RLG00000029549

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003279
Physical Location & Seq
Forward (+)
40232044 .. 40232655
612 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029549

Sequence Viewer

Length: 612 bp
ATGAAGCGCAAGAAATGGTCAGAGCTTGAAGAACAGACCCTTCTCAAGAATTATTCTGAGCTTCTCAGCTCTGGAGCTCTAGCCAAGCTCAAAACCCGTGAGAAAAAATTCAAGCCCATAGCGGAACATGTGAACTCAGTGCACAATCTTGGCGACCCTGTAACCTTCCCTTTCAAATGGTCCTGGCGCGATGTGTCAATCAAGGTCCAAAACATGCGCCACCAGTACCTGGGAGTTAAGCAGAAGATCCGGGTTTCCAAGGACGAGTTCAACTGGAAGGATGGTGAAAATCACTGGGAGAATTTCTTGCAGTACAAGGAAGTGTTTGGTGATGTGGAGCTTGACGGTAAGGGCAAGAGGTCGTGTGAAAATGACAACTTTGATGTTTTTGGTGATTGTGGGGACTTAGGGTTTGGTATTGATTGTGAGGATTTAGAGGAAGAAGAAGATGAAGAAGAACATTTGGAAGAAGAAGAAGAAGAAGAAGAAGATGGTACTGGTGGTGATGACGATAATCGTGGCGAGGAATTGGGTAGAACTGAAGTCGGTGAGTTTAGGGGTGAAAGCGAAATTGAGGGACATGGGAATGGCTCAAAAAAGGAAATTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

23.54

Weight (kDa)

