Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003279

Physical Location & Seq

Genomic Coordinates Forward (+)

18040734 .. 18045942

Gene Structure 5209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17540.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGAAGCGCAAGAAATGGTCGGAGCTCGAAGAACAGACCCTTCTCACCAACTACTCGGACCTCCACAGCTCTGGAGCTCTAGCCAAGCTCAAAACCCGCGAGAAAAAGTTCAAGCCCATAGCCGACCACGTGAACTCGGCGCACCACCTCCGCGACCCAGTGACCTTTCCGTTCCGGTGGTCCTGGCGCGACGTCTCAATCAAGGTGCAGAACATGCGGCACCAGTACCTGGGCGTGAAGCAGAAGATCCGGGTCTCCAAGGACGAATTCAACTGGAAAGACGGCGAAAACCACTGGGAAAATTTCTTGAGGTACAAGGAAGTGTTTGGAGATGTGGAGCTTGATGTTAGGGGGAAAAGGGGGTGTGAAAGTGAGAACCTTGATGTTTTTGGGGATTGTGGGGATTTGGGGTTTGGGATTGACTGTGACGATTTGGAAGAAGAAGAAGACGATGAAGATGGAGTGCAATTGGAAGAAGGTGAAGATGGAGAAGAAGAGGAAAGTAGTGGCGGCGGCGAAGGCGACAATGGTGTTGAGGAATTCGGTAGGAGTGAAGGTGGTGAACTTGTGGGTGAGAGGGCAATTGGGGAAGTGGGTTTTGCGCAGAAAAGGAAATTGGGTAAGGTTGGATTGCATAGGAGGTTGGGGTTGGTGAGTGCACAAGTTTTGGATTTGAGGGATGTAGTGGTGAAGAGGGAAGAGAGGAGGAGAGAGAGGGAGTGTAGGAGAGAGAAAAGTGAGGTTGAGAGAGAGGAAAAGAGGAAAGAAATTGAGTTTAGGAGAGAGAAAAGAAGGAATGAGAGGGAGGACTGGTTGGAGGATAGAGAATTGGAGTTAGAAGAGAGGGAGGTGACGTGGGCAAGAAGAGAATTCGACAAAAGGTTGAGGATGGAGAGGGAGCTGGATGATGAGCGACGGAGGAGGATGAGGATGGAGGAGAAGAGGGAGGAGGAGGAGTTGGAGTGGAGGGAAAGGATGGTGGGTTTGCAAATTGAGCATGAGAAGCAAATGATGCAAATGCATGCTGAGGCGTGCCATAATCAAATGCAGATTCTTGGGGTCATGGCTAGGCTAGTTTGTCAATCTTTTGGGTCTGTGAACGATGGGCTGGGAGGCGGTTTAGGCAGTGAGAATTCTGAAATTTTAAATTGGCGGTCGTTTGCCCTTCAGTTCTCTGCGCTGTCGTTATTTGGAACTTTACATGTTCTGCTGTCAGTAACTAGTTGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

411

Amino Acids

48.22

Weight (kDa)

5.21

Isoelectric Point (pI)

