Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028037.1

Orthogroup ID

OG0003279

Physical Location & Seq

Genomic Coordinates Reverse (-)

5146 .. 5961

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028037.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atgaagcgcaagaaatggtcagagcttgaagaacagacccttctcacaaagtattctgagcttctcagctctggagctctagccaagctcaaaactcgtgagaaaaaattcaagcccatagcggaccatgttaacttagtgcacaaccttgacgaccctgtaaccttccctttcaaatggtcctggcgcgacgtgtcaatcatggtccaaaacatgcgccaccagtaccagggagtcaagcagaagatccgggtctccaaggacgagttcaactggaaggatgttggtgagattgggggtgaaagggaaattggggacatgggaatggctcaaaaaaggaaattgagtaaggttggattgcataggaggttggggttgatgagtgctcaggtgttggacttgcagaatatgtttgtgaaaagggaagaggggaggggagagagggagtgtaggagagagaaaggtgaggctgagagagaggaaaggaggaaagaagttgagtttaggagagagaagaggaggaatgagcaggaggacttgttagaagatagagaattggagttgcaagggagtgaggtcatgtggacaagaagggagtttgagaaacggttgaggttacagggggagtttgatgaggagcgtcagaggaggatgaggatggaggagaggagggaggagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

27.49

Weight (kDa)

9.44

Isoelectric Point (pI)

