Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003279

Physical Location & Seq

Genomic Coordinates Forward (+)

26330024 .. 26333550

Gene Structure 3527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00238140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGAAGCGCAAGAAATGGTCAGAGCTTGAAGAACAGACCCTTCTCACGAAGTATTCTGAGCTTCTCAGCTCTGGAGCTCTAGCCAAGCTCAAAACCCGTGAGAAAAAATTCAAGCCCATAGCGGAGCATGTTAACTTAGTGCACAACCTTGACGACCCTGTAACCTTCCCTTTCAAATGGTCCTGGCGCGACGTGTCAATCAAGGTCCAAAACATGCGCCACCAGTACCTGGGAGTCAAGCAGAAGATCCAGGTCTCCAAGGACGAGTTCAACTGGAAGGATGGTGAAAATCACTGGGAGAATTTCTTGAAGTACAAGGAAGTGTTTGGTGATGTGGAGCTTGATGGTAAGGGCAAGAGGTCGTGTGAGAATGACAACTTTGATGTTTTTGGGGATTGTGGGGACTTAGGGTTTGGGATTGATTGTGAGGATTTAGAGGAAGAAGAAGATGAAGAAGAAGAAGAACATTTGGAAGAGGAAGAAGAAGATGGTACTGGTGGTGATGACGATAATCGTGGCGAGGAATACCCAGTTGGCGAGTTTGGGGGTGAAAGGGGAAATTGGGGACATGGGAATGGCTCAAAAAGGAAATTGAGTAAGGTTGGATTGCATAAGAGGTTGGGGTTGATGAGTGCTCAGGTGTTGGACTTGCAGAATATGGTTGTGAAGAGGGAAGAGGGGAGGAGAGAGAGGGAGTGTAGGAGAGAGAAAGGTGAGGCTGAGAGAGAGGAAAGGAGGAAAGAACTTGAGTTCAGGAGAGAGAAGAGGAGGAATGAGCAGGAGGACTTGTTAGAAGATAGAGAATTGGAGTTGCAAGAGAGAGAGGTCATGTGGACAAGAAGGGAGTTTGAAAAAAGGTTGAGGTTACAGGGGGAGTTTGATGAGGAGCGTCAGAGGAGGATGAGGATGGAGGAGAGGAGGGAGGAGGAGGAGTTGGAGTGGCGGGAGAGGATGATGGGTTTGCAAATTCAGCATGAGAAGCAAATGATGCAAATGCATGCTGAGGCATGCCAGAACCAAATGCAGATTCTTGGGGTCATGGCTAGGTTTGTTTGTCAATTTTTTGGGTCAATGAATGATGGCCTTGGAGGTGGTTTAGGGACTCTACCACCTCAAATTTTGCAGAATTTGCAGCATCCAGGTGGACTTGGTGACAATGGGAAGCCGGATTCCAATTCGCCTTCTGAGTTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

398

Amino Acids

47.02

Weight (kDa)

5.07

Isoelectric Point (pI)