63.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003279)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06071
malus_domestica	MD09G1261100.v1.1
prunus_persica	Prupe.3G158400_v2.0.a1
pyrus_communis	pycom09g17540
rosa_chinensis	RchiOBHm_Chr1g0333501 RchiOBHm_Chr1g0334211 RchiOBHm_Chr7g0221661
rosa_laevigata	RLG00000002147 RLG00000029549 RLG00000029550 RLG00000029599 RLG00000029600 RLG00000029601
rosa_multiflora	Rmu_sc0000494.1_g000002 Rmu_sc0000494.1_g000004 Rmu_sc0000494.1_g000017 Rmu_sc0002955.1_g000015 Rmu_sc0003435.1_g000020 Rmu_sc0005016.1_g000034 Rmu_sc0012130.1_g000001 Rmu_sc0028037.1_g000004
rosa_roxburghii	Rroxscaffold_2G00088180 Rroxscaffold_3G00238140 Rroxscaffold_4G00317400
rosa_rugosa	Rorug01G0109400 Rorug01G0109500 Rorug01G0110100 Rorug01G0110200 Rorug01G0110300 Rorug07G0202800
rosa_samantha	Rh1BG101600 Rh1CG126900 Rh1CG129800 Rh7AG343300 Rh7BG333400
rosa_wichuraiana	Rw0G003360 Rw7G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	195
Acc16I	TGCGCA	1 cut(s)	603
AccB1I	GGYRCC	1 cut(s)	219
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccII	CGCG	3 cut(s)	99, 153, 189
AciI	CCGC	7 cut(s)	97, 151, 217, 510, 513, 1116, 1153
AclWI	GGATC	1 cut(s)	241
AcsI	RAATTY	6 cut(s)	266, 301, 539, 869, 1132, 1140
AcuI	CTGAAG	1 cut(s)	1151
AcvI	CACGTG	1 cut(s)	130
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	2 cut(s)	227, 314
AfiI	CCNNNNNNNGG	1 cut(s)	229
AflIII	ACRYGT	1 cut(s)	1201
AgsI	TTSAA	2 cut(s)	112, 271
AhlI	ACTAGT	1 cut(s)	1220
AjiI	CACGTC	1 cut(s)	855
AjnI	CCWGG	2 cut(s)	182, 228
AjuI	GAANNNNNNNTTGG	4 cut(s)	251, 283, 599, 631
AluBI	AGCT	6 cut(s)	25, 69, 77, 88, 340, 901
AluI	AGCT	6 cut(s)	25, 69, 77, 88, 340, 901
Alw21I	GWGCWC	3 cut(s)	27, 79, 661
Alw26I	GTCTC	2 cut(s)	199, 259
Alw44I	GTGCAC	1 cut(s)	657
AlwI	GGATC	1 cut(s)	241
AlwNI	CAGNNNCTG	1 cut(s)	229
ApaLI	GTGCAC	1 cut(s)	657
ApoI	RAATTY	6 cut(s)	266, 301, 539, 869, 1132, 1140
Asp700I	GAANNNNTTC	1 cut(s)	107
AspLEI	GCGC	5 cut(s)	9, 142, 189, 604, 1180
AspS9I	GGNCC	2 cut(s)	58, 180
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	7 cut(s)	37, 491, 572, 584, 664, 700, 862
AvaII	GGWCC	2 cut(s)	58, 180
BaeGI	GKGCMC	1 cut(s)	661
BanI	GGYRCC	1 cut(s)	219
BanII	GRGCYC	2 cut(s)	27, 79
BbrPI	CACGTG	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	453
Bbv12I	GWGCWC	3 cut(s)	27, 79, 661
BbvCI	CCTCAGC	1 cut(s)	1026
BccI	CCATC	6 cut(s)	452, 479, 883, 925, 970, 1097
BceAI	ACGGC	1 cut(s)	298
BciT130I	CCWGG	2 cut(s)	184, 230
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	2 cut(s)	199, 259
BcuI	ACTAGT	1 cut(s)	1220
BfaI	CTAG	4 cut(s)	80, 1068, 1073, 1221
BisI	GCNGC	3 cut(s)	218, 511, 514
BlsI	GCNGC	3 cut(s)	219, 512, 515
Bme1390I	CCNGG	3 cut(s)	184, 230, 251
Bme18I	GGWCC	2 cut(s)	58, 180
