Rorug01G0109500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003279
Physical Location & Seq
Forward (+)
19634781 .. 19635589
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0109500.1

Sequence Viewer

Length: 600 bp
ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGTATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGGGAACTAGTTCTCTTGGTACTGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGACTACTTCCGAGGAAGGTAGTGCACATGATTACTATTTCGGTGGCTCAGGCGGTTACAACCGTGGATCTCCAGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

21.86

Weight (kDa)

5.08

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 3.7e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 468
AccIII TCCGGA 1 cut(s) 584
AciI CCGC 1 cut(s) 534
AclWI GGATC 4 cut(s) 141, 333, 346, 556
AcuI CTGAAG 1 cut(s) 500
AcyI GRCGYC 1 cut(s) 465
AfaI GTAC 2 cut(s) 91, 328
AfiI CCNNNNNNNGG 1 cut(s) 455
AgsI TTSAA 1 cut(s) 431
AhlI ACTAGT 2 cut(s) 314, 365
AjnI CCWGG 2 cut(s) 92, 420
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 4 cut(s) 53, 199, 568, 590
AluI AGCT 4 cut(s) 53, 199, 568, 590
Alw21I GWGCWC 3 cut(s) 456, 508, 570
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 2 cut(s) 452, 504
AlwI GGATC 4 cut(s) 141, 333, 346, 556
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 584
ApaLI GTGCAC 2 cut(s) 452, 504
ApeKI GCWGC 3 cut(s) 50, 293, 590
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
Asp700I GAANNNNTTC 1 cut(s) 316
AspS9I GGNCC 1 cut(s) 360
AsuHPI GGTGA 1 cut(s) 410
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 360
BaeGI GKGCMC 4 cut(s) 164, 306, 456, 508
BamHI GGATCC 1 cut(s) 338
BanII GRGCYC 2 cut(s) 262, 570
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 488
Bbv12I GWGCWC 3 cut(s) 456, 508, 570
BbvI GCAGC 3 cut(s) 62, 280, 577
BccI CCATC 2 cut(s) 374, 589
BceAI ACGGC 2 cut(s) 72, 472
BciT130I CCWGG 2 cut(s) 94, 422
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 2 cut(s) 314, 365
BfaI CTAG 3 cut(s) 315, 366, 598
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 186
BisI GCNGC 3 cut(s) 51, 294, 591
BlpI GCTNAGC 1 cut(s) 569
BlsI GCNGC 3 cut(s) 52, 295, 592
Bme1390I CCNGG 2 cut(s) 94, 422
Bme18I GGWCC 1 cut(s) 360
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 360
BmiI GGNNCC 4 cut(s) 6, 245, 340, 361
BmrFI CCNGG 2 cut(s) 94, 422
BpiI GAAGAC 1 cut(s) 488
BpmI CTGGAG 4 cut(s) 93, 179, 282, 537
Bpu10I CCTNAGC 1 cut(s) 529
Bpu1102I GCTNAGC 1 cut(s) 569
BpuEI CTTGAG 2 cut(s) 113, 584
BsaHI GRCGYC 1 cut(s) 465
BsaJI CCNNGG 3 cut(s) 306, 492, 544
BsaWI WCCGGW 1 cut(s) 584
Bsc4I CCNNNNNNNGG 1 cut(s) 455
Bse1I ACTGG 3 cut(s) 205, 299, 554
BseAI TCCGGA 1 cut(s) 584
BseBI CCWGG 2 cut(s) 94, 422
BseDI CCNNGG 3 cut(s) 306, 492, 544
BseGI GGATG 2 cut(s) 392, 581
BseLI CCNNNNNNNGG 1 cut(s) 455
BseMII CTCAG 2 cut(s) 543, 583
BseNI ACTGG 3 cut(s) 205, 299, 554
BseRI GAGGAG 3 cut(s) 44, 423, 426
BseSI GKGCMC 4 cut(s) 164, 306, 456, 508
