Rorug01G0110200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003279
Physical Location & Seq
Forward (+)
19726882 .. 19729268
2387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0110200.1

Sequence Viewer

Length: 1263 bp
ATGGCAGAGACAGTGAGCGCAAGTGCAATAGTTCTTCAAGTCCTGGGCAGAGAAAACTATGAGGATTGGAGTGTACGGGTCAGAACCTATTTGATGGCAAAAGACCTTTGGGATGTGGTTGAAGCCCGTGGTGAACCACCTAAACCTGAGAAGGGTGAAGCTAAGTATAAGACCTGGAGGAAAAACAATGCAGAGGCTCTGCATGCAATTCAAATCTCTTGCGGTCCTGATACATTTCCTTTGATTCGTGACAAAATCACGGCAAAAACTGCGTGGAACACTTTGGTAGCCGAGTTCAAGCCAGATTTACAGAAAACTCCAGAGACAGTGACCGGAAGTGCAATCGTTCTTCAGGGCAGAGATAACTATGAGGATTGGAGTGTACGGGTCAGAGACTATTTGCTGGCAAAAGATCTTTGGGATGTGGTTGAAGCCCCTGGTGAACCACCTAAACCTCAGCAGGGTGAAGCTATATATAAGACCTGGACGGAAAACAATGCAGAGGCTCTGCATGCAATTCAAAATTCTTGCGGTCCTGATACGTTGCCTTTGATCCGTGACAAAATCACGGCAAAAACTGCGTGGAACACTTTGATAGCCGCGTTCAAACCAGATTTACAGAAAATTCCAGGAAATGCCAACAACTTTCATCAATATGAAGCTCTGTTTAGAGCTGTGAAGGATGGGGACTGCAACGCCACTAATGAGTTTCTTGAAAAAAATAAGAATGCAGTGAGTGCCCGAATTACTTACTTAGGGAAAACAGCTCTCCACACCGCAGCCGATGCCGGGCGGACAAAAATAGTGGAATTATTGGTGAAAAAGATGAGAAAGGAAGACTTGGTGATACAAGGGAATGATGGCAAGACTGCTCTTGTTGTTGCTATAAATAGAGGAGACATGGAAATGGTTAAATGCATGGTTAGAAAGAACAAAAATATCGTTCGCATTCTTGATCGTTCCAACAGACTTCCTGTTGTCTTGGCTTATCGAAATAGCTTTTGGGAAATAGCTAGGTATCTCTATTCTATTACTCCACCGGAAGATTTAAATGGCTCTATTAATGGCGCAACACTAGTTTCTCAATGTTTTTATGCACAACAATATGATATTGCGTGGGATCTAATTCACCGGTGCCCAAACTTAATCACTACTAAAGACCTCTTTGAGGAATCTCCATTATTTGCATTGGCTTCTGTCCCTTCTGCATTCCCGAGTGGCATGCCACTAATATTCTGGAAAAAGTGGATCTATAACTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

420

Amino Acids

47.42

Weight (kDa)

8.3

Isoelectric Point (pI)