BmgBI	CACGTC	1 cut(s)	855
BmgT120I	GGNCC	2 cut(s)	58, 180
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	3 cut(s)	184, 230, 251
BmrI	ACTGGG	2 cut(s)	152, 304
BmsI	GCATC	1 cut(s)	1002
BmuI	ACTGGG	2 cut(s)	152, 304
BpiI	GAAGAC	1 cut(s)	453
BpmI	CTGGAG	1 cut(s)	93
Bpu10I	CCTNAGC	1 cut(s)	1026
BpuEI	CTTGAG	1 cut(s)	328
BpuMI	CCSGG	1 cut(s)	251
BsaAI	YACGTR	1 cut(s)	130
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	2 cut(s)	229, 258
BsaWI	WCCGGW	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	5 cut(s)	158, 223, 278, 299, 815
BseBI	CCWGG	2 cut(s)	184, 230
BseDI	CCNNGG	2 cut(s)	229, 258
BseGI	GGATG	6 cut(s)	685, 894, 910, 930, 936, 981
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	1017
BseNI	ACTGG	5 cut(s)	158, 223, 278, 299, 815
BseRI	GAGGAG	7 cut(s)	718, 721, 934, 950, 962, 965, 968
BseSI	GKGCMC	1 cut(s)	661
BseYI	CCCAGC	1 cut(s)	1108
BsgI	GTGCAG	1 cut(s)	227
Bsh1236I	CGCG	3 cut(s)	99, 153, 189
Bsh1285I	CGRYCG	1 cut(s)	1157
BshNI	GGYRCC	1 cut(s)	219
BsiEI	CGRYCG	1 cut(s)	1157
BsiHKAI	GWGCWC	3 cut(s)	27, 79, 661
BsiSI	CCGG	2 cut(s)	175, 250
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	2 cut(s)	199, 259
BsmBI	CGTCTC	1 cut(s)	199
Bso31I	GGTCTC	1 cut(s)	259
Bsp1286I	GDGCHC	3 cut(s)	27, 79, 661
Bsp143I	GATC	1 cut(s)	246
BspACI	CCGC	7 cut(s)	97, 151, 217, 510, 513, 1116, 1153
BspCNI	CTCAG	1 cut(s)	1018
BspFNI	CGCG	3 cut(s)	99, 153, 189
BspLI	GGNNCC	1 cut(s)	221
BspPI	GGATC	1 cut(s)	241
BspT107I	GGYRCC	1 cut(s)	219
BspTNI	GGTCTC	1 cut(s)	259
BsrI	ACTGG	5 cut(s)	158, 223, 278, 299, 815
BssECI	CCNNGG	2 cut(s)	229, 258
BssMI	GATC	1 cut(s)	246
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	258
Bst2UI	CCWGG	2 cut(s)	184, 230
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	6 cut(s)	489, 686, 693, 834, 859, 935
BstACI	GRCGYC	1 cut(s)	192
BstAPI	GCANNNNNTGC	2 cut(s)	214, 1012
BstBAI	YACGTR	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	1023, 1033
BstDEI	CTNAG	1 cut(s)	1026
BstF5I	GGATG	6 cut(s)	685, 894, 910, 930, 936, 981
BstFNI	CGCG	3 cut(s)	99, 153, 189
BstHHI	GCGC	5 cut(s)	9, 142, 189, 604, 1180
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	2 cut(s)	199, 259
BstMBI	GATC	1 cut(s)	246
BstMCI	CGRYCG	1 cut(s)	1157
BstMWI	GCNNNNNNNGC	6 cut(s)	214, 519, 994, 1003, 1012, 1122
BstNI	CCWGG	2 cut(s)	184, 230
BstNSI	RCATGY	3 cut(s)	217, 1025, 1205
BstSCI	CCNGG	3 cut(s)	182, 228, 249
BstSLI	GKGCMC	1 cut(s)	661
BstUI	CGCG	3 cut(s)	99, 153, 189
BstV2I	GAAGAC	1 cut(s)	453
BstX2I	RGATCY	1 cut(s)	246
BstXI	CCANNNNNNTGG	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	246
BtrI	CACGTC	1 cut(s)	855
BtsCI	GGATG	6 cut(s)	685, 894, 910, 930, 936, 981
BtsI	GCAGTG	1 cut(s)	1132
BtsIMutI	CAGTG	3 cut(s)	165, 292, 1132
Cac8I	GCNNGC	2 cut(s)	1023, 1033