BseXI GCAGC 3 cut(s) 62, 280, 577
BsiHKAI GWGCWC 3 cut(s) 456, 508, 570
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 585
BslI CCNNNNNNNGG 1 cut(s) 455
BsmAI GTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 6 cut(s) 164, 262, 306, 456, 508, 570
Bsp13I TCCGGA 1 cut(s) 584
Bsp143I GATC 5 cut(s) 133, 186, 338, 415, 548
Bsp1720I GCTNAGC 1 cut(s) 569
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 1 cut(s) 534
BspCNI CTCAG 2 cut(s) 542, 582
BspEI TCCGGA 1 cut(s) 584
BspLI GGNNCC 4 cut(s) 6, 245, 340, 361
BspPI GGATC 4 cut(s) 141, 333, 346, 556
BsrI ACTGG 3 cut(s) 205, 299, 554
BssECI CCNNGG 3 cut(s) 306, 492, 544
BssMI GATC 5 cut(s) 133, 186, 338, 415, 548
BssNI GRCGYC 1 cut(s) 465
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 94, 422
Bst4CI ACNGT 1 cut(s) 545
Bst6I CTCTTC 1 cut(s) 441
BstACI GRCGYC 1 cut(s) 465
BstDEI CTNAG 2 cut(s) 529, 569
BstDSI CCRYGG 2 cut(s) 306, 544
BstEII GGTNACC 1 cut(s) 473
BstF5I GGATG 2 cut(s) 392, 581
BstKTI GATC 5 cut(s) 136, 189, 341, 418, 551
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 5 cut(s) 133, 186, 338, 415, 548
BstNI CCWGG 2 cut(s) 94, 422
BstPI GGTNACC 1 cut(s) 473
BstSCI CCNGG 2 cut(s) 92, 420
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 4 cut(s) 164, 306, 456, 508
BstV1I GCAGC 3 cut(s) 62, 280, 577
BstV2I GAAGAC 1 cut(s) 488
BstX2I RGATCY 4 cut(s) 133, 186, 338, 548
BstXI CCANNNNNNTGG 1 cut(s) 53
BstYI RGATCY 4 cut(s) 133, 186, 338, 548
BtgI CCRYGG 2 cut(s) 306, 544
BtsCI GGATG 2 cut(s) 392, 581
BtsIMutI CAGTG 1 cut(s) 306
Cfr13I GGNCC 1 cut(s) 360
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 2 cut(s) 90, 327
CviAII CATG 3 cut(s) 70, 307, 509
CviJI RGCY 9 cut(s) 53, 87, 199, 260, 293, 528, 568, 573, 590
CviKI_1 RGCY 9 cut(s) 53, 87, 199, 260, 293, 528, 568, 573, 590
CviQI GTAC 2 cut(s) 90, 327
DdeI CTNAG 2 cut(s) 529, 569
DpnI GATC 5 cut(s) 135, 188, 340, 417, 550
DpnII GATC 5 cut(s) 133, 186, 338, 415, 548
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
Ecl136II GAGCTC 1 cut(s) 568
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 262, 570
Eco47I GGWCC 1 cut(s) 360
Eco53kI GAGCTC 1 cut(s) 568
Eco57I CTGAAG 1 cut(s) 500
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 473
EcoICRI GAGCTC 1 cut(s) 568
EcoO65I GGTNACC 1 cut(s) 473
EcoRII CCWGG 2 cut(s) 92, 420
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 262, 570
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 3 cut(s) 73, 310, 512
FaiI YATR 6 cut(s) 71, 144, 210, 216, 308, 510
FatI CATG 3 cut(s) 69, 306, 508
Fnu4HI GCNGC 3 cut(s) 51, 294, 591
FokI GGATG 2 cut(s) 379, 568
FriOI GRGCYC 2 cut(s) 262, 570
Fsp4HI GCNGC 3 cut(s) 51, 294, 591
FspBI CTAG 3 cut(s) 315, 366, 598
GluI GCNGC 3 cut(s) 51, 294, 591
GsuI CTGGAG 4 cut(s) 93, 179, 282, 537
HapII CCGG 1 cut(s) 585
Hin1I GRCGYC 1 cut(s) 465
Hin1II CATG 3 cut(s) 73, 310, 512
HinfI GANTC 3 cut(s) 100, 123, 178
