Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003279

Physical Location & Seq

Genomic Coordinates Forward (+)

40232684 .. 40233264

Gene Structure 581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029550

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAGTGCTCAGGTGTTGGACTTGCAGAATATGGCTGTGAAGAGGGAAGAGGGGAGGAGAGGGAGGGAGTGTAGGAGAGAGAAATGTGAGGCTGAGAGAGAGGAAAGGAGGAAAGAAGTTGAGTTTAGGAGAGAGAAGAGGAGGAATGAGCAGGAGGACTTGTTAGAAGATAGAGAATTGGAGTTGCAAGAGAGAGGGGTCATGTGGACAAGAAGGGAGTTTGAGAAACAGTTGAGGTTCCAGGGGGAGTTTGATGAGGAGCTTCAGAGGAGGATGAGGATGGAGGAGAGGAGGGAGGAGGAGGAGGAGTTGGAGTGGTGGGAGAGGATGATAGGTTTGCAAATTCAGCATGAGAAGCAAATGATGCAAATGCATGCTGAGGCATGCCAGAACCAAATGCAGATTCTTGGGATCATGGCTAGATTTAATTTGCAGCATCCCGGTGGACTGGGTGACAGTGGGAAGCCGGATTCCAATTCGCCTTCTGAGTTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

20.26

Weight (kDa)

5.21

Isoelectric Point (pI)

