Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003279

Physical Location & Seq

Genomic Coordinates Reverse (-)

28492677 .. 28493264

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG129800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAAGCGCAAGAAATGGTCAGAGCTTGAAGAACAGACCCTTCTCACAAAGTATTCTGAGCTTCTCAGCTCTGGAGCTCTAGCCAAGCTTATAACCTGTGAGAAAAAATTCAAGCCCATAGTGGAGCATGTGAACTTAGTGCACAACCTTGACGACCCTGTAACCTTCCCTTTCAAATGGTCCTGGCGCGACGTGTCAATCATGGTCCAAAACATGCGCCACCAGTACCTGGGAGTCAAGCAGAAGATCCGGGTCTCCAAGGACGAGTTCAACTGGAAGGATGGTGAAAATCACTGGGAGAATTTCTTGAAGTACAAGGAAGTGTTTGGTGATGTGGAGCTTGATGGTAAGGGCAAGAGGTTGTATGAAAATGATAACTTTGATGTTTTTGATGATTGTGGGGACTTAGGGTTTGGAATTGATTGTGAGGATTTAGAGGAAGAAGAAGATGAAGAAGAAGAAGAACATTTGGAAGAAGAAGAAGAAGAAGATGGTACTGGTGGTGATGACGATAATCGTGGCGAGGAATTGGGTAAAACTGAAGTTGGAGTGGCGGGAGAGGATGGTAGGTTTGCAAATTCAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

22.65

Weight (kDa)