62.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003279)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06071
malus_domestica	MD09G1261100.v1.1
prunus_persica	Prupe.3G158400_v2.0.a1
pyrus_communis	pycom09g17540
rosa_chinensis	RchiOBHm_Chr1g0333501 RchiOBHm_Chr1g0334211 RchiOBHm_Chr7g0221661
rosa_laevigata	RLG00000002147 RLG00000029549 RLG00000029550 RLG00000029599 RLG00000029600 RLG00000029601
rosa_multiflora	Rmu_sc0000494.1_g000002 Rmu_sc0000494.1_g000004 Rmu_sc0000494.1_g000017 Rmu_sc0002955.1_g000015 Rmu_sc0003435.1_g000020 Rmu_sc0005016.1_g000034 Rmu_sc0012130.1_g000001 Rmu_sc0028037.1_g000004
rosa_roxburghii	Rroxscaffold_2G00088180 Rroxscaffold_3G00238140 Rroxscaffold_4G00317400
rosa_rugosa	Rorug01G0109400 Rorug01G0109500 Rorug01G0110100 Rorug01G0110200 Rorug01G0110300 Rorug07G0202800
rosa_samantha	Rh1BG101600 Rh1CG126900 Rh1CG129800 Rh7AG343300 Rh7BG333400
rosa_wichuraiana	Rw0G003360 Rw7G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	189
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	107
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	229
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	4 cut(s)	29, 112, 175, 271
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	2 cut(s)	182, 228
AjuI	GAANNNNNNNTTGG	4 cut(s)	251, 283, 294, 326
AluBI	AGCT	5 cut(s)	25, 61, 69, 77, 88
AluI	AGCT	5 cut(s)	25, 61, 69, 77, 88
Alw21I	GWGCWC	3 cut(s)	79, 144, 388
Alw26I	GTCTC	1 cut(s)	259
Alw44I	GTGCAC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	241
ApaLI	GTGCAC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	107
Asp700I	GAANNNNTTC	1 cut(s)	107
AspLEI	GCGC	3 cut(s)	9, 189, 219
AspS9I	GGNCC	3 cut(s)	124, 180, 205
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	3 cut(s)	299, 311, 476
AvaII	GGWCC	3 cut(s)	124, 180, 205
BaeGI	GKGCMC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	79
BauI	CACGAG	1 cut(s)	96
Bbv12I	GWGCWC	3 cut(s)	79, 144, 388
BccI	CCATC	1 cut(s)	652
BciT130I	CCWGG	2 cut(s)	184, 230
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	1 cut(s)	80
Bme1390I	CCNGG	3 cut(s)	184, 230, 251
Bme18I	GGWCC	3 cut(s)	124, 180, 205
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	3 cut(s)	124, 180, 205
BmrFI	CCNGG	3 cut(s)	184, 230, 251
BpmI	CTGGAG	1 cut(s)	93
Bpu10I	CCTNAGC	1 cut(s)	387
BpuMI	CCSGG	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	2 cut(s)	229, 258
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	2 cut(s)	223, 278
BseBI	CCWGG	2 cut(s)	184, 230
BseDI	CCNNGG	2 cut(s)	229, 258
BseGI	GGATG	3 cut(s)	286, 657, 663
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	4 cut(s)	48, 79, 401, 462
BseNI	ACTGG	2 cut(s)	223, 278
BseRI	GAGGAG	4 cut(s)	532, 650, 661, 677
BseSI	GKGCMC	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	189
BsiHKAI	GWGCWC	3 cut(s)	79, 144, 388
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	329
Bso31I	GGTCTC	1 cut(s)	259
Bsp1286I	GDGCHC	3 cut(s)	79, 144, 388
Bsp143I	GATC	1 cut(s)	246
BspACI	CCGC	1 cut(s)	122
BspCNI	CTCAG	4 cut(s)	49, 78, 400, 463
BspFNI	CGCG	1 cut(s)	189
BspPI	GGATC	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	259
BsrI	ACTGG	2 cut(s)	223, 278
BssECI	CCNNGG	2 cut(s)	229, 258
BssMI	GATC	1 cut(s)	246
BssSI	CACGAG	1 cut(s)	96
BssT1I	CCWWGG	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	96
Bst2UI	CCWGG	2 cut(s)	184, 230
Bst4CI	ACNGT	1 cut(s)	609
Bst6I	CTCTTC	2 cut(s)	420, 509
BstDEI	CTNAG	5 cut(s)	57, 65, 136, 387, 471
BstF5I	GGATG	3 cut(s)	286, 657, 663
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	3 cut(s)	9, 189, 219
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	246
BstNI	CCWGG	2 cut(s)	184, 230
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	3 cut(s)	182, 228, 249
BstSLI	GKGCMC	1 cut(s)	144
BstUI	CGCG	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	3 cut(s)	286, 657, 663
CfoI	GCGC	3 cut(s)	9, 189, 219
Cfr13I	GGNCC	3 cut(s)	124, 180, 205
CseI	GACGC	1 cut(s)	629
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	5 cut(s)	128, 202, 214, 319, 580
CviJI	RGCY	9 cut(s)	25, 61, 69, 77, 83, 88, 115, 329, 470
CviKI_1	RGCY	9 cut(s)	25, 61, 69, 77, 83, 88, 115, 329, 470
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	5 cut(s)	57, 65, 136, 387, 471
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	420, 509
EarI	CTCTTC	2 cut(s)	420, 509
Ecl136II	GAGCTC	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	259
Eco47I	GGWCC	3 cut(s)	124, 180, 205
Eco53kI	GAGCTC	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	182, 228
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	5 cut(s)	131, 205, 217, 322, 583
FaiI	YATR	8 cut(s)	119, 129, 203, 215, 320, 363, 410, 581
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	5 cut(s)	127, 201, 213, 318, 579
FokI	GGATG	3 cut(s)	293, 664, 670
FriOI	GRGCYC	1 cut(s)	79
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	3 cut(s)	8, 188, 218
GsuI	CTGGAG	1 cut(s)	93
HapII	CCGG	1 cut(s)	250
HgaI	GACGC	1 cut(s)	629
HhaI	GCGC	3 cut(s)	9, 189, 219
Hin1II	CATG	5 cut(s)	131, 205, 217, 322, 583
Hin6I	GCGC	3 cut(s)	7, 187, 217
HinP1I	GCGC	3 cut(s)	7, 187, 217
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	1 cut(s)	234
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	3 cut(s)	299, 311, 476
Hpy166II	GTNNAC	3 cut(s)	133, 142, 585
Hpy188I	TCNGA	3 cut(s)	22, 58, 645
Hpy188III	TCNNGA	2 cut(s)	72, 98
Hpy8I	GTNNAC	3 cut(s)	133, 142, 585
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	4 cut(s)	50, 175, 271, 585
HpyCH4III	ACNGT	1 cut(s)	609
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	4 cut(s)	142, 361, 403, 565
HpyF3I	CTNAG	5 cut(s)	57, 65, 136, 387, 471
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	5 cut(s)	131, 205, 217, 322, 583
HspAI	GCGC	3 cut(s)	7, 187, 217
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	246
LmnI	GCTCC	2 cut(s)	74, 637
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	2 cut(s)	160, 615
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	5 cut(s)	41, 256, 437, 526, 557
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	3 cut(s)	79, 144, 388
MluCI	AATT	4 cut(s)	107, 309, 341, 554
MlyI	GAGTC	1 cut(s)	243
MmeI	TCCRAC	2 cut(s)	334, 375
MroXI	GAANNNNTTC	1 cut(s)	107
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	323
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	3 cut(s)	184, 230, 251
MvaI	CCWGG	2 cut(s)	184, 230
MvnI	CGCG	1 cut(s)	189
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	5 cut(s)	131, 205, 217, 322, 583
NspI	RCATGY	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	107
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
Psp124BI	GAGCTC	1 cut(s)	79
Psp6I	CCWGG	2 cut(s)	182, 228
PspGI	CCWGG	2 cut(s)	182, 228
PspPI	GGNCC	3 cut(s)	124, 180, 205
PsuI	RGATCY	1 cut(s)	246
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
RseI	CAYNNNNRTG	1 cut(s)	323
SacI	GAGCTC	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	132
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	3 cut(s)	124, 180, 205
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	3 cut(s)	184, 230, 251
SduI	GDGCHC	3 cut(s)	79, 144, 388
SinI	GGWCC	3 cut(s)	124, 180, 205
SmiMI	CAYNNNNRTG	1 cut(s)	323
Sse9I	AATT	4 cut(s)	107, 309, 341, 554
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	1 cut(s)	80
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	3 cut(s)	182, 228, 249
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	609
TaiI	ACGT	1 cut(s)	195
TasI	AATT	4 cut(s)	107, 309, 341, 554
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TspDTI	ATGAA	1 cut(s)	17
VneI	GTGCAC	1 cut(s)	140
VpaK11BI	GGWCC	3 cut(s)	124, 180, 205
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.