Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003279

Physical Location & Seq

Genomic Coordinates Reverse (-)

17675517 .. 17676146

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG101600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGGAATGGCTCAAAAAAGGAAATTGAGTAAGGTTGGATTGCATAGGAGGTTGGGGTTGATGAGTGCTCAGGTGTTGGACTTGCAGAATATGGCTGTGAAGAGGGAAGAGGGGAGGAGAGAGAGGGAGTGTAGGAGAGAGAAATGTGAGGCTGAGAGAGAGGAAAGGAGGAAAGAAATTGAGTTTAGGAGAGAGAAGAGGAGGAATGAGCAGGAGGACTTGTTAGAAGATAGAGAATTGGAGTTGCAAGAGAGAGGGGTCATGTGGACAAGAAGGGAGTTTGAGAAACAGTTGAGGTTACAGGGGGAGTTTGATGAGGAGCGTCAGAGGAGGATGAGGATGGAGGAGAGGAGGGAGGAGGAGGAGTTGGAGTGGCGGGAGAGGATGATAGGTTTGCAAATTCAGCATGAGAAGCAAATGATGCAAATGCATGCTGAGGCATGCCAGAACCAAATGCAGATTCTTGGGGTCATGGCTAGATTTGTTTGTCAATTTTTTGGCTCAATGACTGATGGCCTTGGAGGTGGTTTAGGGACTCTGCCACCTCAATTTTTGCAGAATTTGCAGCATCCGGGCGGACTGGGTGACAGTGGGAAGCCGGATTCCAATTCGCCTTCTGAGTTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

24.99

Weight (kDa)

6.5

Isoelectric Point (pI)

