Rorug01G0110300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003279
Physical Location & Seq
Forward (+)
19732282 .. 19734902
2621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0110300.1

Sequence Viewer

Length: 1182 bp
ATGAAAGATGGAGTTGTACAATCATCAGTCTTACGAGCTGTCGAGAGAGGAATTCCTGAGTTTGTTAAATCCATATGTAATGCGAATCGAGAACTTGCTCGAAGCACTAACGAAATGGGACGCAGCATATTTCACTATGCCATTGAATGTCGACAAGAAAAAGTTTACAACCTTATTTATGGGCATGACATGAGAAATGCGATTTCAAGTCTTACAGACGCGTATAATAATAACATGTTACATATGGCAGCATTGTTGTCTCCATTTGCACAGCTCAATCGGATTCCAAGTGCAGCTTTACAAATGCAAAGAGAATTACAATGGTTCAAGGAGGTGGAGACTGTTGTAGCTCCCAAGGCCCGTGAGTTCATAAATTGGACCGATTATATGACACCACGGGATCTATTTACAAAACATCACAGAAATTTGTTGAAGGAAGGAGAAAAATGGATGAAAGATACTGCAACTTCTTTTACAGTGGTCGGGGCTCTTATTGTTACCCTCATGTTTGCTACAGCATTTACGATTCCTGGAGGATATAAAGGAGATACAGAGAGCGAGCCACAAGAGGCTTGCCGAGCTGATGTTAACCGTAGGACTCATAAGGCCATTGACAGGGATCATCTTGTGGACTTGTCCATAGAGCTGCCCCTATATGGTGGTGTTCCTGATGGTGTTGTCGAGTTGCTTGGTCTCGACGCTGGTGCTGGAGCTAGGGGGAAAGAGAGTGTTCCGGCAGTGGAGGTGCCAGTGGCTGACCTACAGGAGCGTAGTGTTGATGATGTCGTGCATAAGGAGGCACCTCTGGATAATGTTCTTGTTGACATCAGCTCTGGTGAAACCAAGGTGGCAAGCCAACATGCCCCCAATGTTAGTTCTGTGGTAGTTACTGGTTCTAGGCGTACTGTTGAGCGGGTTGATCGAGTTGTCGCTTCTGAATGTGTGAGGCGTGTGGCCGAGTCCCTGGCTTCCTTGGTGTCTGATGCCCGTGCTAGGAGTACCGAGCCTTTAAAAAAGAAAAGAAAGGGTGGTGGTACTCGTCTTGGGCATCTTGCCATGGGTTTATCCCTGAATCTCGGGCTCAGAATAAGGCTCGACAAACCAGCAACCAAGGGGGAAAATCCAAGTCCCACTCTAGTGGTGGATCTCGGTACTCCCGAGCTGAGGTTACTGGTAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

393

Amino Acids

43.24

Weight (kDa)

7.73

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 148 - 185 1.4e-08 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 745, 799
AccBSI CCGCTC 1 cut(s) 913
AccI GTMKAC 1 cut(s) 151
AccII CGCG 1 cut(s) 221
AciI CCGC 1 cut(s) 913
AclWI GGATC 3 cut(s) 408, 627, 1152
AcoI YGGCCR 1 cut(s) 954
AcsI RAATTY 2 cut(s) 51, 424
AfaI GTAC 5 cut(s) 18, 904, 1000, 1036, 1153
AfiI CCNNNNNNNGG 4 cut(s) 615, 656, 993, 1164
AflIII ACRYGT 2 cut(s) 219, 234
AgsI TTSAA 4 cut(s) 146, 207, 328, 433
AjnI CCWGG 2 cut(s) 529, 963
AleI CACNNNNGTG 1 cut(s) 1136
AluBI AGCT 9 cut(s) 38, 274, 296, 350, 581, 646, 713, 831, 1162
