Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003279

Physical Location & Seq

Genomic Coordinates Forward (+)

17713862 .. 17715402

Gene Structure 1541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G158400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGAAGCGCAAGAAATGGTCGGAGCTCGAAGAGCTGACCCTTCTCACCAAGTACTCGGAGCTTCTCATCTCTGGGGCTCTAGCCAAGCTCAAAACCCGTGAGAAAAAATTCAAGCCCATAGCGGACCACGTGAACTCGGTGCATCATCTTCACGACCCAGTAACCTTCCCTTTCAAATGGTCCTGGCGCGACGTCTCGATCAAGGTCCAAAACATGCGCCACCAGTACCTGGGTGTGAAGCAGAAGATCCGGGTCTCCAAGGACGAGTTCAACTGGAAAGATGGTGAAAACCACTGGGAGAATTTCTTGAAGTACAAAGAAGTGTTTGGGGATGTGGAGCTTGATGTTAAGGGCAAGAGGGCGTGCGAAAGTGAGAGCCTTGATGTTTTTGGGGATTGTGGGGACTTGGGGTTTGGGATTGACTCTGAGGATTTAGAGGAAGAAGAGGACGAAGAAGAAGAAGAACCATTGGAAGATGAAGAAGAAGAAGAAGACGGTAGCGGTGATGGCGATAATGGTCTCGAGGAATTAGGTAGGAGTGAAGGTGGTGAATTTGGGGGTCAGAGAGAAATTGGAGATGTGGGTTTTGCTCAAAAAAGGAAATTGAGTAAGGTTGGATTACATAGGAGGTTGGGGTTGGTCAGTGCACAAGTTTTGGACTTGAGGGATGTGGTTGTGAAGAGGGAAGAGAGGAGGAGAGAGAGGGAGTGTAGGAGAGAGAACAGTGAGGCTGAGAGAGAGGAAAAGAGGAAAGAACTTGAGTGCAGGAGAGAGAAAAGGAGGAATGAGAGGGAGGAGTGGTTGGAGGATAGAGAATTGGAGTTAGAAGAGAGGGAGGTGATGTGGGCAAGAAATGAATTTGAGAAAAGGTTGAGGCTAGAGAGGGAATTCGATGAGGAGCGGCGTAGAAGGATGAGGATGGAGGAGAAGAGAGAAGAGGCAGAGTTGGAGTGGAGGGAGAGGATGGTGAGTATGCAAATTGAGCATGAGAAGCAAATGATGCAAATGCATGCTGAAGCGTGCCAGAACCAAATGCAGATTCTTGGAGTCATGGCTAGGCTAGTTTGTCAATTTTTTGGGTCGGTGAATGATGGGCTGGGAGGTGGTTTAGGGGCTTTGCCACCTCAGGTTTTGCAGAATTTGCAGCATCCGGGGGATTTGGGCCACAATGGGAAGCCGGAGGCTAATTCACCTTCTGAGTTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

403

Amino Acids

47.43

Weight (kDa)

5.1

Isoelectric Point (pI)

