)	679, 709, 770, 800, 914, 920, 944, 950
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	6 cut(s)	223, 278, 299, 496, 527, 1149
BseBI	CCWGG	3 cut(s)	184, 230, 1137
BseDI	CCNNGG	3 cut(s)	229, 258, 1081
BseGI	GGATG	5 cut(s)	268, 903, 909, 954, 1132
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	6 cut(s)	48, 79, 647, 708, 990, 1173
BseNI	ACTGG	6 cut(s)	223, 278, 299, 496, 527, 1149
BseRI	GAGGAG	8 cut(s)	694, 896, 907, 923, 928, 935, 938, 941
BseSI	GKGCMC	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	1141
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	1080
BsiHKAI	GWGCWC	3 cut(s)	79, 144, 634
BsiSI	CCGG	2 cut(s)	250, 1163
BslFI	GGGAC	3 cut(s)	416, 575, 1111
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	3 cut(s)	416, 575, 1111
BsnI	GGCC	1 cut(s)	1080
Bso31I	GGTCTC	1 cut(s)	259
Bsp1286I	GDGCHC	3 cut(s)	79, 144, 634
Bsp143I	GATC	1 cut(s)	246
BspACI	CCGC	2 cut(s)	122, 940
BspANI	GGCC	1 cut(s)	1080
BspCNI	CTCAG	6 cut(s)	49, 78, 646, 709, 991, 1174
BspFNI	CGCG	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	45
BspPI	GGATC	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	259
BsrI	ACTGG	6 cut(s)	223, 278, 299, 496, 527, 1149
BssECI	CCNNGG	3 cut(s)	229, 258, 1081
BssMI	GATC	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	258, 1081
Bst2UI	CCWGG	3 cut(s)	184, 230, 1137
Bst4CI	ACNGT	1 cut(s)	284
Bst6I	CTCTTC	4 cut(s)	465, 659, 666, 755
BstAPI	GCANNNNNTGC	2 cut(s)	985, 1126
BstC8I	GCNNGC	2 cut(s)	996, 1006
BstDEI	CTNAG	8 cut(s)	57, 65, 136, 406, 633, 717, 999, 1182
BstF5I	GGATG	5 cut(s)	268, 903, 909, 954, 1132
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	3 cut(s)	9, 189, 219
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	4 cut(s)	967, 976, 985, 1126
BstNI	CCWGG	3 cut(s)	184, 230, 1137
BstNSI	RCATGY	4 cut(s)	131, 217, 998, 1008
BstSCI	CCNGG	4 cut(s)	182, 228, 249, 1135
BstSLI	GKGCMC	1 cut(s)	144
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	1141
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	1080
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	5 cut(s)	268, 903, 909, 954, 1132
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	2 cut(s)	996, 1006
CaiI	CAGNNNCTG	1 cut(s)	229
CciI	TCATGA	1 cut(s)	45
CfoI	GCGC	3 cut(s)	9, 189, 219
Cfr13I	GGNCC	2 cut(s)	180, 205
CseI	GACGC	1 cut(s)	875
Csp6I	GTAC	3 cut(s)	226, 313, 489
CviQI	GTAC	3 cut(s)	226, 313, 489
DdeI	CTNAG	8 cut(s)	57, 65, 136, 406, 633, 717, 999, 1182
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
Eam1104I	CTCTTC	4 cut(s)	465, 659, 666, 755
EarI	CTCTTC	4 cut(s)	465, 659, 666, 755
Ecl136II	GAGCTC	1 cut(s)	77
Eco130I	CCWWGG	2 cut(s)	258, 1081
Eco24I	GRGCYC	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	259
Eco47I	GGWCC	2 cut(s)	180, 205
Eco53kI	GAGCTC	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	77
EcoRII	CCWGG	3 cut(s)	182, 228, 1135
EcoT14I	CCWWGG	2 cut(s)	258, 1081
EcoT22I	ATGCAT	1 cut(s)	996
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	2 cut(s)	258, 1081
FaqI	GGGAC	3 cut(s)	416, 575, 1111
FauI	CCCGC	1 cut(s)	933
Fnu4HI	GCNGC	1 cut(s)	1130
FokI	GGATG	5 cut(s)	275, 910, 916, 961, 1119
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	1130
FspBI	CTAG	3 cut(s)	80, 1041, 1192
GlaI	GCGC	3 cut(s)	8, 188, 218
GluI	GCNGC	1 cut(s)	1130
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	1080
HapII	CCGG	2 cut(s)	250, 1163
HgaI	GACGC	1 cut(s)	875
HhaI	GCGC	3 cut(s)	9, 189, 219
Hin6I	GCGC	3 cut(s)	7, 187, 217