AluI AGCT 9 cut(s) 38, 274, 296, 350, 581, 646, 713, 831, 1162
Alw26I GTCTC 3 cut(s) 264, 332, 698
AlwI GGATC 3 cut(s) 408, 627, 1152
AlwNI CAGNNNCTG 1 cut(s) 755
Ama87I CYCGRG 2 cut(s) 1076, 1157
AoxI GGCC 3 cut(s) 357, 606, 954
ApeKI GCWGC 4 cut(s) 123, 248, 293, 646
ApoI RAATTY 2 cut(s) 51, 424
AspS9I GGNCC 2 cut(s) 358, 378
AsuHPI GGTGA 1 cut(s) 848
AvaI CYCGRG 2 cut(s) 1076, 1157
AvaII GGWCC 1 cut(s) 378
BanI GGYRCC 2 cut(s) 745, 799
BanII GRGCYC 2 cut(s) 490, 1083
BbvCI CCTCAGC 1 cut(s) 1163
BbvI GCAGC 4 cut(s) 135, 260, 305, 633
BccI CCATC 2 cut(s) 2, 665
BcgI CGANNNNNNTGC 2 cut(s) 686, 720
BciT130I CCWGG 2 cut(s) 531, 965
BcoDI GTCTC 3 cut(s) 264, 332, 698
BfaI CTAG 4 cut(s) 714, 897, 993, 1136
BfmI CTRYAG 2 cut(s) 513, 761
BisI GCNGC 4 cut(s) 124, 249, 294, 647
BlsI GCNGC 4 cut(s) 125, 250, 295, 648
Bme1390I CCNGG 2 cut(s) 531, 965
Bme18I GGWCC 1 cut(s) 378
BmeT110I CYCGRG 2 cut(s) 1076, 1157
BmgT120I GGNCC 2 cut(s) 358, 378
BmiI GGNNCC 2 cut(s) 747, 801
BmrFI CCNGG 2 cut(s) 531, 965
BmsI GCATC 2 cut(s) 973, 1057
BpmI CTGGAG 2 cut(s) 552, 729
Bpu10I CCTNAGC 1 cut(s) 1163
BsaI GGTCTC 1 cut(s) 698
BsaJI CCNNGG 7 cut(s) 354, 395, 843, 963, 972, 1056, 1110
Bsc4I CCNNNNNNNGG 4 cut(s) 615, 656, 993, 1164
Bse1I ACTGG 3 cut(s) 749, 895, 1176
BseBI CCWGG 2 cut(s) 531, 965
BseDI CCNNGG 7 cut(s) 354, 395, 843, 963, 972, 1056, 1110
BseGI GGATG 1 cut(s) 456
BseLI CCNNNNNNNGG 4 cut(s) 615, 656, 993, 1164
BseMII CTCAG 3 cut(s) 48, 1096, 1154
BseNI ACTGG 3 cut(s) 749, 895, 1176
BseXI GCAGC 4 cut(s) 135, 260, 305, 633
BsgI GTGCAG 1 cut(s) 312
Bsh1236I CGCG 1 cut(s) 221
BshFI GGCC 3 cut(s) 359, 608, 956
BshNI GGYRCC 2 cut(s) 745, 799
BsiHKCI CYCGRG 2 cut(s) 1076, 1157
BsiSI CCGG 1 cut(s) 734
BslFI GGGAC 3 cut(s) 132, 946, 1113
BslI CCNNNNNNNGG 4 cut(s) 615, 656, 993, 1164
BsmAI GTCTC 3 cut(s) 264, 332, 698
BsmFI GGGAC 3 cut(s) 132, 946, 1113
BsnI GGCC 3 cut(s) 359, 608, 956
Bso31I GGTCTC 1 cut(s) 698
BsoBI CYCGRG 2 cut(s) 1076, 1157
Bsp1286I GDGCHC 2 cut(s) 490, 1083
Bsp1407I TGTACA 1 cut(s) 16
Bsp143I GATC 4 cut(s) 400, 619, 919, 1144
