Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000494.1

Orthogroup ID

OG0003279

Physical Location & Seq

Genomic Coordinates Reverse (-)

11918 .. 13080

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000494.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

atgaagcgcaagaaatggtcagagcttgaagaacagacccttctcacgaagtattctgagcttctcagctctcgagctctagccaagctcaaaactcgtgagaaaaaattcaagcccatagcggagcatgtgaacttagtgcacaaccttgacgaccctgttaccttccctttcaaatggtcctggcgcgacgtgtcaatcaaggtccaaaacatgcgccaccagtacctgggtgtcaagcagaagatccgggtctccaaggtcgagttcaactggaaggatggtgaaaatcactgggagaatttcttgaagtacaaggaagtgtttggtgatgtggagcttgatggtaagggcaagaggtattgtgaaaatgataactttgatgtttttggggattgtgcggacttagggtttggtattgattgtgaggatttagaggaaggagaagatgaagaagaagaagatggtactggtggtgatgacgataattgtggcgaggaattcggtaaaactgaagtcggtgttggacttgcagaatatggttgtgaagagggaagaggggaggagagagaatgtgaggctgagagagaggaaaggaggaaagaagttgagtttaggagagagaagaggacgaatgagcaggaggacttgttagaagatggagaattggagttgcaagagagagaggccatgtggacaagaagggagtttgagaaaaagttgaggttacagggggagtttgatgaggagcgtcagaggaggatgaggatggaggagaggagggaggaggaggagttggagtggcgggagaggatggtaggtttgcaaattcagcatgagaagcaaatgatgcaaatgcatgctgaggcatgccagaaccaaatgcagattcttggggtcatggctaggtttgtttgtcaattttttgggtcaatgagtgatggccttggaggtggtttagggactctgccaccccaaattttgcagaatttgcagcatcctggcggactgggtgacaatgggaagccggattccaattcgccttctgagttcctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

352

Amino Acids

41.31

Weight (kDa)