4.61

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 229
AccII CGCG 1 cut(s) 189
AciI CCGC 1 cut(s) 122
AclWI GGATC 1 cut(s) 241
AcsI RAATTY 2 cut(s) 107, 301
AcuI CTGAAG 1 cut(s) 561
AfaI GTAC 3 cut(s) 227, 314, 496
AfiI CCNNNNNNNGG 1 cut(s) 229
AflIII ACRYGT 1 cut(s) 127
AgsI TTSAA 4 cut(s) 29, 112, 175, 271
AjnI CCWGG 2 cut(s) 182, 228
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
AluBI AGCT 6 cut(s) 25, 61, 69, 77, 88, 340
AluI AGCT 6 cut(s) 25, 61, 69, 77, 88, 340
Alw21I GWGCWC 2 cut(s) 79, 144
Alw44I GTGCAC 1 cut(s) 140
AlwI GGATC 1 cut(s) 241
AlwNI CAGNNNCTG 1 cut(s) 229
ApaLI GTGCAC 1 cut(s) 140
ApoI RAATTY 2 cut(s) 107, 301
ArsI GACNNNNNNTTYG 2 cut(s) 395, 427
Asp700I GAANNNNTTC 1 cut(s) 107
AspLEI GCGC 3 cut(s) 9, 189, 219
AspS9I GGNCC 2 cut(s) 180, 205
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 6 cut(s) 296, 341, 404, 515, 560, 572
AvaII GGWCC 2 cut(s) 180, 205
BaeGI GKGCMC 1 cut(s) 144
BanII GRGCYC 1 cut(s) 79
Bbv12I GWGCWC 2 cut(s) 79, 144
BccI CCATC 2 cut(s) 275, 485
BciT130I CCWGG 2 cut(s) 184, 230
BcnI CCSGG 1 cut(s) 251
BfaI CTAG 1 cut(s) 80
Bme1390I CCNGG 3 cut(s) 184, 230, 251
Bme18I GGWCC 2 cut(s) 180, 205
BmgT120I GGNCC 2 cut(s) 180, 205
BmrFI CCNGG 3 cut(s) 184, 230, 251
BmrI ACTGGG 1 cut(s) 304
BmuI ACTGGG 1 cut(s) 304
BpmI CTGGAG 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 251
BsaJI CCNNGG 2 cut(s) 229, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 4 cut(s) 223, 278, 299, 502
BseBI CCWGG 2 cut(s) 184, 230
BseDI CCNNGG 2 cut(s) 229, 258
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 3 cut(s) 48, 79, 150
BseNI ACTGG 4 cut(s) 223, 278, 299, 502
BseSI GKGCMC 1 cut(s) 144
Bsh1236I CGCG 1 cut(s) 189
BsiHKAI GWGCWC 2 cut(s) 79, 144
BsiSI CCGG 1 cut(s) 250
BslFI GGGAC 2 cut(s) 416, 591
BslI CCNNNNNNNGG 1 cut(s) 229
BsmFI GGGAC 2 cut(s) 416, 591
Bsp1286I GDGCHC 2 cut(s) 79, 144
Bsp143I GATC 1 cut(s) 246
BspACI CCGC 1 cut(s) 122
BspCNI CTCAG 3 cut(s) 49, 78, 149
BspFNI CGCG 1 cut(s) 189
BspPI GGATC 1 cut(s) 241
BsrI ACTGG 4 cut(s) 223, 278, 299, 502
BssECI CCNNGG 2 cut(s) 229, 258
BssMI GATC 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 258
Bst2UI CCWGG 2 cut(s) 184, 230
Bst4CI ACNGT 1 cut(s) 347
BstDEI CTNAG 4 cut(s) 57, 65, 136, 406
BstF5I GGATG 1 cut(s) 286
BstFNI CGCG 1 cut(s) 189
BstHHI GCGC 3 cut(s) 9, 189, 219
BstKTI GATC 1 cut(s) 249
BstMBI GATC 1 cut(s) 246
BstNI CCWGG 2 cut(s) 184, 230
BstNSI RCATGY 2 cut(s) 131, 217
BstSCI CCNGG 3 cut(s) 182, 228, 249
BstSLI GKGCMC 1 cut(s) 144
BstUI CGCG 1 cut(s) 189
BstX2I RGATCY 1 cut(s) 246
BstYI RGATCY 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 204
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 2 cut(s) 144, 292
CaiI CAGNNNCTG 1 cut(s) 229
CfoI GCGC 3 cut(s) 9, 189, 219
Cfr13I GGNCC 2 cut(s) 180, 205
Csp6I GTAC 3 cut(s) 226, 313, 495
CviAII CATG 3 cut(s) 128, 214, 581
CviJI RGCY 9 cut(s) 25, 61, 69, 77, 83, 88, 115, 340, 591
CviKI_1 RGCY 9 cut(s) 25, 61, 69, 77, 83, 88, 115, 340, 591
CviQI GTAC 3 cut(s) 226, 313, 495
DdeI CTNAG 4 cut(s) 57, 65, 136, 406
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
Ecl136II GAGCTC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 258
Eco24I GRGCYC 1 cut(s) 79
Eco47I GGWCC 2 cut(s) 180, 205
Eco53kI GAGCTC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 561
EcoICRI GAGCTC 1 cut(s) 77
EcoRII CCWGG 2 cut(s) 182, 228
EcoT14I CCWWGG 1 cut(s) 258
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 3 cut(s) 131, 217, 584
FaiI YATR 4 cut(s) 119, 129, 215, 582
FaqI GGGAC 2 cut(s) 416, 591
FatI CATG 3 cut(s) 127, 213, 580
FokI GGATG 1 cut(s) 293
FriOI GRGCYC 1 cut(s) 79
FspBI CTAG 1 cut(s) 80
GlaI GCGC 3 cut(s) 8, 188, 218
GsuI CTGGAG 1 cut(s) 93
HapII CCGG 1 cut(s) 250
HhaI GCGC 3 cut(s) 9, 189, 219
Hin1II CATG 3 cut(s) 131, 217, 584
Hin6I GCGC 3 cut(s) 7, 187, 217
HinP1I GCGC 3 cut(s) 7, 187, 217
HpaII CCGG 1 cut(s) 250
HphI GGTGA 6 cut(s) 296, 341, 404, 515, 560, 572
Hpy166II GTNNAC 2 cut(s) 133, 142
Hpy188I TCNGA 2 cut(s) 22, 58
Hpy188III TCNNGA 2 cut(s) 46, 72
Hpy8I GTNNAC 2 cut(s) 133, 142
HpyAV CCTTC 3 cut(s) 50, 175, 271
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4V TGCA 2 cut(s) 142, 310
HpyF3I CTNAG 4 cut(s) 57, 65, 136, 406
Hsp92II CATG 3 cut(s) 131, 217, 584
HspAI GCGC 3 cut(s) 7, 187, 217
Kzo9I GATC 1 cut(s) 246
LmnI GCTCC 2 cut(s) 74, 337
MaeI CTAG 1 cut(s) 80
MaeIII GTNAC 1 cut(s) 160
MalI GATC 1 cut(s) 248
MboI GATC 1 cut(s) 246
MflI RGATCY 1 cut(s) 246
MhlI GDGCHC 2 cut(s) 79, 144
MluCI AATT 6 cut(s) 49, 107, 301, 527, 570, 603
MnlI CCTC 5 cut(s) 351, 421, 430, 517, 568
MroXI GAANNNNTTC 1 cut(s) 107
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 585
MspI CCGG 1 cut(s) 250
MspR9I CCNGG 3 cut(s) 184, 230, 251
MvaI CCWGG 2 cut(s) 184, 230
MvnI CGCG 1 cut(s) 189
NciI CCSGG 1 cut(s) 251
NdeII GATC 1 cut(s) 246
NlaIII CATG 3 cut(s) 131, 217, 584
NspI RCATGY 2 cut(s) 131, 217
PciI ACATGT 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 107
PflMI CCANNNNNTGG 1 cut(s) 229
PscI ACATGT 1 cut(s) 127
Psp124BI GAGCTC 1 cut(s) 79
Psp6I CCWGG 2 cut(s) 182, 228
PspGI CCWGG 2 cut(s) 182, 228
PspPI GGNCC 2 cut(s) 180, 205
PstNI CAGNNNCTG 1 cut(s) 229
PsuI RGATCY 1 cut(s) 246
RsaI GTAC 3 cut(s) 227, 314, 496
RsaNI GTAC 3 cut(s) 226, 313, 495
RseI CAYNNNNRTG 1 cut(s) 585
SacI GAGCTC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 237
Sau3AI GATC 1 cut(s) 246
Sau96I GGNCC 2 cut(s) 180, 205
ScrFI CCNGG 3 cut(s) 184, 230, 251
SduI GDGCHC 2 cut(s) 79, 144
SinI GGWCC 2 cut(s) 180, 205
SmiMI CAYNNNNRTG 1 cut(s) 585
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 6 cut(s) 49, 107, 301, 527, 570, 603
SsiI CCGC 1 cut(s) 122
SspMI CTAG 1 cut(s) 80
SstI GAGCTC 1 cut(s) 79
StyD4I CCNGG 3 cut(s) 182, 228, 249
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 1 cut(s) 347
TasI AATT 6 cut(s) 49, 107, 301, 527, 570, 603
TatI WGTACW 1 cut(s) 312
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 2 cut(s) 144, 299
TspDTI ATGAA 2 cut(s) 17, 465
TspRI CASTG 2 cut(s) 144, 299
Van91I CCANNNNNTGG 1 cut(s) 229
VneI GTGCAC 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 180, 205
XapI RAATTY 2 cut(s) 107, 301
XceI RCATGY 2 cut(s) 131, 217
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.