Bsp19I CCATGG 1 cut(s) 1056
BspACI CCGC 1 cut(s) 913
BspANI GGCC 3 cut(s) 359, 608, 956
BspCNI CTCAG 3 cut(s) 49, 1095, 1155
BspFNI CGCG 1 cut(s) 221
BspLI GGNNCC 2 cut(s) 747, 801
BspPI GGATC 3 cut(s) 408, 627, 1152
BspT107I GGYRCC 2 cut(s) 745, 799
BspTNI GGTCTC 1 cut(s) 698
BsrBI CCGCTC 1 cut(s) 913
BsrGI TGTACA 1 cut(s) 16
BsrI ACTGG 3 cut(s) 749, 895, 1176
BssECI CCNNGG 7 cut(s) 354, 395, 843, 963, 972, 1056, 1110
BssMI GATC 4 cut(s) 400, 619, 919, 1144
BssT1I CCWWGG 5 cut(s) 354, 843, 972, 1056, 1110
Bst2UI CCWGG 2 cut(s) 531, 965
Bst4CI ACNGT 4 cut(s) 343, 478, 593, 907
BstAUI TGTACA 1 cut(s) 16
BstC8I GCNNGC 3 cut(s) 560, 574, 853
BstDEI CTNAG 3 cut(s) 57, 1082, 1163
BstDSI CCRYGG 2 cut(s) 395, 1056
BstF5I GGATG 1 cut(s) 456
BstFNI CGCG 1 cut(s) 221
BstKTI GATC 4 cut(s) 403, 622, 922, 1147
BstMAI GTCTC 3 cut(s) 264, 332, 698
BstMBI GATC 4 cut(s) 400, 619, 919, 1144
BstMWI GCNNNNNNNGC 2 cut(s) 356, 578
BstNI CCWGG 2 cut(s) 531, 965
BstNSI RCATGY 2 cut(s) 238, 863
BstSCI CCNGG 2 cut(s) 529, 963
BstSFI CTRYAG 2 cut(s) 513, 761
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 4 cut(s) 135, 260, 305, 633
BstX2I RGATCY 2 cut(s) 400, 1144
BstXI CCANNNNNNTGG 1 cut(s) 1138
BstYI RGATCY 2 cut(s) 400, 1144
BsuRI GGCC 3 cut(s) 359, 608, 956
BtgI CCRYGG 2 cut(s) 395, 1056
BtsCI GGATG 1 cut(s) 456
BtsI GCAGTG 1 cut(s) 744
BtsIMutI CAGTG 3 cut(s) 483, 744, 756
Cac8I GCNNGC 3 cut(s) 560, 574, 853
CaiI CAGNNNCTG 1 cut(s) 755
Cfr13I GGNCC 2 cut(s) 358, 378
CseI GACGC 3 cut(s) 129, 227, 707
Csp6I GTAC 5 cut(s) 17, 903, 999, 1035, 1152
CviAII CATG 6 cut(s) 185, 190, 235, 505, 860, 1057
CviQI GTAC 5 cut(s) 17, 903, 999, 1035, 1152
DdeI CTNAG 3 cut(s) 57, 1082, 1163
DpnI GATC 4 cut(s) 402, 621, 921, 1146
DpnII GATC 4 cut(s) 400, 619, 919, 1144
DraI TTTAAA 1 cut(s) 1011
EaeI YGGCCR 1 cut(s) 954
Eco130I CCWWGG 5 cut(s) 354, 843, 972, 1056, 1110
Eco24I GRGCYC 2 cut(s) 490, 1083
Eco31I GGTCTC 1 cut(s) 698
Eco47I GGWCC 1 cut(s) 378
Eco88I CYCGRG 2 cut(s) 1076, 1157
EcoRI GAATTC 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 529, 963
EcoT14I CCWWGG 5 cut(s) 354, 843, 972, 1056, 1110