4.81

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003279)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06071
malus_domestica	MD09G1261100.v1.1
prunus_persica	Prupe.3G158400_v2.0.a1
pyrus_communis	pycom09g17540
rosa_chinensis	RchiOBHm_Chr1g0333501 RchiOBHm_Chr1g0334211 RchiOBHm_Chr7g0221661
rosa_laevigata	RLG00000002147 RLG00000029549 RLG00000029550 RLG00000029599 RLG00000029600 RLG00000029601
rosa_multiflora	Rmu_sc0000494.1_g000002 Rmu_sc0000494.1_g000004 Rmu_sc0000494.1_g000017 Rmu_sc0002955.1_g000015 Rmu_sc0003435.1_g000020 Rmu_sc0005016.1_g000034 Rmu_sc0012130.1_g000001 Rmu_sc0028037.1_g000004
rosa_roxburghii	Rroxscaffold_2G00088180 Rroxscaffold_3G00238140 Rroxscaffold_4G00317400
rosa_rugosa	Rorug01G0109400 Rorug01G0109500 Rorug01G0110100 Rorug01G0110200 Rorug01G0110300 Rorug07G0202800
rosa_samantha	Rh1BG101600 Rh1CG126900 Rh1CG129800 Rh7AG343300 Rh7BG333400
rosa_wichuraiana	Rw0G003360 Rw7G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccII	CGCG	1 cut(s)	189
AciI	CCGC	4 cut(s)	122, 401, 805, 1005
AclWI	GGATC	1 cut(s)	241
AcsI	RAATTY	6 cut(s)	107, 301, 500, 828, 978, 988
AcuI	CTGAAG	1 cut(s)	534
AfaI	GTAC	3 cut(s)	227, 314, 469
AfiI	CCNNNNNNNGG	1 cut(s)	229
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	5 cut(s)	29, 112, 175, 271, 310
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	3 cut(s)	182, 228, 1000
AjuI	GAANNNNNNNTTGG	6 cut(s)	251, 283, 507, 539, 873, 905
AluBI	AGCT	6 cut(s)	25, 61, 69, 77, 88, 340
AluI	AGCT	6 cut(s)	25, 61, 69, 77, 88, 340
Alw21I	GWGCWC	2 cut(s)	79, 144
Alw26I	GTCTC	1 cut(s)	259
Alw44I	GTGCAC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	241
AlwNI	CAGNNNCTG	1 cut(s)	229
Ama87I	CYCGRG	1 cut(s)	72
AoxI	GGCC	2 cut(s)	687, 943
ApaLI	GTGCAC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	994
ApoI	RAATTY	6 cut(s)	107, 301, 500, 828, 978, 988
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
Asp700I	GAANNNNTTC	1 cut(s)	107
AspLEI	GCGC	3 cut(s)	9, 189, 219
AspS9I	GGNCC	2 cut(s)	180, 205
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	4 cut(s)	296, 341, 488, 1025
AvaI	CYCGRG	1 cut(s)	72
AvaII	GGWCC	2 cut(s)	180, 205
BaeGI	GKGCMC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	79
BauI	CACGAG	1 cut(s)	96
Bbv12I	GWGCWC	2 cut(s)	79, 144
BbvCI	CCTCAGC	1 cut(s)	864
BbvI	GCAGC	1 cut(s)	1006
BccI	CCATC	7 cut(s)	275, 338, 458, 653, 763, 808, 935
BciT130I	CCWGG	3 cut(s)	184, 230, 1002
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	3 cut(s)	80, 906, 1057
BisI	GCNGC	1 cut(s)	995
BlsI	GCNGC	1 cut(s)	996
Bme1390I	CCNGG	4 cut(s)	184, 230, 251, 1002
Bme18I	GGWCC	2 cut(s)	180, 205
BmeT110I	CYCGRG	1 cut(s)	72
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	180, 205
BmrFI	CCNGG	4 cut(s)	184, 230, 251, 1002
BmrI	ACTGGG	2 cut(s)	304, 1019
BmsI	GCATC	2 cut(s)	840, 1006
BmuI	ACTGGG	2 cut(s)	304, 1019
Bpu10I	CCTNAGC	1 cut(s)	864
BpuMI	CCSGG	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	3 cut(s)	229, 258, 946
BsaXI	ACNNNNNCTCC	6 cut(s)	635, 665, 779, 785, 809, 815
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	5 cut(s)	223, 278, 299, 475, 1014
BseBI	CCWGG	3 cut(s)	184, 230, 1002
BseDI	CCNNGG	3 cut(s)	229, 258, 946
BseGI	GGATG	5 cut(s)	286, 768, 774, 819, 997
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	5 cut(s)	48, 79, 573, 855, 1038