27.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4219 PF13961 15 - 41 2.1e-09 Domain of unknown function (DUF4219)
Retrotran_gag_2 PF14223 27 - 100 2.4e-11 gag-polypeptide of LTR copia-type
DUF4219 PF13961 120 - 144 2.9e-08 Domain of unknown function (DUF4219)
Retrotran_gag_2 PF14223 132 - 203 6.9e-09 gag-polypeptide of LTR copia-type
Ank_2 PF12796 217 - 275 1.4e-06 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1134
AccII CGCG 1 cut(s) 602
AciI CCGC 5 cut(s) 222, 531, 600, 777, 793
AclWI GGATC 3 cut(s) 547, 1128, 1256
AcsI RAATTY 2 cut(s) 523, 624
AcuI CTGAAG 1 cut(s) 335
AfaI GTAC 2 cut(s) 75, 384
AfiI CCNNNNNNNGG 4 cut(s) 152, 461, 789, 1168
AgeI ACCGGT 1 cut(s) 1131
AgsI TTSAA 8 cut(s) 38, 122, 212, 298, 431, 521, 607, 716
AhlI ACTAGT 1 cut(s) 1075
AjnI CCWGG 5 cut(s) 42, 173, 436, 482, 628
AjuI GAANNNNNNNTTGG 2 cut(s) 985, 1017
AluBI AGCT 7 cut(s) 161, 470, 662, 674, 767, 999, 1013
AluI AGCT 7 cut(s) 161, 470, 662, 674, 767, 999, 1013
Alw26I GTCTC 4 cut(s) 2, 317, 387, 891
AlwI GGATC 3 cut(s) 547, 1128, 1256
Ama87I CYCGRG 1 cut(s) 1213
ApeKI GCWGC 1 cut(s) 779
ApoI RAATTY 2 cut(s) 523, 624
AseI ATTAAT 1 cut(s) 1062
AsiGI ACCGGT 1 cut(s) 1131
AspLEI GCGC 2 cut(s) 20, 1070
AspS9I GGNCC 2 cut(s) 224, 533
AsuC2I CCSGG 1 cut(s) 790
AsuHPI GGTGA 7 cut(s) 143, 167, 452, 476, 829, 856, 1121
AvaI CYCGRG 1 cut(s) 1213
AvaII GGWCC 2 cut(s) 224, 533
BaeGI GKGCMC 2 cut(s) 742, 1139
BanI GGYRCC 1 cut(s) 1134
BbsI GAAGAC 1 cut(s) 843
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 1 cut(s) 791
BccI CCATC 3 cut(s) 88, 677, 854
BceAI ACGGC 2 cut(s) 276, 585
BcgI CGANNNNNNTGC 2 cut(s) 1204, 1238
BciT130I CCWGG 5 cut(s) 44, 175, 438, 484, 630
BcnI CCSGG 1 cut(s) 790
BcoDI GTCTC 4 cut(s) 2, 317, 387, 891
BcuI ACTAGT 1 cut(s) 1075
BfaI CTAG 2 cut(s) 1014, 1076
BglII AGATCT 1 cut(s) 412
BisI GCNGC 2 cut(s) 600, 780
BlsI GCNGC 2 cut(s) 601, 781
Bme1390I CCNGG 6 cut(s) 44, 175, 438, 484, 630, 790
Bme18I GGWCC 2 cut(s) 224, 533
BmeT110I CYCGRG 1 cut(s) 1213
BmgT120I GGNCC 2 cut(s) 224, 533
BmiI GGNNCC 1 cut(s) 1136
BmrFI CCNGG 6 cut(s) 44, 175, 438, 484, 630, 790
BmsI GCATC 1 cut(s) 775
BpiI GAAGAC 1 cut(s) 843
BpmI CTGGAG 2 cut(s) 196, 303
Bpu10I CCTNAGC 1 cut(s) 456
BpuMI CCSGG 1 cut(s) 790
BsaJI CCNNGG 3 cut(s) 43, 127, 436
BsaWI WCCGGW 3 cut(s) 332, 1039, 1131
Bsc4I CCNNNNNNNGG 4 cut(s) 152, 461, 789, 1168
