Rw0G003360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00114
OG0003279
Physical Location & Seq
Forward (+)
26354 .. 26926
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G003360.1

Sequence Viewer

Length: 573 bp
ATGCGCCACCAGTACCTGGGAGTCAAGCAGAAGTTCTGGGTCTCCAAGGACGAGTTCAACTGGAAGGATGGCGAAAATGACTGGGAGAATTTCTTGAAGTACAAGGAAGTGTTTGGTGATGTGGATCTTGATGGTAAGGGCAAGAGGTCGTGTGAAAATGGCAACTTTGATGTTTTTGGTGATTGTGGGGACTTAGGGTTTGGTATTGATTGTGAGGATTTAGAGGAAGAAGAAGAACATTTGGAAGAAGAAGAAGAAGATGGTACTGGTGGTGATGACGATAATCGTGGCGAGGAATTGGGTAAAACTGAAGTCGGTGAGTTTAGGGGTGAAAGGGAAATTGGGGACATGGGAATGGCTCAAAAAAGGAAATTGAGTGAGGTTGCATTGCATAGGAGGTTGGGGTTGATGATTGCTCAGGTGTTGGACTTGCAGAATATGGCTGTGAAGAGGAAGAGGGGAGGAGAGAGAGGGAGTGTAGGAGAGAGAAATGTGAGGCTGAGAGAGAGGAAAGGAGGAAAGAAGTTGAGTTTAGGAGAGAGAAGAGGAGGAATGAGCAGGAGGACTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.71

Weight (kDa)

5.1

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 16
AclWI GGATC 1 cut(s) 132
AcsI RAATTY 1 cut(s) 88
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 3 cut(s) 14, 101, 265
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 2 cut(s) 58, 97
AjnI CCWGG 1 cut(s) 15
AjuI GAANNNNNNNTTGG 4 cut(s) 38, 70, 324, 356
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 1 cut(s) 132
AlwNI CAGNNNCTG 1 cut(s) 16
ApoI RAATTY 1 cut(s) 88
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AspLEI GCGC 1 cut(s) 6
AsuHPI GGTGA 5 cut(s) 128, 191, 284, 329, 341
BccI CCATC 3 cut(s) 62, 125, 254
BciT130I CCWGG 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 46
Bme1390I CCNGG 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 17
BmrI ACTGGG 1 cut(s) 91
BmuI ACTGGG 1 cut(s) 91
Bpu10I CCTNAGC 1 cut(s) 417
BsaBI GATNNNNATC 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 2 cut(s) 16, 45
BsaXI ACNNNNNCTCC 1 cut(s) 553
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 4 cut(s) 10, 65, 86, 271
Bse3DI GCAATG 1 cut(s) 386
Bse8I GATNNNNATC 1 cut(s) 123
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 16, 45
BseGI GGATG 1 cut(s) 73
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMI GCAATG 1 cut(s) 386
BseMII CTCAG 2 cut(s) 431, 491
BseNI ACTGG 4 cut(s) 10, 65, 86, 271
BseRI GAGGAG 2 cut(s) 477, 561
BslFI GGGAC 2 cut(s) 203, 359
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 1 cut(s) 46
BsmFI GGGAC 2 cut(s) 203, 359
Bso31I GGTCTC 1 cut(s) 46
Bsp143I GATC 1 cut(s) 124
BspCNI CTCAG 2 cut(s) 430, 492
BspPI GGATC 1 cut(s) 132
BspTNI GGTCTC 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 386
BsrI ACTGG 4 cut(s) 10, 65, 86, 271
BssECI CCNNGG 2 cut(s) 16, 45
BssMI GATC 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 17
Bst6I CTCTTC 3 cut(s) 443, 449, 538
BstDEI CTNAG 3 cut(s) 193, 417, 500
BstF5I GGATG 1 cut(s) 73
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 1 cut(s) 124
BstNI CCWGG 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 15
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BtsCI GGATG 1 cut(s) 73
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 1 cut(s) 6
Csp6I GTAC 3 cut(s) 13, 100, 264
CviAII CATG 1 cut(s) 349
CviJI RGCY 3 cut(s) 359, 443, 499
CviKI_1 RGCY 3 cut(s) 359, 443, 499
CviQI GTAC 3 cut(s) 13, 100, 264
DdeI CTNAG 3 cut(s) 193, 417, 500
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
Eam1104I CTCTTC 3 cut(s) 443, 449, 538
EarI CTCTTC 3 cut(s) 443, 449, 538
Eco130I CCWWGG 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 330
EcoRII CCWGG 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 352
FaiI YATR 3 cut(s) 350, 393, 440
FaqI GGGAC 2 cut(s) 203, 359
FatI CATG 1 cut(s) 348
FokI GGATG 1 cut(s) 80
GlaI GCGC 1 cut(s) 5
HhaI GCGC 1 cut(s) 6
Hin1II CATG 1 cut(s) 352
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 1 cut(s) 21
HphI GGTGA 5 cut(s) 128, 191, 284, 329, 341
Hpy188III TCNNGA 2 cut(s) 94, 128
HpyAV CCTTC 1 cut(s) 58
HpyCH4V TGCA 3 cut(s) 386, 391, 433
HpyF3I CTNAG 3 cut(s) 193, 417, 500
Hsp92II CATG 1 cut(s) 352
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 1 cut(s) 124
LpnPI CCDG 9 cut(s) 2, 22, 23, 29, 46, 67, 252, 404, 544
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MflI RGATCY 1 cut(s) 124
MluCI AATT 4 cut(s) 88, 296, 339, 371
MlyI GAGTC 1 cut(s) 30
MmeI TCCRAC 1 cut(s) 405
MslI CAYNNNNRTG 1 cut(s) 353
MspR9I CCNGG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 17
NdeII GATC 1 cut(s) 124
NlaIII CATG 1 cut(s) 352
PflMI CCANNNNNTGG 1 cut(s) 16
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 3 cut(s) 14, 101, 265
RsaNI GTAC 3 cut(s) 13, 100, 264
RseI CAYNNNNRTG 1 cut(s) 353
Sau3AI GATC 1 cut(s) 124
SchI GAGTC 1 cut(s) 30
ScrFI CCNGG 1 cut(s) 17
SetI ASST 5 cut(s) 18, 149, 384, 401, 423
SmiMI CAYNNNNRTG 1 cut(s) 353
Sse9I AATT 4 cut(s) 88, 296, 339, 371
StyD4I CCNGG 1 cut(s) 15
StyI CCWWGG 1 cut(s) 45
TasI AATT 4 cut(s) 88, 296, 339, 371
TatI WGTACW 1 cut(s) 99
Van91I CCANNNNNTGG 1 cut(s) 16
XapI RAATTY 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.