64.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003279)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06071
malus_domestica	MD09G1261100.v1.1
prunus_persica	Prupe.3G158400_v2.0.a1
pyrus_communis	pycom09g17540
rosa_chinensis	RchiOBHm_Chr1g0333501 RchiOBHm_Chr1g0334211 RchiOBHm_Chr7g0221661
rosa_laevigata	RLG00000002147 RLG00000029549 RLG00000029550 RLG00000029599 RLG00000029600 RLG00000029601
rosa_multiflora	Rmu_sc0000494.1_g000002 Rmu_sc0000494.1_g000004 Rmu_sc0000494.1_g000017 Rmu_sc0002955.1_g000015 Rmu_sc0003435.1_g000020 Rmu_sc0005016.1_g000034 Rmu_sc0012130.1_g000001 Rmu_sc0028037.1_g000004
rosa_roxburghii	Rroxscaffold_2G00088180 Rroxscaffold_3G00238140 Rroxscaffold_4G00317400
rosa_rugosa	Rorug01G0109400 Rorug01G0109500 Rorug01G0110100 Rorug01G0110200 Rorug01G0110300 Rorug07G0202800
rosa_samantha	Rh1BG101600 Rh1CG126900 Rh1CG129800 Rh7AG343300 Rh7BG333400
rosa_wichuraiana	Rw0G003360 Rw7G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	195
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccBSI	CCGCTC	1 cut(s)	901
AccII	CGCG	1 cut(s)	189
AciI	CCGC	3 cut(s)	122, 501, 901
AclWI	GGATC	1 cut(s)	241
AcsI	RAATTY	6 cut(s)	107, 301, 551, 857, 887, 1138
AcuI	CTGAAG	1 cut(s)	1035
AcvI	CACGTG	1 cut(s)	130
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	3 cut(s)	53, 227, 314
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	4 cut(s)	112, 175, 271, 310
AjnI	CCWGG	2 cut(s)	182, 228
AjuI	GAANNNNNNNTTGG	4 cut(s)	251, 283, 1023, 1055
AluBI	AGCT	5 cut(s)	25, 34, 61, 88, 340
AluI	AGCT	5 cut(s)	25, 34, 61, 88, 340
Alw21I	GWGCWC	2 cut(s)	27, 649
Alw26I	GTCTC	3 cut(s)	199, 259, 524
Alw44I	GTGCAC	1 cut(s)	645
AlwI	GGATC	1 cut(s)	241
AlwNI	CAGNNNCTG	1 cut(s)	229
Ama87I	CYCGRG	1 cut(s)	521
AoxI	GGCC	1 cut(s)	1162
ApaLI	GTGCAC	1 cut(s)	645
ApeKI	GCWGC	1 cut(s)	1144
ApoI	RAATTY	6 cut(s)	107, 301, 551, 857, 887, 1138
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
Asp700I	GAANNNNTTC	1 cut(s)	107
AspLEI	GCGC	3 cut(s)	9, 189, 219
AspS9I	GGNCC	4 cut(s)	124, 180, 205, 1162
AsuC2I	CCSGG	2 cut(s)	251, 1152
AsuHPI	GGTGA	8 cut(s)	37, 296, 515, 560, 850, 979, 1096, 1182
AvaI	CYCGRG	1 cut(s)	521
AvaII	GGWCC	3 cut(s)	124, 180, 205
AxyI	CCTNAGG	1 cut(s)	1125
BaeGI	GKGCMC	1 cut(s)	649
BanII	GRGCYC	2 cut(s)	27, 79
BbrPI	CACGTG	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	498
Bbv12I	GWGCWC	2 cut(s)	27, 649
BbvI	GCAGC	1 cut(s)	1156
BccI	CCATC	5 cut(s)	275, 500, 913, 958, 1085
BciT130I	CCWGG	2 cut(s)	184, 230
BcnI	CCSGG	2 cut(s)	251, 1152
BcoDI	GTCTC	3 cut(s)	199, 259, 524
BfaI	CTAG	5 cut(s)	80, 878, 1056, 1061, 1207
BisI	GCNGC	2 cut(s)	902, 1145
BlsI	GCNGC	2 cut(s)	903, 1146
BmcAI	AGTACT	1 cut(s)	53
Bme1390I	CCNGG	4 cut(s)	184, 230, 251, 1152
Bme18I	GGWCC	3 cut(s)	124, 180, 205
BmeT110I	CYCGRG	1 cut(s)	521