60.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003279)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06071
malus_domestica	MD09G1261100.v1.1
prunus_persica	Prupe.3G158400_v2.0.a1
pyrus_communis	pycom09g17540
rosa_chinensis	RchiOBHm_Chr1g0333501 RchiOBHm_Chr1g0334211 RchiOBHm_Chr7g0221661
rosa_laevigata	RLG00000002147 RLG00000029549 RLG00000029550 RLG00000029599 RLG00000029600 RLG00000029601
rosa_multiflora	Rmu_sc0000494.1_g000002 Rmu_sc0000494.1_g000004 Rmu_sc0000494.1_g000017 Rmu_sc0002955.1_g000015 Rmu_sc0003435.1_g000020 Rmu_sc0005016.1_g000034 Rmu_sc0012130.1_g000001 Rmu_sc0028037.1_g000004
rosa_roxburghii	Rroxscaffold_2G00088180 Rroxscaffold_3G00238140 Rroxscaffold_4G00317400
rosa_rugosa	Rorug01G0109400 Rorug01G0109500 Rorug01G0110100 Rorug01G0110200 Rorug01G0110300 Rorug07G0202800
rosa_samantha	Rh1BG101600 Rh1CG126900 Rh1CG129800 Rh7AG343300 Rh7BG333400
rosa_wichuraiana	Rw0G003360 Rw7G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccII	CGCG	1 cut(s)	189
AciI	CCGC	2 cut(s)	122, 943
AclWI	GGATC	1 cut(s)	241
AcsI	RAATTY	5 cut(s)	107, 301, 966, 1116, 1126
AfaI	GTAC	3 cut(s)	227, 314, 493
AfiI	CCNNNNNNNGG	1 cut(s)	229
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	6 cut(s)	29, 112, 175, 271, 310, 851
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	4 cut(s)	182, 228, 249, 1138
AjuI	GAANNNNNNNTTGG	6 cut(s)	251, 283, 516, 548, 1011, 1043
AluBI	AGCT	6 cut(s)	25, 61, 69, 77, 88, 340
AluI	AGCT	6 cut(s)	25, 61, 69, 77, 88, 340
Alw21I	GWGCWC	3 cut(s)	79, 144, 637
Alw26I	GTCTC	1 cut(s)	259
Alw44I	GTGCAC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	241
AlwNI	CAGNNNCTG	1 cut(s)	229
AoxI	GGCC	1 cut(s)	1081
ApaLI	GTGCAC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	1132
ApoI	RAATTY	5 cut(s)	107, 301, 966, 1116, 1126
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
Asp700I	GAANNNNTTC	1 cut(s)	107
AspLEI	GCGC	3 cut(s)	9, 189, 219
AspS9I	GGNCC	2 cut(s)	180, 205
AsuHPI	GGTGA	6 cut(s)	296, 341, 512, 560, 725, 1163
AvaII	GGWCC	2 cut(s)	180, 205
BaeGI	GKGCMC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	79
Bbv12I	GWGCWC	3 cut(s)	79, 144, 637
BbvCI	CCTCAGC	1 cut(s)	1002
BbvI	GCAGC	1 cut(s)	1144
BccI	CCATC	6 cut(s)	275, 338, 482, 901, 949, 1073
BciT130I	CCWGG	4 cut(s)	184, 230, 251, 1140
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	3 cut(s)	80, 1044, 1195
BisI	GCNGC	1 cut(s)	1133
BlsI	GCNGC	1 cut(s)	1134
Bme1390I	CCNGG	4 cut(s)	184, 230, 251, 1140
Bme18I	GGWCC	2 cut(s)	180, 205
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	180, 205
BmrFI	CCNGG	4 cut(s)	184, 230, 251, 1140
BmrI	ACTGGG	2 cut(s)	304, 524
BmsI	GCATC	2 cut(s)	978, 1144
BmuI	ACTGGG	2 cut(s)	304, 524
BpmI	CTGGAG	1 cut(s)	93
Bpu10I	CCTNAGC	2 cut(s)	636, 1002
BpuEI	CTTGAG	1 cut(s)	767
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	3 cut(s)	229, 258, 1084
BsaXI	ACNNNNNCTCC	6 cut(s)	773, 803, 917, 923, 947, 953
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	5 cut(s)	223, 278, 299, 499, 530
BseBI	CCWGG	4 cut(s)	184, 230, 251, 1140
BseDI	CCNNGG	3 cut(s)	229, 258, 1084
BseGI	GGATG	5 cut(s)	286, 906, 912, 957, 1135
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	6 cut(s)	48, 79, 650, 711, 993, 1176
BseNI	ACTGG	5 cut(s)	223, 278, 299, 499, 530
BseRI	GAGGAG	9 cut(s)	697, 781, 899, 910, 926, 931, 938, 941, 944