Bse118I RCCGGY 1 cut(s) 1131
BseBI CCWGG 5 cut(s) 44, 175, 438, 484, 630
BseDI CCNNGG 3 cut(s) 43, 127, 436
BseGI GGATG 3 cut(s) 118, 427, 688
BseLI CCNNNNNNNGG 4 cut(s) 152, 461, 789, 1168
BseMII CTCAG 2 cut(s) 138, 470
BseRI GAGGAG 1 cut(s) 909
BseSI GKGCMC 2 cut(s) 742, 1139
BseXI GCAGC 1 cut(s) 791
Bsh1236I CGCG 1 cut(s) 602
BshNI GGYRCC 1 cut(s) 1134
BshTI ACCGGT 1 cut(s) 1131
BsiHKCI CYCGRG 1 cut(s) 1213
BsiSI CCGG 4 cut(s) 333, 789, 1040, 1132
BslFI GGGAC 2 cut(s) 701, 1184
BslI CCNNNNNNNGG 4 cut(s) 152, 461, 789, 1168
BsmAI GTCTC 4 cut(s) 2, 317, 387, 891
BsmFI GGGAC 2 cut(s) 701, 1184
BsmI GAATGC 3 cut(s) 733, 948, 1208
BsoBI CYCGRG 1 cut(s) 1213
Bsp1286I GDGCHC 2 cut(s) 742, 1139
Bsp143I GATC 5 cut(s) 412, 552, 955, 1120, 1248
BspACI CCGC 5 cut(s) 222, 531, 600, 777, 793
BspCNI CTCAG 2 cut(s) 139, 469
BspFNI CGCG 1 cut(s) 602
BspLI GGNNCC 1 cut(s) 1136
BspPI GGATC 3 cut(s) 547, 1128, 1256
BspT107I GGYRCC 1 cut(s) 1134
BsrFI RCCGGY 1 cut(s) 1131
BssAI RCCGGY 1 cut(s) 1131
BssECI CCNNGG 3 cut(s) 43, 127, 436
BssMI GATC 5 cut(s) 412, 552, 955, 1120, 1248
Bst2UI CCWGG 5 cut(s) 44, 175, 438, 484, 630
Bst4CI ACNGT 3 cut(s) 13, 328, 1259
BstAPI GCANNNNNTGC 4 cut(s) 269, 578, 737, 785
BstC8I GCNNGC 4 cut(s) 204, 405, 513, 1223
BstDEI CTNAG 4 cut(s) 147, 162, 456, 754
BstDSI CCRYGG 1 cut(s) 127
BstENI CCTNNNNNAGG 1 cut(s) 1166
BstF5I GGATG 3 cut(s) 118, 427, 688
BstFNI CGCG 1 cut(s) 602
BstHHI GCGC 2 cut(s) 20, 1070
BstKTI GATC 5 cut(s) 415, 555, 958, 1123, 1251
BstMAI GTCTC 4 cut(s) 2, 317, 387, 891
BstMBI GATC 5 cut(s) 412, 552, 955, 1120, 1248
BstMWI GCNNNNNNNGC 6 cut(s) 203, 269, 512, 578, 737, 785
BstNI CCWGG 5 cut(s) 44, 175, 438, 484, 630
BstNSI RCATGY 3 cut(s) 206, 515, 1225
BstSCI CCNGG 6 cut(s) 42, 173, 436, 482, 628, 788
BstSLI GKGCMC 2 cut(s) 742, 1139
BstUI CGCG 1 cut(s) 602
BstV1I GCAGC 1 cut(s) 791
BstV2I GAAGAC 1 cut(s) 843
BstX2I RGATCY 3 cut(s) 412, 1120, 1248
BstYI RGATCY 3 cut(s) 412, 1120, 1248
BtgI CCRYGG 1 cut(s) 127
BtsCI GGATG 3 cut(s) 118, 427, 688
BtsI GCAGTG 1 cut(s) 738
BtsIMutI CAGTG 3 cut(s) 18, 333, 738
Cac8I GCNNGC 4 cut(s) 204, 405, 513, 1223
CfoI GCGC 2 cut(s) 20, 1070
Cfr10I RCCGGY 1 cut(s) 1131
Cfr13I GGNCC 2 cut(s) 224, 533
Csp6I GTAC 2 cut(s) 74, 383
CspAI ACCGGT 1 cut(s) 1131
CspCI CAANNNNNGTGG 2 cut(s) 786, 821
CviAII CATG 5 cut(s) 203, 512, 901, 919, 1222