BmgT120I	GGNCC	4 cut(s)	124, 180, 205, 1162
BmrFI	CCNGG	4 cut(s)	184, 230, 251, 1152
BmrI	ACTGGG	2 cut(s)	152, 304
BmsI	GCATC	3 cut(s)	151, 990, 1156
BmuI	ACTGGG	2 cut(s)	152, 304
BpiI	GAAGAC	1 cut(s)	498
BpuEI	CTTGAG	2 cut(s)	682, 779
BpuMI	CCSGG	2 cut(s)	251, 1152
BsaAI	YACGTR	1 cut(s)	130
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	2 cut(s)	259, 524
BsaJI	CCNNGG	3 cut(s)	229, 258, 1151
BsaXI	ACNNNNNCTCC	6 cut(s)	529, 559, 785, 815, 827, 857
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	4 cut(s)	158, 223, 278, 299
Bse21I	CCTNAGG	1 cut(s)	1125
BseBI	CCWGG	2 cut(s)	184, 230
BseDI	CCNNGG	3 cut(s)	229, 258, 1151
BseGI	GGATG	6 cut(s)	337, 673, 918, 924, 969, 1147
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	4 cut(s)	417, 723, 1139, 1188
BseNI	ACTGG	4 cut(s)	158, 223, 278, 299
BseRI	GAGGAG	5 cut(s)	706, 709, 809, 911, 938
BseSI	GKGCMC	1 cut(s)	649
BseXI	GCAGC	1 cut(s)	1156
BseYI	CCCAGC	1 cut(s)	1096
BsgI	GTGCAG	1 cut(s)	784
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	1164
BsiHKAI	GWGCWC	2 cut(s)	27, 649
BsiHKCI	CYCGRG	1 cut(s)	521
BsiSI	CCGG	3 cut(s)	250, 1151, 1178
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	3 cut(s)	199, 259, 524
BsmBI	CGTCTC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	1164
Bso31I	GGTCTC	2 cut(s)	259, 524
BsoBI	CYCGRG	1 cut(s)	521
Bsp1286I	GDGCHC	3 cut(s)	27, 79, 649
Bsp143I	GATC	2 cut(s)	198, 246
BspACI	CCGC	3 cut(s)	122, 501, 901
BspANI	GGCC	1 cut(s)	1164
BspCNI	CTCAG	4 cut(s)	418, 724, 1138, 1189
BspFNI	CGCG	1 cut(s)	189
BspPI	GGATC	1 cut(s)	241
BspQI	GCTCTTC	1 cut(s)	24
BspTNI	GGTCTC	2 cut(s)	259, 524
BsrBI	CCGCTC	1 cut(s)	901
BsrI	ACTGG	4 cut(s)	158, 223, 278, 299
BssECI	CCNNGG	3 cut(s)	229, 258, 1151
BssMI	GATC	2 cut(s)	198, 246
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	258
Bst2UI	CCWGG	2 cut(s)	184, 230
Bst4CI	ACNGT	2 cut(s)	497, 725
Bst6I	CTCTTC	7 cut(s)	24, 438, 674, 681, 822, 923, 930
BstACI	GRCGYC	1 cut(s)	192
BstAPI	GCANNNNNTGC	2 cut(s)	1000, 1141
BstBAI	YACGTR	1 cut(s)	130
BstC8I	GCNNGC	3 cut(s)	364, 1011, 1021
BstDEI	CTNAG	4 cut(s)	426, 732, 1125, 1197
BstF5I	GGATG	6 cut(s)	337, 673, 918, 924, 969, 1147
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	3 cut(s)	9, 189, 219
BstKTI	GATC	2 cut(s)	201, 249
BstMAI	GTCTC	3 cut(s)	199, 259, 524
BstMBI	GATC	2 cut(s)	198, 246
BstMWI	GCNNNNNNNGC	6 cut(s)	31, 507, 982, 991, 1000, 1141
BstNI	CCWGG	2 cut(s)	184, 230
BstNSI	RCATGY	2 cut(s)	217, 1013
BstSCI	CCNGG	4 cut(s)	182, 228, 249, 1150
BstSLI	GKGCMC	1 cut(s)	649
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	1156
BstV2I	GAAGAC	1 cut(s)	498
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
Bsu36I	CCTNAGG	1 cut(s)	1125
BsuRI	GGCC	1 cut(s)	1164
BtsCI	GGATG	6 cut(s)	337, 673, 918, 924, 969, 1147
BtsIMutI	CAGTG	3 cut(s)	292, 649, 730