BseSI	GKGCMC	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	1144
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	1083
BsiHKAI	GWGCWC	3 cut(s)	79, 144, 637
BsiSI	CCGG	1 cut(s)	1166
BslFI	GGGAC	3 cut(s)	416, 579, 1114
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	3 cut(s)	416, 579, 1114
BsnI	GGCC	1 cut(s)	1083
Bso31I	GGTCTC	1 cut(s)	259
Bsp1286I	GDGCHC	3 cut(s)	79, 144, 637
Bsp143I	GATC	1 cut(s)	246
BspACI	CCGC	2 cut(s)	122, 943
BspANI	GGCC	1 cut(s)	1083
BspCNI	CTCAG	6 cut(s)	49, 78, 649, 712, 994, 1177
BspFNI	CGCG	1 cut(s)	189
BspPI	GGATC	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	259
BsrI	ACTGG	5 cut(s)	223, 278, 299, 499, 530
BssECI	CCNNGG	3 cut(s)	229, 258, 1084
BssMI	GATC	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	258, 1084
Bst2UI	CCWGG	4 cut(s)	184, 230, 251, 1140
Bst6I	CTCTTC	4 cut(s)	468, 662, 669, 758
BstAPI	GCANNNNNTGC	2 cut(s)	988, 1129
BstC8I	GCNNGC	2 cut(s)	999, 1009
BstDEI	CTNAG	8 cut(s)	57, 65, 136, 406, 636, 720, 1002, 1185
BstF5I	GGATG	5 cut(s)	286, 906, 912, 957, 1135
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	3 cut(s)	9, 189, 219
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	4 cut(s)	970, 979, 988, 1129
BstNI	CCWGG	4 cut(s)	184, 230, 251, 1140
BstNSI	RCATGY	4 cut(s)	131, 217, 1001, 1011
BstSCI	CCNGG	4 cut(s)	182, 228, 249, 1138
BstSLI	GKGCMC	1 cut(s)	144
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	1144
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	1083
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	5 cut(s)	286, 906, 912, 957, 1135
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	2 cut(s)	999, 1009
CaiI	CAGNNNCTG	1 cut(s)	229
CfoI	GCGC	3 cut(s)	9, 189, 219
Cfr13I	GGNCC	2 cut(s)	180, 205
CseI	GACGC	1 cut(s)	878
Csp6I	GTAC	3 cut(s)	226, 313, 492
CviAII	CATG	8 cut(s)	128, 214, 569, 829, 974, 998, 1008, 1039
CviQI	GTAC	3 cut(s)	226, 313, 492
DdeI	CTNAG	8 cut(s)	57, 65, 136, 406, 636, 720, 1002, 1185
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
Eam1104I	CTCTTC	4 cut(s)	468, 662, 669, 758
EarI	CTCTTC	4 cut(s)	468, 662, 669, 758
Ecl136II	GAGCTC	1 cut(s)	77
Eco130I	CCWWGG	2 cut(s)	258, 1084
Eco24I	GRGCYC	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	259
Eco47I	GGWCC	2 cut(s)	180, 205
Eco53kI	GAGCTC	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	77
EcoRII	CCWGG	4 cut(s)	182, 228, 249, 1138
EcoT14I	CCWWGG	2 cut(s)	258, 1084
EcoT22I	ATGCAT	1 cut(s)	999
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	2 cut(s)	258, 1084
FaeI	CATG	8 cut(s)	131, 217, 572, 832, 977, 1001, 1011, 1042
FaqI	GGGAC	3 cut(s)	416, 579, 1114
FatI	CATG	8 cut(s)	127, 213, 568, 828, 973, 997, 1007, 1038
FauI	CCCGC	1 cut(s)	936
Fnu4HI	GCNGC	1 cut(s)	1133
FokI	GGATG	5 cut(s)	293, 913, 919, 964, 1122
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	1133
FspBI	CTAG	3 cut(s)	80, 1044, 1195
GlaI	GCGC	3 cut(s)	8, 188, 218
GluI	GCNGC	1 cut(s)	1133
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	1083
HapII	CCGG	1 cut(s)	1166
HgaI	GACGC	1 cut(s)	878
HhaI	GCGC	3 cut(s)	9, 189, 219
Hin1II	CATG	8 cut(s)	131, 217, 572, 832, 977, 1001, 1011, 1042
Hin6I	GCGC	3 cut(s)	7, 187, 217
HinP1I	GCGC	3 cut(s)	7, 187, 217
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	4 cut(s)	234, 1027, 1102, 1169
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	1166