CviQI GTAC 2 cut(s) 74, 383
DdeI CTNAG 4 cut(s) 147, 162, 456, 754
DpnI GATC 5 cut(s) 414, 554, 957, 1122, 1250
DpnII GATC 5 cut(s) 412, 552, 955, 1120, 1248
DraI TTTAAA 1 cut(s) 1050
EciI GGCGGA 1 cut(s) 808
Eco47I GGWCC 2 cut(s) 224, 533
Eco57I CTGAAG 1 cut(s) 335
Eco88I CYCGRG 1 cut(s) 1213
EcoNI CCTNNNNNAGG 1 cut(s) 1166
EcoRII CCWGG 5 cut(s) 42, 173, 436, 482, 628
EcoT22I ATGCAT 1 cut(s) 920
FaeI CATG 5 cut(s) 206, 515, 904, 922, 1225
FalI AAGNNNNNCTT 2 cut(s) 824, 856
FaqI GGGAC 2 cut(s) 701, 1184
FatI CATG 5 cut(s) 202, 511, 900, 918, 1221
Fnu4HI GCNGC 2 cut(s) 600, 780
FokI GGATG 3 cut(s) 125, 434, 695
Fsp4HI GCNGC 2 cut(s) 600, 780
FspBI CTAG 2 cut(s) 1014, 1076
GlaI GCGC 2 cut(s) 19, 1069
GluI GCNGC 2 cut(s) 600, 780
GsuI CTGGAG 2 cut(s) 196, 303
HapII CCGG 4 cut(s) 333, 789, 1040, 1132
HhaI GCGC 2 cut(s) 20, 1070
Hin1II CATG 5 cut(s) 206, 515, 904, 922, 1225
Hin6I GCGC 2 cut(s) 18, 1068
HinP1I GCGC 2 cut(s) 18, 1068
HinfI GANTC 2 cut(s) 244, 1172
HpaII CCGG 4 cut(s) 333, 789, 1040, 1132
HphI GGTGA 7 cut(s) 143, 167, 452, 476, 829, 856, 1121
Hpy166II GTNNAC 4 cut(s) 74, 134, 383, 443
Hpy188I TCNGA 2 cut(s) 83, 392
Hpy188III TCNNGA 8 cut(s) 227, 248, 320, 536, 713, 953, 1213, 1237
Hpy8I GTNNAC 4 cut(s) 74, 134, 383, 443
HpyAV CCTTC 3 cut(s) 145, 673, 1212
HpyCH4III ACNGT 3 cut(s) 13, 328, 1259
HpyCH4IV ACGT 1 cut(s) 542
HpyF10VI GCNNNNNNNGC 6 cut(s) 203, 269, 512, 578, 737, 785
HpyF3I CTNAG 4 cut(s) 147, 162, 456, 754
HpySE526I ACGT 1 cut(s) 542
Hsp92II CATG 5 cut(s) 206, 515, 904, 922, 1225
HspAI GCGC 2 cut(s) 18, 1068
Kzo9I GATC 5 cut(s) 412, 552, 955, 1120, 1248
Lsp1109I GCAGC 1 cut(s) 791
LweI GCATC 1 cut(s) 775
MaeI CTAG 2 cut(s) 1014, 1076
MaeII ACGT 1 cut(s) 542
MaeIII GTNAC 3 cut(s) 248, 328, 557
MalI GATC 5 cut(s) 414, 554, 957, 1122, 1250
MboI GATC 5 cut(s) 412, 552, 955, 1120, 1248
MboII GAAGA 4 cut(s) 26, 341, 848, 1055
MflI RGATCY 3 cut(s) 412, 1120, 1248
MhlI GDGCHC 2 cut(s) 742, 1139
MluCI AATT 7 cut(s) 207, 516, 523, 624, 744, 809, 1125
MmeI TCCRAC 1 cut(s) 987
MnlI CCTC 9 cut(s) 55, 171, 187, 364, 465, 496, 887, 1162, 1172
Mph1103I ATGCAT 1 cut(s) 920
MseI TTAA 4 cut(s) 912, 1049, 1062, 1145
MslI CAYNNNNRTG 2 cut(s) 654, 905
MspI CCGG 4 cut(s) 333, 789, 1040, 1132
MspR9I CCNGG 6 cut(s) 44, 175, 438, 484, 630, 790
Mva1269I GAATGC 3 cut(s) 733, 948, 1208