HinP1I	GCGC	3 cut(s)	7, 187, 217
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	5 cut(s)	234, 782, 1024, 1099, 1166
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	2 cut(s)	250, 1163
HphI	GGTGA	6 cut(s)	296, 341, 509, 557, 722, 1160
Hpy166II	GTNNAC	4 cut(s)	133, 142, 831, 1142
Hpy188I	TCNGA	4 cut(s)	22, 58, 891, 1183
Hpy188III	TCNNGA	4 cut(s)	46, 72, 307, 751
Hpy8I	GTNNAC	4 cut(s)	133, 142, 831, 1142
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	6 cut(s)	50, 175, 271, 759, 831, 1188
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4IV	ACGT	1 cut(s)	192
HpyF10VI	GCNNNNNNNGC	4 cut(s)	967, 976, 985, 1126
HpyF3I	CTNAG	8 cut(s)	57, 65, 136, 406, 633, 717, 999, 1182
HpySE526I	ACGT	1 cut(s)	192
HspAI	GCGC	3 cut(s)	7, 187, 217
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	246
LmnI	GCTCC	4 cut(s)	74, 124, 337, 883
Lsp1109I	GCAGC	1 cut(s)	1141
LweI	GCATC	2 cut(s)	975, 1141
MaeI	CTAG	3 cut(s)	80, 1041, 1192
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	3 cut(s)	160, 861, 1148
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	3 cut(s)	79, 144, 634
MlyI	GAGTC	3 cut(s)	243, 776, 1093
MmeI	TCCRAC	3 cut(s)	580, 621, 912
Mph1103I	ATGCAT	1 cut(s)	996
MroXI	GAANNNNTTC	1 cut(s)	107
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	2 cut(s)	569, 1137
MspI	CCGG	2 cut(s)	250, 1163
MspR9I	CCNGG	4 cut(s)	184, 230, 251, 1137
MvaI	CCWGG	3 cut(s)	184, 230, 1137
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	4 cut(s)	967, 976, 985, 1126
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	1148
NsiI	ATGCAT	1 cut(s)	996
NspI	RCATGY	4 cut(s)	131, 217, 998, 1008
PaeI	GCATGC	2 cut(s)	998, 1008
PagI	TCATGA	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	1024, 1166
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	1 cut(s)	1131
PleI	GAGTC	3 cut(s)	242, 776, 1093
PpsI	GAGTC	3 cut(s)	242, 776, 1093
Psp124BI	GAGCTC	1 cut(s)	79
Psp6I	CCWGG	3 cut(s)	182, 228, 1135
PspGI	CCWGG	3 cut(s)	182, 228, 1135
PspPI	GGNCC	2 cut(s)	180, 205
PstNI	CAGNNNCTG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	246
RsaI	GTAC	3 cut(s)	227, 314, 490
RsaNI	GTAC	3 cut(s)	226, 313, 489
RseI	CAYNNNNRTG	2 cut(s)	569, 1137
SacI	GAGCTC	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	1 cut(s)	1130
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	2 cut(s)	180, 205
SchI	GAGTC	3 cut(s)	243, 776, 1093
ScrFI	CCNGG	4 cut(s)	184, 230, 251, 1137
SduI	GDGCHC	3 cut(s)	79, 144, 634
SfaNI	GCATC	2 cut(s)	975, 1141
SinI	GGWCC	2 cut(s)	180, 205
SmiMI	CAYNNNNRTG	2 cut(s)	569, 1137
SphI	GCATGC	2 cut(s)	998, 1008
SsiI	CCGC	2 cut(s)	122, 940
SspMI	CTAG	3 cut(s)	80, 1041, 1192
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	4 cut(s)	182, 228, 249, 1135
StyI	CCWWGG	2 cut(s)	258, 1081
TaaI	ACNGT	1 cut(s)	284
TaiI	ACGT	1 cut(s)	195
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	2 cut(s)	1024, 1166
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	1 cut(s)	299
TseFI	GTSAC	1 cut(s)	1148
TseI	GCWGC	1 cut(s)	1129
Tsp45I	GTSAC	1 cut(s)	1148
TspDTI	ATGAA	4 cut(s)	17, 62, 465, 1085
TspRI	CASTG	1 cut(s)	299
Van91I	CCANNNNNTGG	1 cut(s)	229
VneI	GTGCAC	1 cut(s)	140
VpaK11BI	GGWCC	2 cut(s)	180, 205
XapI	RAATTY	5 cut(s)	107, 301, 963, 1113, 1123
XceI	RCATGY	4 cut(s)	131, 217, 998, 1008
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	3 cut(s)	80, 1041, 1192
Zsp2I	ATGCAT	1 cut(s)	996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.