EcoT38I GRGCYC 2 cut(s) 490, 1083
ErhI CCWWGG 5 cut(s) 354, 843, 972, 1056, 1110
FaeI CATG 6 cut(s) 188, 193, 238, 508, 863, 1060
FalI AAGNNNNNCTT 2 cut(s) 280, 312
FaqI GGGAC 3 cut(s) 132, 946, 1113
FatI CATG 6 cut(s) 184, 189, 234, 504, 859, 1056
FauI CCCGC 1 cut(s) 906
FauNDI CATATG 2 cut(s) 74, 243
FblI GTMKAC 1 cut(s) 151
Fnu4HI GCNGC 4 cut(s) 124, 249, 294, 647
FokI GGATG 1 cut(s) 463
FriOI GRGCYC 2 cut(s) 490, 1083
Fsp4HI GCNGC 4 cut(s) 124, 249, 294, 647
FspBI CTAG 4 cut(s) 714, 897, 993, 1136
GluI GCNGC 4 cut(s) 124, 249, 294, 647
GsuI CTGGAG 2 cut(s) 552, 729
HaeIII GGCC 3 cut(s) 359, 608, 956
HapII CCGG 1 cut(s) 734
HgaI GACGC 3 cut(s) 129, 227, 707
Hin1II CATG 6 cut(s) 188, 193, 238, 508, 863, 1060
HincII GTYRAC 3 cut(s) 152, 589, 823
HindII GTYRAC 3 cut(s) 152, 589, 823
HinfI GANTC 6 cut(s) 85, 283, 526, 598, 959, 1072
HpaI GTTAAC 1 cut(s) 589
HpaII CCGG 1 cut(s) 734
HphI GGTGA 1 cut(s) 848
Hpy166II GTNNAC 5 cut(s) 152, 166, 589, 631, 823
Hpy188I TCNGA 5 cut(s) 282, 937, 982, 1085, 1181
Hpy188III TCNNGA 7 cut(s) 43, 56, 89, 668, 695, 806, 1157
Hpy8I GTNNAC 5 cut(s) 152, 166, 589, 631, 823
Hpy99I CGWCG 1 cut(s) 701
HpyAV CCTTC 2 cut(s) 427, 431
HpyCH4III ACNGT 4 cut(s) 343, 478, 593, 907
HpyCH4V TGCA 5 cut(s) 269, 293, 307, 464, 790
HpyF10VI GCNNNNNNNGC 2 cut(s) 356, 578
HpyF3I CTNAG 3 cut(s) 57, 1082, 1163
Hsp92II CATG 6 cut(s) 188, 193, 238, 508, 863, 1060
KspAI GTTAAC 1 cut(s) 589
Kzo9I GATC 4 cut(s) 400, 619, 919, 1144
LmnI GCTCC 3 cut(s) 355, 710, 766
Lsp1109I GCAGC 4 cut(s) 135, 260, 305, 633
LweI GCATC 2 cut(s) 973, 1057
MaeI CTAG 4 cut(s) 714, 897, 993, 1136
MaeIII GTNAC 4 cut(s) 237, 496, 886, 1167
MalI GATC 4 cut(s) 402, 621, 921, 1146
MbiI CCGCTC 1 cut(s) 913
MboI GATC 4 cut(s) 400, 619, 919, 1144
MflI RGATCY 2 cut(s) 400, 1144
MhlI GDGCHC 2 cut(s) 490, 1083
MluCI AATT 4 cut(s) 51, 314, 373, 424
MluI ACGCGT 1 cut(s) 219
MlyI GAGTC 2 cut(s) 592, 968
MseI TTAA 3 cut(s) 66, 588, 1010
MslI CAYNNNNRTG 1 cut(s) 1136
MspI CCGG 1 cut(s) 734
MspR9I CCNGG 2 cut(s) 531, 965
MvaI CCWGG 2 cut(s) 531, 965
