RchiOBHm_Chr1g0333501

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003279
Physical Location & Seq
Reverse (-)
25632622 .. 25634387
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56230

Sequence Viewer

Length: 549 bp
ATGCGCCACCAGTACCTGGGAGTCACGCAGAAAATCCGGGTCTCCAAGGACAAGTTCAACTGGAAGGATGGTGAAAATCACTGGGAGAATTTTTTGAAGTACAAGGAAGTGTTTGGTGATGTGGAGCTTGATGGTAAGGGCAAGAGGTCGTGTGAAAATAACAACTTTGATGTTATTGGGGATTGTGGGGACTTAGGGTTTGGGATTGATTTTCAGGATTTAGAGGAAGAAGAAGATGAAGAAGAAGAAGAACATTTGGAAGAAGAAGAAGATGGTACTGCTGGTGATGACGATAATGGTGGCGAGGAATTGGGTAAAAGTGAAGTTGGTGAGTTTGGGGGTGAAAGGGAAATTGGGGACATGGGAATGGCCCAAAAAAGGAAATTGAGTAAGGTTGGATTGCATAGGAGGATGGGGTTGATGAATGCTCAGGTGTTGGACTTGCAGAATATGGTTATGAAGAGGGAAGAGGTGAGGAGAGAGAGGGAGTGTAGGAGAGAAAAAGGTGAGGCTGAGAGAGAGGAAAGGAGGAAAGAAGTTAGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

21.22

Weight (kDa)