85.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003279)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06071
malus_domestica	MD09G1261100.v1.1
prunus_persica	Prupe.3G158400_v2.0.a1
pyrus_communis	pycom09g17540
rosa_chinensis	RchiOBHm_Chr1g0333501 RchiOBHm_Chr1g0334211 RchiOBHm_Chr7g0221661
rosa_laevigata	RLG00000002147 RLG00000029549 RLG00000029550 RLG00000029599 RLG00000029600 RLG00000029601
rosa_multiflora	Rmu_sc0000494.1_g000002 Rmu_sc0000494.1_g000004 Rmu_sc0000494.1_g000017 Rmu_sc0002955.1_g000015 Rmu_sc0003435.1_g000020 Rmu_sc0005016.1_g000034 Rmu_sc0012130.1_g000001 Rmu_sc0028037.1_g000004
rosa_roxburghii	Rroxscaffold_2G00088180 Rroxscaffold_3G00238140 Rroxscaffold_4G00317400
rosa_rugosa	Rorug01G0109400 Rorug01G0109500 Rorug01G0110100 Rorug01G0110200 Rorug01G0110300 Rorug07G0202800
rosa_samantha	Rh1BG101600 Rh1CG126900 Rh1CG129800 Rh7AG343300 Rh7BG333400
rosa_wichuraiana	Rw0G003360 Rw7G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	376, 576
AcsI	RAATTY	2 cut(s)	399, 559
AjuI	GAANNNNNNNTTGG	2 cut(s)	444, 476
Alw21I	GWGCWC	1 cut(s)	70
AoxI	GGCC	1 cut(s)	514
ApeKI	GCWGC	1 cut(s)	565
ApoI	RAATTY	2 cut(s)	399, 559
AsuC2I	CCSGG	1 cut(s)	573
AsuHPI	GGTGA	1 cut(s)	596
Bbv12I	GWGCWC	1 cut(s)	70
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	1 cut(s)	577
BccI	CCATC	2 cut(s)	334, 506
BcnI	CCSGG	1 cut(s)	573
BfaI	CTAG	2 cut(s)	477, 628
BisI	GCNGC	1 cut(s)	566
BlsI	GCNGC	1 cut(s)	567
Bme1390I	CCNGG	1 cut(s)	573
BmrFI	CCNGG	1 cut(s)	573
BmrI	ACTGGG	1 cut(s)	590
BmsI	GCATC	2 cut(s)	411, 577
BmuI	ACTGGG	1 cut(s)	590
Bpu10I	CCTNAGC	2 cut(s)	69, 435
BpuMI	CCSGG	1 cut(s)	573
BsaJI	CCNNGG	1 cut(s)	517
BsaXI	ACNNNNNCTCC	6 cut(s)	206, 236, 350, 356, 380, 386
Bse1I	ACTGG	1 cut(s)	585
BseDI	CCNNGG	1 cut(s)	517
BseGI	GGATG	4 cut(s)	339, 345, 390, 568
BseMII	CTCAG	4 cut(s)	83, 144, 426, 609
BseNI	ACTGG	1 cut(s)	585
BseRI	GAGGAG	9 cut(s)	130, 214, 332, 343, 359, 364, 371, 374, 377
BseXI	GCAGC	1 cut(s)	577
BshFI	GGCC	1 cut(s)	516
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	2 cut(s)	572, 599
BslFI	GGGAC	1 cut(s)	547
BsmFI	GGGAC	1 cut(s)	547
BsnI	GGCC	1 cut(s)	516
Bsp1286I	GDGCHC	1 cut(s)	70
BspACI	CCGC	2 cut(s)	376, 576
BspANI	GGCC	1 cut(s)	516
BspCNI	CTCAG	4 cut(s)	82, 145, 427, 610
BsrI	ACTGG	1 cut(s)	585
BssECI	CCNNGG	1 cut(s)	517
BssT1I	CCWWGG	1 cut(s)	517
Bst4CI	ACNGT	2 cut(s)	291, 590
Bst6I	CTCTTC	3 cut(s)	95, 102, 191
BstAPI	GCANNNNNTGC	2 cut(s)	421, 562
BstC8I	GCNNGC	2 cut(s)	432, 442
BstDEI	CTNAG	4 cut(s)	69, 153, 435, 618
BstF5I	GGATG	4 cut(s)	339, 345, 390, 568
BstMWI	GCNNNNNNNGC	4 cut(s)	403, 412, 421, 562
BstNSI	RCATGY	2 cut(s)	434, 444
BstSCI	CCNGG	1 cut(s)	571
BstV1I	GCAGC	1 cut(s)	577
BsuRI	GGCC	1 cut(s)	516
BtsCI	GGATG	4 cut(s)	339, 345, 390, 568
BtsIMutI	CAGTG	1 cut(s)	595
Cac8I	GCNNGC	2 cut(s)	432, 442
CseI	GACGC	1 cut(s)	311
CviAII	CATG	5 cut(s)	262, 407, 431, 441, 472
CviJI	RGCY	7 cut(s)	11, 95, 152, 476, 501, 516, 598
CviKI_1	RGCY	7 cut(s)	11, 95, 152, 476, 501, 516, 598
DdeI	CTNAG	4 cut(s)	69, 153, 435, 618
Eam1104I	CTCTTC	3 cut(s)	95, 102, 191
EarI	CTCTTC	3 cut(s)	95, 102, 191
EciI	GGCGGA	1 cut(s)	591
Eco130I	CCWWGG	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	517
EcoT22I	ATGCAT	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	517
FaeI	CATG	5 cut(s)	265, 410, 434, 444, 475
FaiI	YATR	7 cut(s)	45, 92, 263, 408, 432, 442, 473
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	5 cut(s)	261, 406, 430, 440, 471
FauI	CCCGC	1 cut(s)	369
Fnu4HI	GCNGC	1 cut(s)	566
FokI	GGATG	4 cut(s)	346, 352, 397, 555
Fsp4HI	GCNGC	1 cut(s)	566
FspBI	CTAG	2 cut(s)	477, 628
GluI	GCNGC	1 cut(s)	566
HaeIII	GGCC	1 cut(s)	516
HapII	CCGG	2 cut(s)	572, 599
HgaI	GACGC	1 cut(s)	311
Hin1II	CATG	5 cut(s)	265, 410, 434, 444, 475
HinfI	GANTC	3 cut(s)	460, 535, 602
HpaII	CCGG	2 cut(s)	572, 599
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	2 cut(s)	327, 619
Hpy8I	GTNNAC	1 cut(s)	267
HpyAV	CCTTC	2 cut(s)	267, 624
HpyCH4III	ACNGT	2 cut(s)	291, 590
HpyCH4V	TGCA	9 cut(s)	43, 85, 247, 397, 424, 430, 457, 556, 565
HpyF10VI	GCNNNNNNNGC	4 cut(s)	403, 412, 421, 562
HpyF3I	CTNAG	4 cut(s)	69, 153, 435, 618
Hsp92II	CATG	5 cut(s)	265, 410, 434, 444, 475
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	7 cut(s)	56, 197, 287, 458, 566, 585, 612
Lsp1109I	GCAGC	1 cut(s)	577
LweI	GCATC	2 cut(s)	411, 577
MaeI	CTAG	2 cut(s)	477, 628
MaeIII	GTNAC	2 cut(s)	297, 584
MboII	GAAGA	4 cut(s)	112, 119, 208, 239
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	8 cut(s)	23, 177, 236, 399, 491, 548, 559, 607
MlyI	GAGTC	1 cut(s)	529
MmeI	TCCRAC	3 cut(s)	16, 57, 348
Mph1103I	ATGCAT	1 cut(s)	432
MspI	CCGG	2 cut(s)	572, 599
MspR9I	CCNGG	1 cut(s)	573
MwoI	GCNNNNNNNGC	4 cut(s)	403, 412, 421, 562
NciI	CCSGG	1 cut(s)	573
NlaIII	CATG	5 cut(s)	265, 410, 434, 444, 475
NmuCI	GTSAC	1 cut(s)	584
NsiI	ATGCAT	1 cut(s)	432
NspI	RCATGY	2 cut(s)	434, 444
PaeI	GCATGC	2 cut(s)	434, 444
PfeI	GAWTC	2 cut(s)	460, 602
PkrI	GCNGC	1 cut(s)	567
PleI	GAGTC	1 cut(s)	529
PpsI	GAGTC	1 cut(s)	529
SatI	GCNGC	1 cut(s)	566
SchI	GAGTC	1 cut(s)	529
ScrFI	CCNGG	1 cut(s)	573
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	7 cut(s)	36, 53, 75, 299, 394, 526, 547
SfaNI	GCATC	2 cut(s)	411, 577
SphI	GCATGC	2 cut(s)	434, 444
Sse9I	AATT	8 cut(s)	23, 177, 236, 399, 491, 548, 559, 607
SsiI	CCGC	2 cut(s)	376, 576
SspMI	CTAG	2 cut(s)	477, 628
StyD4I	CCNGG	1 cut(s)	571
StyI	CCWWGG	1 cut(s)	517
TaaI	ACNGT	2 cut(s)	291, 590
TasI	AATT	8 cut(s)	23, 177, 236, 399, 491, 548, 559, 607
TfiI	GAWTC	2 cut(s)	460, 602
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	1 cut(s)	584
TseI	GCWGC	1 cut(s)	565
Tsp45I	GTSAC	1 cut(s)	584
TspRI	CASTG	1 cut(s)	595
XapI	RAATTY	2 cut(s)	399, 559
XceI	RCATGY	2 cut(s)	434, 444
XspI	CTAG	2 cut(s)	477, 628
Zsp2I	ATGCAT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.