CaiI	CAGNNNCTG	1 cut(s)	229
CfoI	GCGC	5 cut(s)	9, 142, 189, 604, 1180
Cfr13I	GGNCC	2 cut(s)	58, 180
Csp6I	GTAC	2 cut(s)	226, 313
CviAII	CATG	5 cut(s)	214, 998, 1022, 1063, 1202
CviQI	GTAC	2 cut(s)	226, 313
DdeI	CTNAG	1 cut(s)	1026
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
DraI	TTTAAA	1 cut(s)	1146
Eam1104I	CTCTTC	6 cut(s)	489, 686, 693, 834, 859, 935
EarI	CTCTTC	6 cut(s)	489, 686, 693, 834, 859, 935
Ecl136II	GAGCTC	2 cut(s)	25, 77
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	2 cut(s)	27, 79
Eco31I	GGTCTC	1 cut(s)	259
Eco47I	GGWCC	2 cut(s)	58, 180
Eco53kI	GAGCTC	2 cut(s)	25, 77
Eco57I	CTGAAG	1 cut(s)	1151
Eco72I	CACGTG	1 cut(s)	130
EcoICRI	GAGCTC	2 cut(s)	25, 77
EcoRI	GAATTC	4 cut(s)	266, 539, 869, 1132
EcoRII	CCWGG	2 cut(s)	182, 228
EcoT14I	CCWWGG	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	1023
EcoT38I	GRGCYC	2 cut(s)	27, 79
ErhI	CCWWGG	1 cut(s)	258
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	5 cut(s)	217, 1001, 1025, 1066, 1205
FaiI	YATR	8 cut(s)	119, 215, 636, 999, 1023, 1038, 1064, 1203
FatI	CATG	5 cut(s)	213, 997, 1021, 1062, 1201
FauI	CCCGC	1 cut(s)	104
Fnu4HI	GCNGC	3 cut(s)	218, 511, 514
FokI	GGATG	6 cut(s)	692, 901, 917, 937, 943, 988
FriOI	GRGCYC	2 cut(s)	27, 79
Fsp4HI	GCNGC	3 cut(s)	218, 511, 514
FspBI	CTAG	4 cut(s)	80, 1068, 1073, 1221
FspI	TGCGCA	1 cut(s)	603
GlaI	GCGC	5 cut(s)	8, 141, 188, 603, 1179
GluI	GCNGC	3 cut(s)	218, 511, 514
GsaI	CCCAGC	1 cut(s)	1112
GsuI	CTGGAG	1 cut(s)	93
HapII	CCGG	2 cut(s)	175, 250
HhaI	GCGC	5 cut(s)	9, 142, 189, 604, 1180
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	5 cut(s)	217, 1001, 1025, 1066, 1205
Hin6I	GCGC	5 cut(s)	7, 140, 187, 602, 1178
HinP1I	GCGC	5 cut(s)	7, 140, 187, 602, 1178
HinfI	GANTC	1 cut(s)	1051
HpaII	CCGG	2 cut(s)	175, 250
HphI	GGTGA	7 cut(s)	37, 491, 572, 584, 664, 700, 862
Hpy166II	GTNNAC	4 cut(s)	133, 563, 659, 1099
Hpy188I	TCNGA	3 cut(s)	22, 58, 1138
Hpy188III	TCNNGA	2 cut(s)	72, 307
Hpy8I	GTNNAC	4 cut(s)	133, 563, 659, 1099
Hpy99I	CGWCG	2 cut(s)	194, 918
HpyAV	CCTTC	6 cut(s)	50, 470, 512, 548, 786, 1175
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4IV	ACGT	3 cut(s)	129, 192, 854
HpyCH4V	TGCA	8 cut(s)	208, 466, 634, 659, 988, 1015, 1021, 1048
HpyF10VI	GCNNNNNNNGC	6 cut(s)	214, 519, 994, 1003, 1012, 1122
HpyF3I	CTNAG	1 cut(s)	1026
HpySE526I	ACGT	3 cut(s)	129, 192, 854
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	5 cut(s)	217, 1001, 1025, 1066, 1205
HspAI	GCGC	5 cut(s)	7, 140, 187, 602, 1178
Kzo9I	GATC	1 cut(s)	246
LmnI	GCTCC	4 cut(s)	22, 74, 337, 898
LweI	GCATC	1 cut(s)	1002
MaeI	CTAG	4 cut(s)	80, 1068, 1073, 1221
MaeII	ACGT	3 cut(s)	129, 192, 854
MaeIII	GTNAC	4 cut(s)	160, 425, 850, 1216