HpaII CCGG 1 cut(s) 585
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 3 cut(s) 363, 454, 506
Hpy188I TCNGA 1 cut(s) 493
Hpy188III TCNNGA 6 cut(s) 110, 182, 247, 263, 563, 585
Hpy8I GTNNAC 3 cut(s) 363, 454, 506
HpyAV CCTTC 1 cut(s) 491
HpyCH4III ACNGT 1 cut(s) 545
HpyCH4IV ACGT 2 cut(s) 252, 465
HpyCH4V TGCA 3 cut(s) 400, 454, 506
HpyF3I CTNAG 2 cut(s) 529, 569
HpySE526I ACGT 2 cut(s) 252, 465
Hsp92I GRCGYC 1 cut(s) 465
Hsp92II CATG 3 cut(s) 73, 310, 512
Kpn2I TCCGGA 1 cut(s) 584
Kzo9I GATC 5 cut(s) 133, 186, 338, 415, 548
LmnI GCTCC 2 cut(s) 301, 587
Lsp1109I GCAGC 3 cut(s) 62, 280, 577
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 3 cut(s) 315, 366, 598
MaeII ACGT 2 cut(s) 252, 465
MaeIII GTNAC 2 cut(s) 473, 536
MalI GATC 5 cut(s) 135, 188, 340, 417, 550
MboI GATC 5 cut(s) 133, 186, 338, 415, 548
MboII GAAGA 2 cut(s) 428, 493
MflI RGATCY 4 cut(s) 133, 186, 338, 548
MhlI GDGCHC 6 cut(s) 164, 262, 306, 456, 508, 570
MluCI AATT 1 cut(s) 352
MroI TCCGGA 1 cut(s) 584
MroXI GAANNNNTTC 1 cut(s) 316
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 2 cut(s) 53, 199
MspI CCGG 1 cut(s) 585
MspR9I CCNGG 2 cut(s) 94, 422
MvaI CCWGG 2 cut(s) 94, 422
NcoI CCATGG 1 cut(s) 306
NdeII GATC 5 cut(s) 133, 186, 338, 415, 548
NlaIII CATG 3 cut(s) 73, 310, 512
NlaIV GGNNCC 4 cut(s) 6, 245, 340, 361
PaeR7I CTCGAG 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 462
PdmI GAANNNNTTC 1 cut(s) 316
PfeI GAWTC 3 cut(s) 100, 123, 178
PkrI GCNGC 3 cut(s) 52, 295, 592
Psp124BI GAGCTC 1 cut(s) 570
Psp6I CCWGG 2 cut(s) 92, 420
PspEI GGTNACC 1 cut(s) 473
PspGI CCWGG 2 cut(s) 92, 420
PspN4I GGNNCC 4 cut(s) 6, 245, 340, 361
PspPI GGNCC 1 cut(s) 360
PsuI RGATCY 4 cut(s) 133, 186, 338, 548
PvuII CAGCTG 2 cut(s) 53, 199
RsaI GTAC 2 cut(s) 91, 328
RsaNI GTAC 2 cut(s) 90, 327
SacI GAGCTC 1 cut(s) 570
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 51, 294, 591
Sau3AI GATC 5 cut(s) 133, 186, 338, 415, 548
Sau96I GGNCC 1 cut(s) 360
ScrFI CCNGG 2 cut(s) 94, 422
SduI GDGCHC 6 cut(s) 164, 262, 306, 456, 508, 570
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 360
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 3 cut(s) 128, 261, 563
SmoI CTYRAG 3 cut(s) 128, 261, 563
SpeI ACTAGT 2 cut(s) 314, 365
Sse9I AATT 1 cut(s) 352
SsiI CCGC 1 cut(s) 534
SspMI CTAG 3 cut(s) 315, 366, 598
SstI GAGCTC 1 cut(s) 570
StyD4I CCNGG 2 cut(s) 92, 420
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 545
TaiI ACGT 2 cut(s) 255, 468
TaqI TCGA 1 cut(s) 262
TasI AATT 1 cut(s) 352
TfiI GAWTC 3 cut(s) 100, 123, 178
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 306
TseI GCWGC 3 cut(s) 50, 293, 590
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 1 cut(s) 306
VneI GTGCAC 2 cut(s) 452, 504
VpaK11BI GGWCC 1 cut(s) 360
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 3 cut(s) 315, 366, 598
ZraI GACGTC 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.