RLG00000029599

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003279
Physical Location & Seq
Forward (+)
40984291 .. 40984752
462 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029599

Sequence Viewer

Length: 378 bp
ATGCGCCACCATTACCTGGGAGTCAAGCAGAAGATCCGCGTCTCTAAGGACGAGTTCAACTGGAAGGATGGTGAAAATCACAGGGAGAATTTCTTGAAGTACAAGGAAGTGTTTGGTGATGTGGAGCTTGATGATTTAGAGGAAGAAGAAGATGATGAAGAAGAAGAAGAACATTTGGAAGAAGAAGAAGAAGAAGAAGAAGATGGCACTGGTGGTGATGACGATAATCGTGGCAAGGAATTGGGTAAAACTGAAATTGGTGAGTTTGGGGGTGAAAGGGAAATTGGGGACATGGAAATGGCTGAAAAAAGGAAATTGAGTAAGGTTGGATTGCATAGGAGGTTGGGGTTGATGAGTGCTCAGATGTTGGACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.67

Weight (kDa)

4.46

Isoelectric Point (pI)

62.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 16
AccII CGCG 1 cut(s) 39
AciI CCGC 1 cut(s) 37
AclWI GGATC 1 cut(s) 28
AcsI RAATTY 1 cut(s) 88
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 2 cut(s) 58, 97
AjnI CCWGG 1 cut(s) 15
AjuI GAANNNNNNNTTGG 2 cut(s) 267, 299
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 1 cut(s) 28
ApoI RAATTY 1 cut(s) 88
AspLEI GCGC 1 cut(s) 6
AsuHPI GGTGA 5 cut(s) 83, 128, 227, 272, 284
Bbv12I GWGCWC 1 cut(s) 361
BccI CCATC 2 cut(s) 62, 197
BciT130I CCWGG 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 46
Bme1390I CCNGG 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 65, 214
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 2 cut(s) 65, 214
Bsh1236I CGCG 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 361
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 1 cut(s) 46
BsmBI CGTCTC 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 361
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 373
BspFNI CGCG 1 cut(s) 39
BspPI GGATC 1 cut(s) 28
BsrI ACTGG 2 cut(s) 65, 214
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 17
BstDEI CTNAG 2 cut(s) 45, 360
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 1 cut(s) 39
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 1 cut(s) 36
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 1 cut(s) 33
BstNI CCWGG 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 15
BstUI CGCG 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 207
CfoI GCGC 1 cut(s) 6
CseI GACGC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 100
CviAII CATG 1 cut(s) 292
CviJI RGCY 2 cut(s) 127, 302
CviKI_1 RGCY 2 cut(s) 127, 302
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 2 cut(s) 45, 360
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 15
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 1 cut(s) 295
FaiI YATR 2 cut(s) 293, 336
FaqI GGGAC 1 cut(s) 302
FatI CATG 1 cut(s) 291
FokI GGATG 1 cut(s) 80
GlaI GCGC 1 cut(s) 5
HgaI GACGC 1 cut(s) 28
HhaI GCGC 1 cut(s) 6
Hin1II CATG 1 cut(s) 295
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 1 cut(s) 21
HphI GGTGA 5 cut(s) 83, 128, 227, 272, 284
Hpy188I TCNGA 1 cut(s) 363
Hpy188III TCNNGA 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 334
HpyF3I CTNAG 2 cut(s) 45, 360
Hsp92II CATG 1 cut(s) 295
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 5 cut(s) 2, 29, 46, 67, 195
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MflI RGATCY 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 361
MluCI AATT 5 cut(s) 88, 239, 255, 282, 314
MlyI GAGTC 1 cut(s) 30
MmeI TCCRAC 2 cut(s) 307, 348
MnlI CCTC 2 cut(s) 133, 333
MslI CAYNNNNRTG 1 cut(s) 296
MspR9I CCNGG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 17
MvnI CGCG 1 cut(s) 39
NdeII GATC 1 cut(s) 33
NlaIII CATG 1 cut(s) 295
PflMI CCANNNNNTGG 1 cut(s) 16
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PsuI RGATCY 1 cut(s) 33
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 296
Sau3AI GATC 1 cut(s) 33
SchI GAGTC 1 cut(s) 30
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 1 cut(s) 361
SetI ASST 4 cut(s) 18, 129, 327, 344
SmiMI CAYNNNNRTG 1 cut(s) 296
Sse9I AATT 5 cut(s) 88, 239, 255, 282, 314
SsiI CCGC 1 cut(s) 37
StyD4I CCNGG 1 cut(s) 15
TasI AATT 5 cut(s) 88, 239, 255, 282, 314
TatI WGTACW 1 cut(s) 99
TscAI CASTG 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 171
TspRI CASTG 1 cut(s) 214
Van91I CCANNNNNTGG 1 cut(s) 16
XapI RAATTY 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.