BseNI	ACTGG	5 cut(s)	223, 278, 299, 475, 1014
BseRI	GAGGAG	8 cut(s)	578, 761, 772, 788, 793, 800, 803, 806
BseSI	GKGCMC	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	1006
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	689, 945
BsiHKAI	GWGCWC	2 cut(s)	79, 144
BsiHKCI	CYCGRG	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	250, 1028
BslFI	GGGAC	1 cut(s)	976
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	976
BsnI	GGCC	2 cut(s)	689, 945
Bso31I	GGTCTC	1 cut(s)	259
BsoBI	CYCGRG	1 cut(s)	72
Bsp1286I	GDGCHC	2 cut(s)	79, 144
Bsp143I	GATC	1 cut(s)	246
BspACI	CCGC	4 cut(s)	122, 401, 805, 1005
BspANI	GGCC	2 cut(s)	689, 945
BspCNI	CTCAG	5 cut(s)	49, 78, 574, 856, 1039
BspFNI	CGCG	1 cut(s)	189
BspPI	GGATC	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	259
BsrI	ACTGG	5 cut(s)	223, 278, 299, 475, 1014
BssECI	CCNNGG	3 cut(s)	229, 258, 946
BssMI	GATC	1 cut(s)	246
BssSI	CACGAG	1 cut(s)	96
BssT1I	CCWWGG	2 cut(s)	258, 946
Bst2BI	CACGAG	1 cut(s)	96
Bst2UI	CCWGG	3 cut(s)	184, 230, 1002
Bst6I	CTCTTC	3 cut(s)	543, 550, 620
BstAPI	GCANNNNNTGC	2 cut(s)	850, 991
BstC8I	GCNNGC	2 cut(s)	861, 871
BstDEI	CTNAG	7 cut(s)	57, 65, 136, 406, 582, 864, 1047
BstF5I	GGATG	5 cut(s)	286, 768, 774, 819, 997
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	3 cut(s)	9, 189, 219
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	4 cut(s)	832, 841, 850, 991
BstNI	CCWGG	3 cut(s)	184, 230, 1002
BstNSI	RCATGY	4 cut(s)	131, 217, 863, 873
BstSCI	CCNGG	4 cut(s)	182, 228, 249, 1000
BstSLI	GKGCMC	1 cut(s)	144
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	1006
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	689, 945
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	5 cut(s)	286, 768, 774, 819, 997
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	2 cut(s)	861, 871
CaiI	CAGNNNCTG	1 cut(s)	229
CfoI	GCGC	3 cut(s)	9, 189, 219
Cfr13I	GGNCC	2 cut(s)	180, 205
CseI	GACGC	1 cut(s)	740
Csp6I	GTAC	3 cut(s)	226, 313, 468
CviAII	CATG	7 cut(s)	128, 214, 691, 836, 860, 870, 901
CviQI	GTAC	3 cut(s)	226, 313, 468
DdeI	CTNAG	7 cut(s)	57, 65, 136, 406, 582, 864, 1047
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
Eam1104I	CTCTTC	3 cut(s)	543, 550, 620
EarI	CTCTTC	3 cut(s)	543, 550, 620
EciI	GGCGGA	1 cut(s)	1020
Ecl136II	GAGCTC	1 cut(s)	77
Eco130I	CCWWGG	2 cut(s)	258, 946
Eco24I	GRGCYC	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	259
Eco47I	GGWCC	2 cut(s)	180, 205
Eco53kI	GAGCTC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	534
Eco88I	CYCGRG	1 cut(s)	72
EcoICRI	GAGCTC	1 cut(s)	77
EcoRI	GAATTC	1 cut(s)	500
EcoRII	CCWGG	3 cut(s)	182, 228, 1000
EcoT14I	CCWWGG	2 cut(s)	258, 946
EcoT22I	ATGCAT	1 cut(s)	861
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	2 cut(s)	258, 946
FaeI	CATG	7 cut(s)	131, 217, 694, 839, 863, 873, 904
FaiI	YATR	9 cut(s)	119, 129, 215, 540, 692, 837, 861, 871, 902
FaqI	GGGAC	1 cut(s)	976
FatI	CATG	7 cut(s)	127, 213, 690, 835, 859, 869, 900
FauI	CCCGC	1 cut(s)	798
Fnu4HI	GCNGC	1 cut(s)	995
FokI	GGATG	5 cut(s)	293, 775, 781, 826, 984
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	995
FspBI	CTAG	3 cut(s)	80, 906, 1057
GlaI	GCGC	3 cut(s)	8, 188, 218
GluI	GCNGC	1 cut(s)	995
HaeIII	GGCC	2 cut(s)	689, 945
HapII	CCGG	2 cut(s)	250, 1028
HgaI	GACGC	1 cut(s)	740
HhaI	GCGC	3 cut(s)	9, 189, 219
Hin1II	CATG	7 cut(s)	131, 217, 694, 839, 863, 873, 904