4.74

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 16
AcsI RAATTY 1 cut(s) 88
AfaI GTAC 3 cut(s) 14, 101, 277
AfiI CCNNNNNNNGG 2 cut(s) 16, 378
AgsI TTSAA 2 cut(s) 58, 97
AjnI CCWGG 1 cut(s) 15
AjuI GAANNNNNNNTTGG 4 cut(s) 38, 70, 336, 368
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw26I GTCTC 1 cut(s) 46
AlwNI CAGNNNCTG 1 cut(s) 16
AoxI GGCC 1 cut(s) 369
ApoI RAATTY 1 cut(s) 88
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 370
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 7 cut(s) 83, 128, 296, 341, 353, 484, 518
BccI CCATC 4 cut(s) 62, 125, 266, 406
BciT130I CCWGG 1 cut(s) 17
BcnI CCSGG 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 46
Bme1390I CCNGG 2 cut(s) 17, 38
BmgT120I GGNCC 1 cut(s) 370
BmrFI CCNGG 2 cut(s) 17, 38
BmrI ACTGGG 1 cut(s) 91
BmuI ACTGGG 1 cut(s) 91
Bpu10I CCTNAGC 1 cut(s) 429
BpuMI CCSGG 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 2 cut(s) 16, 45
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 378
Bse1I ACTGG 3 cut(s) 10, 65, 86
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 16, 45
BseGI GGATG 2 cut(s) 73, 417
BseLI CCNNNNNNNGG 2 cut(s) 16, 378
BseMII CTCAG 2 cut(s) 443, 504
BseNI ACTGG 3 cut(s) 10, 65, 86
BseRI GAGGAG 1 cut(s) 490
BshFI GGCC 1 cut(s) 371
BsiSI CCGG 1 cut(s) 37
BslFI GGGAC 2 cut(s) 203, 371
BslI CCNNNNNNNGG 2 cut(s) 16, 378
BsmAI GTCTC 1 cut(s) 46
BsmFI GGGAC 2 cut(s) 203, 371
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 1 cut(s) 371
Bso31I GGTCTC 1 cut(s) 46
BspANI GGCC 1 cut(s) 371
BspCNI CTCAG 2 cut(s) 442, 505
BspTNI GGTCTC 1 cut(s) 46
BsrI ACTGG 3 cut(s) 10, 65, 86
BssECI CCNNGG 2 cut(s) 16, 45
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 17
Bst6I CTCTTC 2 cut(s) 455, 462
BstDEI CTNAG 3 cut(s) 193, 429, 513
BstF5I GGATG 2 cut(s) 73, 417
BstHHI GCGC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 46
BstNI CCWGG 1 cut(s) 17
BstSCI CCNGG 2 cut(s) 15, 36
BsuRI GGCC 1 cut(s) 371
BtsCI GGATG 2 cut(s) 73, 417
BtsIMutI CAGTG 1 cut(s) 79
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 370
Csp6I GTAC 3 cut(s) 13, 100, 276
CviAII CATG 1 cut(s) 361
CviJI RGCY 3 cut(s) 127, 371, 512
CviKI_1 RGCY 3 cut(s) 127, 371, 512
CviQI GTAC 3 cut(s) 13, 100, 276
DdeI CTNAG 3 cut(s) 193, 429, 513
Eam1104I CTCTTC 2 cut(s) 455, 462
EarI CTCTTC 2 cut(s) 455, 462
Eco130I CCWWGG 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 364
FaiI YATR 4 cut(s) 362, 405, 452, 458
FaqI GGGAC 2 cut(s) 203, 371
FatI CATG 1 cut(s) 360
FokI GGATG 2 cut(s) 80, 424
GlaI GCGC 1 cut(s) 5
HaeIII GGCC 1 cut(s) 371
HapII CCGG 1 cut(s) 37
HhaI GCGC 1 cut(s) 6
Hin1II CATG 1 cut(s) 364
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 1 cut(s) 21
HpaII CCGG 1 cut(s) 37
HphI GGTGA 7 cut(s) 83, 128, 296, 341, 353, 484, 518
Hpy188III TCNNGA 1 cut(s) 215
HpyAV CCTTC 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 403, 445
HpyF3I CTNAG 3 cut(s) 193, 429, 513
Hsp92II CATG 1 cut(s) 364
HspAI GCGC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 9 cut(s) 2, 23, 29, 46, 50, 67, 200, 267, 416
MaeIII GTNAC 1 cut(s) 22
MluCI AATT 4 cut(s) 88, 308, 351, 383
MlyI GAGTC 1 cut(s) 30
MmeI TCCRAC 2 cut(s) 376, 417
MslI CAYNNNNRTG 1 cut(s) 365
MspI CCGG 1 cut(s) 37
MspR9I CCNGG 2 cut(s) 17, 38
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 1 cut(s) 17
NciI CCSGG 1 cut(s) 38
NlaIII CATG 1 cut(s) 364
NmuCI GTSAC 1 cut(s) 22
PctI GAATGC 1 cut(s) 430
PflMI CCANNNNNTGG 1 cut(s) 16
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PspPI GGNCC 1 cut(s) 370
PstNI CAGNNNCTG 1 cut(s) 16
RsaI GTAC 3 cut(s) 14, 101, 277
RsaNI GTAC 3 cut(s) 13, 100, 276
RseI CAYNNNNRTG 1 cut(s) 365
Sau96I GGNCC 1 cut(s) 370
SchI GAGTC 1 cut(s) 30
ScrFI CCNGG 2 cut(s) 17, 38
SetI ASST 7 cut(s) 18, 129, 149, 396, 435, 474, 508
SmiMI CAYNNNNRTG 1 cut(s) 365
Sse9I AATT 4 cut(s) 88, 308, 351, 383
StyD4I CCNGG 2 cut(s) 15, 36
StyI CCWWGG 1 cut(s) 45
TasI AATT 4 cut(s) 88, 308, 351, 383
TatI WGTACW 1 cut(s) 99
TscAI CASTG 1 cut(s) 86
TseFI GTSAC 1 cut(s) 22
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 3 cut(s) 252, 437, 473
TspRI CASTG 1 cut(s) 86
Van91I CCANNNNNTGG 1 cut(s) 16
XapI RAATTY 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.