Cac8I	GCNNGC	3 cut(s)	364, 1011, 1021
CaiI	CAGNNNCTG	1 cut(s)	229
CfoI	GCGC	3 cut(s)	9, 189, 219
Cfr13I	GGNCC	4 cut(s)	124, 180, 205, 1162
Csp6I	GTAC	3 cut(s)	52, 226, 313
CviAII	CATG	4 cut(s)	214, 986, 1010, 1051
CviQI	GTAC	3 cut(s)	52, 226, 313
DdeI	CTNAG	4 cut(s)	426, 732, 1125, 1197
DpnI	GATC	2 cut(s)	200, 248
DpnII	GATC	2 cut(s)	198, 246
Eam1104I	CTCTTC	7 cut(s)	24, 438, 674, 681, 822, 923, 930
EarI	CTCTTC	7 cut(s)	24, 438, 674, 681, 822, 923, 930
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	2 cut(s)	27, 79
Eco31I	GGTCTC	2 cut(s)	259, 524
Eco47I	GGWCC	3 cut(s)	124, 180, 205
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	1035
Eco72I	CACGTG	1 cut(s)	130
Eco81I	CCTNAGG	1 cut(s)	1125
Eco88I	CYCGRG	1 cut(s)	521
EcoICRI	GAGCTC	1 cut(s)	25
EcoRI	GAATTC	1 cut(s)	887
EcoRII	CCWGG	2 cut(s)	182, 228
EcoT14I	CCWWGG	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	1011
EcoT38I	GRGCYC	2 cut(s)	27, 79
ErhI	CCWWGG	1 cut(s)	258
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	4 cut(s)	217, 989, 1013, 1054
FaiI	YATR	7 cut(s)	119, 215, 624, 974, 987, 1011, 1052
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	4 cut(s)	213, 985, 1009, 1050
Fnu4HI	GCNGC	2 cut(s)	902, 1145
FokI	GGATG	6 cut(s)	344, 680, 925, 931, 976, 1134
FriOI	GRGCYC	2 cut(s)	27, 79
Fsp4HI	GCNGC	2 cut(s)	902, 1145
FspBI	CTAG	5 cut(s)	80, 878, 1056, 1061, 1207
GlaI	GCGC	3 cut(s)	8, 188, 218
GluI	GCNGC	2 cut(s)	902, 1145
GsaI	CCCAGC	1 cut(s)	1100
HaeIII	GGCC	1 cut(s)	1164
HapII	CCGG	3 cut(s)	250, 1151, 1178
HhaI	GCGC	3 cut(s)	9, 189, 219
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	4 cut(s)	217, 989, 1013, 1054
Hin6I	GCGC	3 cut(s)	7, 187, 217
HinP1I	GCGC	3 cut(s)	7, 187, 217
HinfI	GANTC	3 cut(s)	422, 1039, 1047
HpaII	CCGG	3 cut(s)	250, 1151, 1178
HphI	GGTGA	8 cut(s)	37, 296, 515, 560, 850, 979, 1096, 1182
Hpy166II	GTNNAC	2 cut(s)	133, 647
Hpy188I	TCNGA	5 cut(s)	22, 58, 427, 564, 1198
Hpy188III	TCNNGA	4 cut(s)	152, 196, 307, 521
Hpy8I	GTNNAC	2 cut(s)	133, 647
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	5 cut(s)	50, 175, 536, 903, 1203
HpyCH4III	ACNGT	2 cut(s)	497, 725
HpyCH4IV	ACGT	2 cut(s)	129, 192
HpyCH4V	TGCA	9 cut(s)	142, 647, 765, 976, 1003, 1009, 1036, 1135, 1144
HpyF10VI	GCNNNNNNNGC	6 cut(s)	31, 507, 982, 991, 1000, 1141
HpyF3I	CTNAG	4 cut(s)	426, 732, 1125, 1197
HpySE526I	ACGT	2 cut(s)	129, 192
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	4 cut(s)	217, 989, 1013, 1054
HspAI	GCGC	3 cut(s)	7, 187, 217
Kzo9I	GATC	2 cut(s)	198, 246
LguI	GCTCTTC	1 cut(s)	24
LmnI	GCTCC	4 cut(s)	22, 58, 337, 898
Lsp1109I	GCAGC	1 cut(s)	1156
LweI	GCATC	3 cut(s)	151, 990, 1156
MaeI	CTAG	5 cut(s)	80, 878, 1056, 1061, 1207
MaeII	ACGT	2 cut(s)	129, 192
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	2 cut(s)	200, 248
MbiI	CCGCTC	1 cut(s)	901