Hin6I	GCGC	3 cut(s)	7, 187, 217
HinP1I	GCGC	3 cut(s)	7, 187, 217
HinfI	GANTC	3 cut(s)	889, 964, 1031
HpaII	CCGG	2 cut(s)	250, 1028
HphI	GGTGA	4 cut(s)	296, 341, 488, 1025
Hpy166II	GTNNAC	3 cut(s)	133, 142, 696
Hpy188I	TCNGA	4 cut(s)	22, 58, 756, 1048
Hpy188III	TCNNGA	4 cut(s)	46, 72, 98, 307
Hpy8I	GTNNAC	3 cut(s)	133, 142, 696
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	6 cut(s)	50, 175, 271, 434, 696, 1053
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	9 cut(s)	142, 533, 676, 826, 853, 859, 886, 985, 994
HpyF10VI	GCNNNNNNNGC	4 cut(s)	832, 841, 850, 991
HpyF3I	CTNAG	7 cut(s)	57, 65, 136, 406, 582, 864, 1047
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	7 cut(s)	131, 217, 694, 839, 863, 873, 904
HspAI	GCGC	3 cut(s)	7, 187, 217
Kzo9I	GATC	1 cut(s)	246
LmnI	GCTCC	3 cut(s)	124, 337, 748
Lsp1109I	GCAGC	1 cut(s)	1006
LweI	GCATC	2 cut(s)	840, 1006
MaeI	CTAG	3 cut(s)	80, 906, 1057
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	3 cut(s)	160, 726, 1013
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	2 cut(s)	79, 144
MlyI	GAGTC	1 cut(s)	958
MmeI	TCCRAC	2 cut(s)	505, 777
Mph1103I	ATGCAT	1 cut(s)	861
MroXI	GAANNNNTTC	1 cut(s)	107
MspI	CCGG	2 cut(s)	250, 1028
MspR9I	CCNGG	4 cut(s)	184, 230, 251, 1002
MvaI	CCWGG	3 cut(s)	184, 230, 1002
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	4 cut(s)	832, 841, 850, 991
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	7 cut(s)	131, 217, 694, 839, 863, 873, 904
NmuCI	GTSAC	1 cut(s)	1013
NsiI	ATGCAT	1 cut(s)	861
NspI	RCATGY	4 cut(s)	131, 217, 863, 873
PaeI	GCATGC	2 cut(s)	863, 873
PaeR7I	CTCGAG	1 cut(s)	72
PdmI	GAANNNNTTC	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	889, 1031
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	1 cut(s)	996
PleI	GAGTC	1 cut(s)	958
PpsI	GAGTC	1 cut(s)	958
Psp124BI	GAGCTC	1 cut(s)	79
Psp6I	CCWGG	3 cut(s)	182, 228, 1000
PspGI	CCWGG	3 cut(s)	182, 228, 1000
PspPI	GGNCC	2 cut(s)	180, 205
PstNI	CAGNNNCTG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	246
RsaI	GTAC	3 cut(s)	227, 314, 469
RsaNI	GTAC	3 cut(s)	226, 313, 468
SacI	GAGCTC	1 cut(s)	79
SatI	GCNGC	1 cut(s)	995
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	2 cut(s)	180, 205
SchI	GAGTC	1 cut(s)	958
ScrFI	CCNGG	4 cut(s)	184, 230, 251, 1002
SduI	GDGCHC	2 cut(s)	79, 144
SfaNI	GCATC	2 cut(s)	840, 1006
Sfr274I	CTCGAG	1 cut(s)	72
SinI	GGWCC	2 cut(s)	180, 205
SlaI	CTCGAG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
SphI	GCATGC	2 cut(s)	863, 873
SsiI	CCGC	4 cut(s)	122, 401, 805, 1005
SspMI	CTAG	3 cut(s)	80, 906, 1057
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	4 cut(s)	182, 228, 249, 1000
StyI	CCWWGG	2 cut(s)	258, 946
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	2 cut(s)	73, 264
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	2 cut(s)	889, 1031
TscAI	CASTG	1 cut(s)	299
TseFI	GTSAC	1 cut(s)	1013
TseI	GCWGC	1 cut(s)	994
Tsp45I	GTSAC	1 cut(s)	1013
TspDTI	ATGAA	2 cut(s)	17, 465
TspRI	CASTG	1 cut(s)	299
Van91I	CCANNNNNTGG	1 cut(s)	229
VneI	GTGCAC	1 cut(s)	140
VpaK11BI	GGWCC	2 cut(s)	180, 205
XapI	RAATTY	6 cut(s)	107, 301, 500, 828, 978, 988
XceI	RCATGY	4 cut(s)	131, 217, 863, 873
XhoI	CTCGAG	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	3 cut(s)	80, 906, 1057
Zsp2I	ATGCAT	1 cut(s)	861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.