MvaI CCWGG 5 cut(s) 44, 175, 438, 484, 630
MvnI CGCG 1 cut(s) 602
MwoI GCNNNNNNNGC 6 cut(s) 203, 269, 512, 578, 737, 785
NciI CCSGG 1 cut(s) 790
NdeII GATC 5 cut(s) 412, 552, 955, 1120, 1248
NlaIII CATG 5 cut(s) 206, 515, 904, 922, 1225
NlaIV GGNNCC 1 cut(s) 1136
NmeAIII GCCGAG 1 cut(s) 316
NmuCI GTSAC 3 cut(s) 248, 328, 557
NsiI ATGCAT 1 cut(s) 920
NspI RCATGY 3 cut(s) 206, 515, 1225
PaeI GCATGC 3 cut(s) 206, 515, 1225
PctI GAATGC 3 cut(s) 733, 948, 1208
PfeI GAWTC 2 cut(s) 244, 1172
PfoI TCCNGGA 1 cut(s) 628
PinAI ACCGGT 1 cut(s) 1131
PkrI GCNGC 2 cut(s) 601, 781
PshBI ATTAAT 1 cut(s) 1062
Psp6I CCWGG 5 cut(s) 42, 173, 436, 482, 628
PspGI CCWGG 5 cut(s) 42, 173, 436, 482, 628
PspN4I GGNNCC 1 cut(s) 1136
PspPI GGNCC 2 cut(s) 224, 533
PsuI RGATCY 3 cut(s) 412, 1120, 1248
RsaI GTAC 2 cut(s) 75, 384
RsaNI GTAC 2 cut(s) 74, 383
RseI CAYNNNNRTG 2 cut(s) 654, 905
SaqAI TTAA 4 cut(s) 912, 1049, 1062, 1145
SatI GCNGC 2 cut(s) 600, 780
Sau3AI GATC 5 cut(s) 412, 552, 955, 1120, 1248
Sau96I GGNCC 2 cut(s) 224, 533
ScrFI CCNGG 6 cut(s) 44, 175, 438, 484, 630, 790
SduI GDGCHC 2 cut(s) 742, 1139
SfaNI GCATC 1 cut(s) 775
SgrAI CRCCGGYG 1 cut(s) 1131
SinI GGWCC 2 cut(s) 224, 533
SmiI ATTTAAAT 1 cut(s) 1050
SmiMI CAYNNNNRTG 2 cut(s) 654, 905
SpeI ACTAGT 1 cut(s) 1075
SphI GCATGC 3 cut(s) 206, 515, 1225
Sse9I AATT 7 cut(s) 207, 516, 523, 624, 744, 809, 1125
SsiI CCGC 5 cut(s) 222, 531, 600, 777, 793
SspI AATATT 1 cut(s) 1233
SspMI CTAG 2 cut(s) 1014, 1076
StyD4I CCNGG 6 cut(s) 42, 173, 436, 482, 628, 788
SwaI ATTTAAAT 1 cut(s) 1050
TaaI ACNGT 3 cut(s) 13, 328, 1259
TaiI ACGT 1 cut(s) 545
TaqI TCGA 1 cut(s) 991
TasI AATT 7 cut(s) 207, 516, 523, 624, 744, 809, 1125
TauI GCSGC 1 cut(s) 602
TfiI GAWTC 2 cut(s) 244, 1172
Tru1I TTAA 4 cut(s) 912, 1049, 1062, 1145
Tru9I TTAA 4 cut(s) 912, 1049, 1062, 1145
TscAI CASTG 3 cut(s) 18, 333, 738
TseFI GTSAC 3 cut(s) 248, 328, 557
TseI GCWGC 1 cut(s) 779
Tsp45I GTSAC 3 cut(s) 248, 328, 557
TspDTI ATGAA 2 cut(s) 638, 672
TspGWI ACGGA 2 cut(s) 503, 545
TspRI CASTG 3 cut(s) 18, 333, 738
VpaK11BI GGWCC 2 cut(s) 224, 533
VspI ATTAAT 1 cut(s) 1062
XagI CCTNNNNNAGG 1 cut(s) 1166
XapI RAATTY 2 cut(s) 523, 624
XceI RCATGY 3 cut(s) 206, 515, 1225
XcmI CCANNNNNNNNNTGG 1 cut(s) 1233
XspI CTAG 2 cut(s) 1014, 1076
Zsp2I ATGCAT 1 cut(s) 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.