91.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003279)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06071
malus_domestica	MD09G1261100.v1.1
prunus_persica	Prupe.3G158400_v2.0.a1
pyrus_communis	pycom09g17540
rosa_chinensis	RchiOBHm_Chr1g0333501 RchiOBHm_Chr1g0334211 RchiOBHm_Chr7g0221661
rosa_laevigata	RLG00000002147 RLG00000029549 RLG00000029550 RLG00000029599 RLG00000029600 RLG00000029601
rosa_multiflora	Rmu_sc0000494.1_g000002 Rmu_sc0000494.1_g000004 Rmu_sc0000494.1_g000017 Rmu_sc0002955.1_g000015 Rmu_sc0003435.1_g000020 Rmu_sc0005016.1_g000034 Rmu_sc0012130.1_g000001 Rmu_sc0028037.1_g000004
rosa_roxburghii	Rroxscaffold_2G00088180 Rroxscaffold_3G00238140 Rroxscaffold_4G00317400
rosa_rugosa	Rorug01G0109400 Rorug01G0109500 Rorug01G0110100 Rorug01G0110200 Rorug01G0110300 Rorug07G0202800
rosa_samantha	Rh1BG101600 Rh1CG126900 Rh1CG129800 Rh7AG343300 Rh7BG333400
rosa_wichuraiana	Rw0G003360 Rw7G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	419
AcsI	RAATTY	1 cut(s)	342
AcuI	CTGAAG	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	240
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
Alw21I	GWGCWC	1 cut(s)	10
AlwI	GGATC	1 cut(s)	419
ApeKI	GCWGC	1 cut(s)	433
ApoI	RAATTY	1 cut(s)	342
AsuC2I	CCSGG	1 cut(s)	441
AsuHPI	GGTGA	1 cut(s)	464
Bbv12I	GWGCWC	1 cut(s)	10
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	1 cut(s)	274
BciT130I	CCWGG	1 cut(s)	242
BcnI	CCSGG	1 cut(s)	441
BfaI	CTAG	2 cut(s)	420, 496
BisI	GCNGC	1 cut(s)	434
BlsI	GCNGC	1 cut(s)	435
Bme1390I	CCNGG	2 cut(s)	242, 441
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	2 cut(s)	242, 441
BmrI	ACTGGG	1 cut(s)	458
BmsI	GCATC	2 cut(s)	354, 445
BmuI	ACTGGG	1 cut(s)	458
Bpu10I	CCTNAGC	2 cut(s)	9, 378
BpuMI	CCSGG	1 cut(s)	441
BsaJI	CCNNGG	1 cut(s)	241
BsaXI	ACNNNNNCTCC	8 cut(s)	55, 85, 146, 176, 293, 299, 323, 329
Bse1I	ACTGG	1 cut(s)	453
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	4 cut(s)	279, 285, 333, 436
BseMII	CTCAG	4 cut(s)	23, 84, 369, 477
BseNI	ACTGG	1 cut(s)	453
BseXI	GCAGC	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	441, 467
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	1 cut(s)	411
BspCNI	CTCAG	4 cut(s)	22, 85, 370, 478
BspLI	GGNNCC	1 cut(s)	239
BspPI	GGATC	1 cut(s)	419
BsrI	ACTGG	1 cut(s)	453
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	2 cut(s)	231, 458
Bst6I	CTCTTC	3 cut(s)	35, 42, 131
BstAPI	GCANNNNNTGC	1 cut(s)	364
BstC8I	GCNNGC	2 cut(s)	375, 385
BstDEI	CTNAG	4 cut(s)	9, 93, 378, 486
BstF5I	GGATG	4 cut(s)	279, 285, 333, 436
BstKTI	GATC	1 cut(s)	414
BstMBI	GATC	1 cut(s)	411
BstMWI	GCNNNNNNNGC	3 cut(s)	346, 355, 364
BstNI	CCWGG	1 cut(s)	242
BstNSI	RCATGY	2 cut(s)	377, 387
BstSCI	CCNGG	2 cut(s)	240, 439
BstV1I	GCAGC	1 cut(s)	445
BtsCI	GGATG	4 cut(s)	279, 285, 333, 436
BtsIMutI	CAGTG	1 cut(s)	463
Cac8I	GCNNGC	2 cut(s)	375, 385
CviAII	CATG	5 cut(s)	202, 350, 374, 384, 415
CviJI	RGCY	5 cut(s)	35, 92, 262, 419, 466
CviKI_1	RGCY	5 cut(s)	35, 92, 262, 419, 466
DdeI	CTNAG	4 cut(s)	9, 93, 378, 486
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
Eam1104I	CTCTTC	3 cut(s)	35, 42, 131
EarI	CTCTTC	3 cut(s)	35, 42, 131
Eco57I	CTGAAG	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	240
EcoT22I	ATGCAT	1 cut(s)	375
FaeI	CATG	5 cut(s)	205, 353, 377, 387, 418
FaiI	YATR	6 cut(s)	32, 203, 351, 375, 385, 416
FatI	CATG	5 cut(s)	201, 349, 373, 383, 414
Fnu4HI	GCNGC	1 cut(s)	434
FokI	GGATG	4 cut(s)	286, 292, 340, 423
Fsp4HI	GCNGC	1 cut(s)	434
FspBI	CTAG	2 cut(s)	420, 496
GluI	GCNGC	1 cut(s)	434
HapII	CCGG	2 cut(s)	441, 467
Hin1II	CATG	5 cut(s)	205, 353, 377, 387, 418
HinfI	GANTC	2 cut(s)	403, 470
HpaII	CCGG	2 cut(s)	441, 467
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	2 cut(s)	207, 446
Hpy188I	TCNGA	2 cut(s)	267, 487
Hpy8I	GTNNAC	2 cut(s)	207, 446
HpyAV	CCTTC	2 cut(s)	207, 492
HpyCH4III	ACNGT	2 cut(s)	231, 458
HpyCH4V	TGCA	7 cut(s)	25, 187, 340, 367, 373, 400, 433
HpyF10VI	GCNNNNNNNGC	3 cut(s)	346, 355, 364
HpyF3I	CTNAG	4 cut(s)	9, 93, 378, 486
Hsp92II	CATG	5 cut(s)	205, 353, 377, 387, 418
Kzo9I	GATC	1 cut(s)	411
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	7 cut(s)	137, 227, 254, 401, 434, 454, 480
Lsp1109I	GCAGC	1 cut(s)	445
LweI	GCATC	2 cut(s)	354, 445
MaeI	CTAG	2 cut(s)	420, 496
MaeIII	GTNAC	1 cut(s)	452
MalI	GATC	1 cut(s)	413
MboI	GATC	1 cut(s)	411
MboII	GAAGA	4 cut(s)	52, 59, 148, 179
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	4 cut(s)	176, 342, 427, 475
MmeI	TCCRAC	1 cut(s)	291
Mph1103I	ATGCAT	1 cut(s)	375
MseI	TTAA	1 cut(s)	426
MslI	CAYNNNNRTG	1 cut(s)	441
MspI	CCGG	2 cut(s)	441, 467
MspR9I	CCNGG	2 cut(s)	242, 441
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	3 cut(s)	346, 355, 364
NciI	CCSGG	1 cut(s)	441
NdeII	GATC	1 cut(s)	411
NlaIII	CATG	5 cut(s)	205, 353, 377, 387, 418
NlaIV	GGNNCC	1 cut(s)	239
NmuCI	GTSAC	1 cut(s)	452
NsiI	ATGCAT	1 cut(s)	375
NspI	RCATGY	2 cut(s)	377, 387
PaeI	GCATGC	2 cut(s)	377, 387
PfeI	GAWTC	2 cut(s)	403, 470
PkrI	GCNGC	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	441
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	1 cut(s)	434
Sau3AI	GATC	1 cut(s)	411
ScrFI	CCNGG	2 cut(s)	242, 441
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	4 cut(s)	15, 239, 264, 337
SfaNI	GCATC	2 cut(s)	354, 445
SmiMI	CAYNNNNRTG	1 cut(s)	441
SphI	GCATGC	2 cut(s)	377, 387
Sse9I	AATT	4 cut(s)	176, 342, 427, 475
SspMI	CTAG	2 cut(s)	420, 496
StyD4I	CCNGG	2 cut(s)	240, 439
TaaI	ACNGT	2 cut(s)	231, 458
TasI	AATT	4 cut(s)	176, 342, 427, 475
TfiI	GAWTC	2 cut(s)	403, 470
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	1 cut(s)	433
Tsp45I	GTSAC	1 cut(s)	452
TspRI	CASTG	1 cut(s)	463
XapI	RAATTY	1 cut(s)	342
XceI	RCATGY	2 cut(s)	377, 387
XspI	CTAG	2 cut(s)	420, 496
Zsp2I	ATGCAT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.