MboI	GATC	2 cut(s)	198, 246
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	3 cut(s)	27, 79, 649
MlyI	GAGTC	2 cut(s)	416, 1056
MmeI	TCCRAC	3 cut(s)	595, 783, 927
Mph1103I	ATGCAT	1 cut(s)	1011
MroXI	GAANNNNTTC	1 cut(s)	107
MseI	TTAA	1 cut(s)	348
MspI	CCGG	3 cut(s)	250, 1151, 1178
MspR9I	CCNGG	4 cut(s)	184, 230, 251, 1152
MvaI	CCWGG	2 cut(s)	184, 230
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	6 cut(s)	31, 507, 982, 991, 1000, 1141
NciI	CCSGG	2 cut(s)	251, 1152
NdeII	GATC	2 cut(s)	198, 246
NlaIII	CATG	4 cut(s)	217, 989, 1013, 1054
NsiI	ATGCAT	1 cut(s)	1011
NspI	RCATGY	2 cut(s)	217, 1013
PaeI	GCATGC	1 cut(s)	1013
PaeR7I	CTCGAG	1 cut(s)	521
PciSI	GCTCTTC	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	1039
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	2 cut(s)	903, 1146
PleI	GAGTC	2 cut(s)	416, 1055
PmaCI	CACGTG	1 cut(s)	130
PmlI	CACGTG	1 cut(s)	130
PpsI	GAGTC	2 cut(s)	416, 1055
Ppu21I	YACGTR	1 cut(s)	130
Psp124BI	GAGCTC	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	182, 228
PspCI	CACGTG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	1096
PspGI	CCWGG	2 cut(s)	182, 228
PspPI	GGNCC	4 cut(s)	124, 180, 205, 1162
PstNI	CAGNNNCTG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	246
RsaI	GTAC	3 cut(s)	53, 227, 314
RsaNI	GTAC	3 cut(s)	52, 226, 313
SacI	GAGCTC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	2 cut(s)	902, 1145
Sau3AI	GATC	2 cut(s)	198, 246
Sau96I	GGNCC	4 cut(s)	124, 180, 205, 1162
ScaI	AGTACT	1 cut(s)	53
SchI	GAGTC	2 cut(s)	416, 1056
ScrFI	CCNGG	4 cut(s)	184, 230, 251, 1152
SduI	GDGCHC	3 cut(s)	27, 79, 649
SfaNI	GCATC	3 cut(s)	151, 990, 1156
Sfr274I	CTCGAG	1 cut(s)	521
SinI	GGWCC	3 cut(s)	124, 180, 205
SlaI	CTCGAG	1 cut(s)	521
SmlI	CTYRAG	3 cut(s)	521, 661, 758
SmoI	CTYRAG	3 cut(s)	521, 661, 758
SphI	GCATGC	1 cut(s)	1013
SsiI	CCGC	3 cut(s)	122, 501, 901
SspMI	CTAG	5 cut(s)	80, 878, 1056, 1061, 1207
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	4 cut(s)	182, 228, 249, 1150
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	2 cut(s)	497, 725
TaiI	ACGT	2 cut(s)	132, 195
TaqI	TCGA	4 cut(s)	27, 197, 522, 891
TatI	WGTACW	2 cut(s)	51, 312
TauI	GCSGC	1 cut(s)	904
TfiI	GAWTC	1 cut(s)	1039
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	3 cut(s)	299, 649, 730
TseI	GCWGC	1 cut(s)	1144
TspDTI	ATGAA	3 cut(s)	17, 492, 870
TspRI	CASTG	3 cut(s)	299, 649, 730
Van91I	CCANNNNNTGG	1 cut(s)	229
VneI	GTGCAC	1 cut(s)	645
VpaK11BI	GGWCC	3 cut(s)	124, 180, 205
XapI	RAATTY	6 cut(s)	107, 301, 551, 857, 887, 1138
XceI	RCATGY	2 cut(s)	217, 1013
XhoI	CTCGAG	1 cut(s)	521
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	5 cut(s)	80, 878, 1056, 1061, 1207
ZraI	GACGTC	1 cut(s)	193
ZrmI	AGTACT	1 cut(s)	53
Zsp2I	ATGCAT	1 cut(s)	1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.