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 2 cut(s) 356, 578
NcoI CCATGG 1 cut(s) 1056
NdeI CATATG 2 cut(s) 74, 243
NdeII GATC 4 cut(s) 400, 619, 919, 1144
NlaIII CATG 6 cut(s) 188, 193, 238, 508, 863, 1060
NlaIV GGNNCC 2 cut(s) 747, 801
NmeAIII GCCGAG 2 cut(s) 602, 982
NspI RCATGY 2 cut(s) 238, 863
OliI CACNNNNGTG 1 cut(s) 1136
PciI ACATGT 1 cut(s) 234
PcsI WCGNNNNNNNCGW 1 cut(s) 1155
PfeI GAWTC 4 cut(s) 85, 283, 526, 1072
PfoI TCCNGGA 1 cut(s) 529
PkrI GCNGC 4 cut(s) 125, 250, 295, 648
PleI GAGTC 2 cut(s) 592, 967
PpsI GAGTC 2 cut(s) 592, 967
PscI ACATGT 1 cut(s) 234
Psp6I CCWGG 2 cut(s) 529, 963
PspGI CCWGG 2 cut(s) 529, 963
PspN4I GGNNCC 2 cut(s) 747, 801
PspPI GGNCC 2 cut(s) 358, 378
PstNI CAGNNNCTG 1 cut(s) 755
PsuI RGATCY 2 cut(s) 400, 1144
RsaI GTAC 5 cut(s) 18, 904, 1000, 1036, 1153
RsaNI GTAC 5 cut(s) 17, 903, 999, 1035, 1152
RseI CAYNNNNRTG 1 cut(s) 1136
SalI GTCGAC 1 cut(s) 150
SaqAI TTAA 3 cut(s) 66, 588, 1010
SatI GCNGC 4 cut(s) 124, 249, 294, 647
Sau3AI GATC 4 cut(s) 400, 619, 919, 1144
Sau96I GGNCC 2 cut(s) 358, 378
SchI GAGTC 2 cut(s) 592, 968
ScrFI CCNGG 2 cut(s) 531, 965
SduI GDGCHC 2 cut(s) 490, 1083
SfaNI GCATC 2 cut(s) 973, 1057
SfcI CTRYAG 2 cut(s) 513, 761
SinI GGWCC 1 cut(s) 378
SmiMI CAYNNNNRTG 1 cut(s) 1136
Sse9I AATT 4 cut(s) 51, 314, 373, 424
SsiI CCGC 1 cut(s) 913
SspMI CTAG 4 cut(s) 714, 897, 993, 1136
StyD4I CCNGG 2 cut(s) 529, 963
StyI CCWWGG 5 cut(s) 354, 843, 972, 1056, 1110
TaaI ACNGT 4 cut(s) 343, 478, 593, 907
TaqI TCGA 8 cut(s) 42, 88, 100, 151, 681, 696, 922, 1095
TaqII GACCGA 1 cut(s) 395
TasI AATT 4 cut(s) 51, 314, 373, 424
TatI WGTACW 1 cut(s) 16
TfiI GAWTC 4 cut(s) 85, 283, 526, 1072
Tru1I TTAA 3 cut(s) 66, 588, 1010
Tru9I TTAA 3 cut(s) 66, 588, 1010
TscAI CASTG 3 cut(s) 483, 744, 756
TseI GCWGC 4 cut(s) 123, 248, 293, 646
TspDTI ATGAA 3 cut(s) 17, 358, 467
TspRI CASTG 3 cut(s) 483, 744, 756
VpaK11BI GGWCC 1 cut(s) 378
XapI RAATTY 2 cut(s) 51, 424
XceI RCATGY 2 cut(s) 238, 863
XcmI CCANNNNNNNNNTGG 1 cut(s) 1138
XmiI GTMKAC 1 cut(s) 151
XspI CTAG 4 cut(s) 714, 897, 993, 1136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.