4.44

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003279)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06071
malus_domestica	MD09G1261100.v1.1
prunus_persica	Prupe.3G158400_v2.0.a1
pyrus_communis	pycom09g17540
rosa_chinensis	RchiOBHm_Chr1g0333501 RchiOBHm_Chr1g0334211 RchiOBHm_Chr7g0221661
rosa_laevigata	RLG00000002147 RLG00000029549 RLG00000029550 RLG00000029599 RLG00000029600 RLG00000029601
rosa_multiflora	Rmu_sc0000494.1_g000002 Rmu_sc0000494.1_g000004 Rmu_sc0000494.1_g000017 Rmu_sc0002955.1_g000015 Rmu_sc0003435.1_g000020 Rmu_sc0005016.1_g000034 Rmu_sc0012130.1_g000001 Rmu_sc0028037.1_g000004
rosa_roxburghii	Rroxscaffold_2G00088180 Rroxscaffold_3G00238140 Rroxscaffold_4G00317400
rosa_rugosa	Rorug01G0109400 Rorug01G0109500 Rorug01G0110100 Rorug01G0110200 Rorug01G0110300 Rorug07G0202800
rosa_samantha	Rh1BG101600 Rh1CG126900 Rh1CG129800 Rh7AG343300 Rh7BG333400
rosa_wichuraiana	Rw0G003360 Rw7G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccII	CGCG	1 cut(s)	189
AciI	CCGC	1 cut(s)	554
AclWI	GGATC	1 cut(s)	241
AcsI	RAATTY	3 cut(s)	107, 301, 577
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	3 cut(s)	227, 314, 496
AfiI	CCNNNNNNNGG	1 cut(s)	229
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	5 cut(s)	29, 112, 175, 271, 310
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	2 cut(s)	182, 228
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	6 cut(s)	25, 61, 69, 77, 88, 340
AluI	AGCT	6 cut(s)	25, 61, 69, 77, 88, 340
Alw21I	GWGCWC	2 cut(s)	79, 144
Alw26I	GTCTC	1 cut(s)	259
Alw44I	GTGCAC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	241
AlwNI	CAGNNNCTG	1 cut(s)	229
ApaLI	GTGCAC	1 cut(s)	140
ApoI	RAATTY	3 cut(s)	107, 301, 577
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
Asp700I	GAANNNNTTC	1 cut(s)	107
AspLEI	GCGC	3 cut(s)	9, 189, 219
AspS9I	GGNCC	2 cut(s)	180, 205
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	3 cut(s)	296, 341, 515
AvaII	GGWCC	2 cut(s)	180, 205
BaeGI	GKGCMC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	79
Bbv12I	GWGCWC	2 cut(s)	79, 144
BccI	CCATC	4 cut(s)	275, 338, 485, 557
BciT130I	CCWGG	2 cut(s)	184, 230
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	1 cut(s)	80
Bme1390I	CCNGG	3 cut(s)	184, 230, 251
Bme18I	GGWCC	2 cut(s)	180, 205
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	180, 205
BmrFI	CCNGG	3 cut(s)	184, 230, 251
BmrI	ACTGGG	1 cut(s)	304
BmuI	ACTGGG	1 cut(s)	304
BpmI	CTGGAG	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	2 cut(s)	229, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	4 cut(s)	223, 278, 299, 502
BseBI	CCWGG	2 cut(s)	184, 230
BseDI	CCNNGG	2 cut(s)	229, 258
BseGI	GGATG	2 cut(s)	286, 568
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	2 cut(s)	48, 79
BseNI	ACTGG	4 cut(s)	223, 278, 299, 502
BseSI	GKGCMC	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	189
BsiHKAI	GWGCWC	2 cut(s)	79, 144
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	416
Bso31I	GGTCTC	1 cut(s)	259
Bsp1286I	GDGCHC	2 cut(s)	79, 144
Bsp143I	GATC	1 cut(s)	246
BspACI	CCGC	1 cut(s)	554
BspCNI	CTCAG	2 cut(s)	49, 78
BspFNI	CGCG	1 cut(s)	189
BspPI	GGATC	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	259
BsrI	ACTGG	4 cut(s)	223, 278, 299, 502
BssECI	CCNNGG	2 cut(s)	229, 258
BssMI	GATC	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	258
Bst2UI	CCWGG	2 cut(s)	184, 230
BstDEI	CTNAG	4 cut(s)	57, 65, 136, 406
BstF5I	GGATG	2 cut(s)	286, 568
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	3 cut(s)	9, 189, 219
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	1 cut(s)	581
BstNI	CCWGG	2 cut(s)	184, 230
BstNSI	RCATGY	2 cut(s)	131, 217
BstSCI	CCNGG	3 cut(s)	182, 228, 249
BstSLI	GKGCMC	1 cut(s)	144
BstUI	CGCG	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	286, 568
BtsIMutI	CAGTG	1 cut(s)	292
CaiI	CAGNNNCTG	1 cut(s)	229
CfoI	GCGC	3 cut(s)	9, 189, 219
Cfr13I	GGNCC	2 cut(s)	180, 205
Csp6I	GTAC	3 cut(s)	226, 313, 495
CviAII	CATG	4 cut(s)	128, 202, 214, 585
CviJI	RGCY	8 cut(s)	25, 61, 69, 77, 83, 88, 115, 340
CviKI_1	RGCY	8 cut(s)	25, 61, 69, 77, 83, 88, 115, 340
CviQI	GTAC	3 cut(s)	226, 313, 495
DdeI	CTNAG	4 cut(s)	57, 65, 136, 406
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
Ecl136II	GAGCTC	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	259
Eco47I	GGWCC	2 cut(s)	180, 205
Eco53kI	GAGCTC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	561
EcoICRI	GAGCTC	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	182, 228
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	4 cut(s)	131, 205, 217, 588
FaiI	YATR	7 cut(s)	92, 119, 129, 203, 215, 366, 586
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	4 cut(s)	127, 201, 213, 584
FauI	CCCGC	1 cut(s)	547
FokI	GGATG	2 cut(s)	293, 575
FriOI	GRGCYC	1 cut(s)	79
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	3 cut(s)	8, 188, 218
GsuI	CTGGAG	1 cut(s)	93
HapII	CCGG	1 cut(s)	250
HhaI	GCGC	3 cut(s)	9, 189, 219
Hin1II	CATG	4 cut(s)	131, 205, 217, 588
Hin6I	GCGC	3 cut(s)	7, 187, 217
HinP1I	GCGC	3 cut(s)	7, 187, 217
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	1 cut(s)	234
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	3 cut(s)	296, 341, 515
Hpy166II	GTNNAC	2 cut(s)	133, 142
Hpy188I	TCNGA	2 cut(s)	22, 58
Hpy188III	TCNNGA	2 cut(s)	72, 307
Hpy8I	GTNNAC	2 cut(s)	133, 142
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	3 cut(s)	50, 175, 271
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	2 cut(s)	142, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	581
HpyF3I	CTNAG	4 cut(s)	57, 65, 136, 406
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	4 cut(s)	131, 205, 217, 588
HspAI	GCGC	3 cut(s)	7, 187, 217
Kzo9I	GATC	1 cut(s)	246
LmnI	GCTCC	3 cut(s)	74, 124, 337
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	2 cut(s)	79, 144
MluCI	AATT	5 cut(s)	107, 301, 417, 527, 577
MlyI	GAGTC	1 cut(s)	243
MmeI	TCCRAC	1 cut(s)	526
MnlI	CCTC	5 cut(s)	351, 421, 430, 517, 553
MroXI	GAANNNNTTC	1 cut(s)	107
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	3 cut(s)	184, 230, 251
MvaI	CCWGG	2 cut(s)	184, 230
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	581
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	4 cut(s)	131, 205, 217, 588
NspI	RCATGY	2 cut(s)	131, 217
PdmI	GAANNNNTTC	1 cut(s)	107
PflMI	CCANNNNNTGG	1 cut(s)	229
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PsiI	TTATAA	1 cut(s)	92
Psp124BI	GAGCTC	1 cut(s)	79
Psp6I	CCWGG	2 cut(s)	182, 228
PspGI	CCWGG	2 cut(s)	182, 228
PspPI	GGNCC	2 cut(s)	180, 205
PstNI	CAGNNNCTG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	246
RsaI	GTAC	3 cut(s)	227, 314, 496
RsaNI	GTAC	3 cut(s)	226, 313, 495
SacI	GAGCTC	1 cut(s)	79
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	2 cut(s)	180, 205
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	3 cut(s)	184, 230, 251
SduI	GDGCHC	2 cut(s)	79, 144
SinI	GGWCC	2 cut(s)	180, 205
Sse9I	AATT	5 cut(s)	107, 301, 417, 527, 577
SsiI	CCGC	1 cut(s)	554
SspMI	CTAG	1 cut(s)	80
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	3 cut(s)	182, 228, 249
StyI	CCWWGG	1 cut(s)	258
TaiI	ACGT	1 cut(s)	195
TasI	AATT	5 cut(s)	107, 301, 417, 527, 577
TatI	WGTACW	1 cut(s)	312
TscAI	CASTG	1 cut(s)	299
TspDTI	ATGAA	3 cut(s)	17, 381, 465
TspRI	CASTG	1 cut(s)	299
Van91I	CCANNNNNTGG	1 cut(s)	229
VneI	GTGCAC	1 cut(s)	140
VpaK11BI	GGWCC	2 cut(s)	180, 205
XapI	RAATTY	3 cut(s)	107, 301, 577
XceI	RCATGY	2 cut(s)	131, 217
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.