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MfeI	CAATTG	2 cut(s)	467, 582
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	3 cut(s)	27, 79, 661
MmeI	TCCRAC	3 cut(s)	607, 795, 939
Mph1103I	ATGCAT	1 cut(s)	1023
MroXI	GAANNNNTTC	1 cut(s)	107
MseI	TTAA	1 cut(s)	1145
MspI	CCGG	2 cut(s)	175, 250
MspR9I	CCNGG	3 cut(s)	184, 230, 251
MunI	CAATTG	2 cut(s)	467, 582
MvaI	CCWGG	2 cut(s)	184, 230
MvnI	CGCG	3 cut(s)	99, 153, 189
MwoI	GCNNNNNNNGC	6 cut(s)	214, 519, 994, 1003, 1012, 1122
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	5 cut(s)	217, 1001, 1025, 1066, 1205
NlaIV	GGNNCC	1 cut(s)	221
NmeAIII	GCCGAG	1 cut(s)	116
NmuCI	GTSAC	3 cut(s)	160, 425, 850
NsbI	TGCGCA	1 cut(s)	603
NsiI	ATGCAT	1 cut(s)	1023
NspI	RCATGY	3 cut(s)	217, 1025, 1205
PaeI	GCATGC	1 cut(s)	1025
PciI	ACATGT	1 cut(s)	1201
PdmI	GAANNNNTTC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	1051
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	3 cut(s)	219, 512, 515
PmaCI	CACGTG	1 cut(s)	130
PmlI	CACGTG	1 cut(s)	130
Ppu21I	YACGTR	1 cut(s)	130
PscI	ACATGT	1 cut(s)	1201
Psp124BI	GAGCTC	2 cut(s)	27, 79
Psp6I	CCWGG	2 cut(s)	182, 228
PspCI	CACGTG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	1108
PspGI	CCWGG	2 cut(s)	182, 228
PspN4I	GGNNCC	1 cut(s)	221
PspPI	GGNCC	2 cut(s)	58, 180
PstNI	CAGNNNCTG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	246
RsaI	GTAC	2 cut(s)	227, 314
RsaNI	GTAC	2 cut(s)	226, 313
SacI	GAGCTC	2 cut(s)	27, 79
SaqAI	TTAA	1 cut(s)	1145
SatI	GCNGC	3 cut(s)	218, 511, 514
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	2 cut(s)	58, 180
ScrFI	CCNGG	3 cut(s)	184, 230, 251
SduI	GDGCHC	3 cut(s)	27, 79, 661
SfaNI	GCATC	1 cut(s)	1002
SinI	GGWCC	2 cut(s)	58, 180
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
SpeI	ACTAGT	1 cut(s)	1220
SphI	GCATGC	1 cut(s)	1025
SsiI	CCGC	7 cut(s)	97, 151, 217, 510, 513, 1116, 1153
SspMI	CTAG	4 cut(s)	80, 1068, 1073, 1221
SstI	GAGCTC	2 cut(s)	27, 79
StyD4I	CCNGG	3 cut(s)	182, 228, 249
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	425
TaiI	ACGT	3 cut(s)	132, 195, 857
TaqI	TCGA	2 cut(s)	27, 873
TauI	GCSGC	3 cut(s)	220, 513, 516
TfiI	GAWTC	1 cut(s)	1051
Tru1I	TTAA	1 cut(s)	1145
Tru9I	TTAA	1 cut(s)	1145
TscAI	CASTG	3 cut(s)	165, 299, 1132
TseFI	GTSAC	3 cut(s)	160, 425, 850
Tsp45I	GTSAC	3 cut(s)	160, 425, 850
TspDTI	ATGAA	2 cut(s)	17, 468
TspGWI	ACGGA	2 cut(s)	159, 931
TspRI	CASTG	3 cut(s)	165, 299, 1132
Van91I	CCANNNNNTGG	1 cut(s)	229
VneI	GTGCAC	1 cut(s)	657
VpaK11BI	GGWCC	2 cut(s)	58, 180
XapI	RAATTY	6 cut(s)	266, 301, 539, 869, 1132, 1140
XceI	RCATGY	3 cut(s)	217, 1025, 1205
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	4 cut(s)	80, 1068, 1073, 1221
ZraI	GACGTC	1 cut(s)	193
Zsp2I	ATGCAT	1 cut(s)	1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.