HphI	GGTGA	6 cut(s)	296, 341, 512, 560, 725, 1163
Hpy166II	GTNNAC	4 cut(s)	133, 142, 834, 1145
Hpy188I	TCNGA	4 cut(s)	22, 58, 894, 1186
Hpy188III	TCNNGA	4 cut(s)	46, 72, 307, 754
Hpy8I	GTNNAC	4 cut(s)	133, 142, 834, 1145
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	5 cut(s)	50, 175, 271, 834, 1191
HpyCH4IV	ACGT	1 cut(s)	192
HpyF10VI	GCNNNNNNNGC	4 cut(s)	970, 979, 988, 1129
HpyF3I	CTNAG	8 cut(s)	57, 65, 136, 406, 636, 720, 1002, 1185
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	8 cut(s)	131, 217, 572, 832, 977, 1001, 1011, 1042
HspAI	GCGC	3 cut(s)	7, 187, 217
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	246
LmnI	GCTCC	4 cut(s)	74, 124, 337, 886
Lsp1109I	GCAGC	1 cut(s)	1144
LweI	GCATC	2 cut(s)	978, 1144
MaeI	CTAG	3 cut(s)	80, 1044, 1195
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	3 cut(s)	160, 864, 1151
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	3 cut(s)	79, 144, 637
MlyI	GAGTC	2 cut(s)	243, 1096
MmeI	TCCRAC	3 cut(s)	583, 624, 915
Mph1103I	ATGCAT	1 cut(s)	999
MroXI	GAANNNNTTC	1 cut(s)	107
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	2 cut(s)	573, 1140
MspI	CCGG	1 cut(s)	1166
MspR9I	CCNGG	4 cut(s)	184, 230, 251, 1140
MvaI	CCWGG	4 cut(s)	184, 230, 251, 1140
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	4 cut(s)	970, 979, 988, 1129
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	8 cut(s)	131, 217, 572, 832, 977, 1001, 1011, 1042
NmuCI	GTSAC	1 cut(s)	1151
NsiI	ATGCAT	1 cut(s)	999
NspI	RCATGY	4 cut(s)	131, 217, 1001, 1011
PaeI	GCATGC	2 cut(s)	1001, 1011
PdmI	GAANNNNTTC	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	1027, 1169
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	1 cut(s)	1134
PleI	GAGTC	2 cut(s)	242, 1096
PpsI	GAGTC	2 cut(s)	242, 1096
Psp124BI	GAGCTC	1 cut(s)	79
Psp6I	CCWGG	4 cut(s)	182, 228, 249, 1138
PspGI	CCWGG	4 cut(s)	182, 228, 249, 1138
PspPI	GGNCC	2 cut(s)	180, 205
PstNI	CAGNNNCTG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	246
RsaI	GTAC	3 cut(s)	227, 314, 493
RsaNI	GTAC	3 cut(s)	226, 313, 492
RseI	CAYNNNNRTG	2 cut(s)	573, 1140
SacI	GAGCTC	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	1 cut(s)	1133
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	2 cut(s)	180, 205
SchI	GAGTC	2 cut(s)	243, 1096
ScrFI	CCNGG	4 cut(s)	184, 230, 251, 1140
SduI	GDGCHC	3 cut(s)	79, 144, 637
SfaNI	GCATC	2 cut(s)	978, 1144
SinI	GGWCC	2 cut(s)	180, 205
SmiMI	CAYNNNNRTG	2 cut(s)	573, 1140
SmlI	CTYRAG	1 cut(s)	746
SmoI	CTYRAG	1 cut(s)	746
SphI	GCATGC	2 cut(s)	1001, 1011
SsiI	CCGC	2 cut(s)	122, 943
SspMI	CTAG	3 cut(s)	80, 1044, 1195
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	4 cut(s)	182, 228, 249, 1138
StyI	CCWWGG	2 cut(s)	258, 1084
TaiI	ACGT	1 cut(s)	195
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	2 cut(s)	1027, 1169
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	1 cut(s)	299
TseFI	GTSAC	1 cut(s)	1151
TseI	GCWGC	1 cut(s)	1132
Tsp45I	GTSAC	1 cut(s)	1151
TspDTI	ATGAA	3 cut(s)	17, 465, 1088
TspRI	CASTG	1 cut(s)	299
Van91I	CCANNNNNTGG	1 cut(s)	229
VneI	GTGCAC	1 cut(s)	140
VpaK11BI	GGWCC	2 cut(s)	180, 205
XapI	RAATTY	5 cut(s)	107, 301, 966, 1116, 1126
XceI	RCATGY	4 cut(s)	131, 217, 1001, 1011
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	3 cut(s)	80, 1044, 1195
Zsp2I	ATGCAT	1 cut(s)	999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.