RchiOBHm_Chr1g0334211

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003279
Physical Location & Seq
Reverse (-)
26361518 .. 26362830
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56297

Sequence Viewer

Length: 522 bp
ATGGTCCAAAACATGCGCCACCAGTACCTGGGAGTCAAGCAGAAGATCCGGGTCTCCAAGGACGAGTTCAACTGGAAGGATGGTGAAAATCACTGGGAGAATTTCTTGAAGTACAAGGAAGTGTTTGGTGATGTGGAGCTTGATGGTAAGGGCAAGAGGTTGAAGAAGAAGATGAAGAAGAAGAAGAACATTTGGAAGAAGAAGAAGAAGAAGATGGTACTGGTGGTGATGACGATAATCGTGGCGAGGAATTGGGTAAAACTGAAGTTGGAGTGGCGGGAGAGGATGGTAGGTTTGCAAATTCAGCATGAGAAGCAAATGATGCAAATGCATGCTGAGGCATGCCAGAACCAATTGCAGATTCTTGGGGTCATGGCTAGGTTTGTTTGTCAATTTTTTGGGTCAATGAGTGATGGCCTTGGAGGTGGTTTAGGGACTCTGCCACCCCAAATTTTGCAGAATTTGCAGCATCCTGGCGGACTGGGTGACAAATGGGAAGCCGGATTCCAATTCGCCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

20.28

Weight (kDa)

9.98

Isoelectric Point (pI)

32.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 28
AciI CCGC 2 cut(s) 277, 477
AclWI GGATC 1 cut(s) 40
AcsI RAATTY 4 cut(s) 100, 300, 450, 460
AcuI CTGAAG 1 cut(s) 284
AfaI GTAC 3 cut(s) 26, 113, 219
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 3 cut(s) 70, 109, 163
AjnI CCWGG 2 cut(s) 27, 472
AjuI GAANNNNNNNTTGG 4 cut(s) 50, 82, 345, 377
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 1 cut(s) 40
AlwNI CAGNNNCTG 1 cut(s) 28
AoxI GGCC 1 cut(s) 415
ApeKI GCWGC 1 cut(s) 466
ApoI RAATTY 4 cut(s) 100, 300, 450, 460
AspLEI GCGC 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 4 cut(s) 95, 140, 238, 497
AvaII GGWCC 1 cut(s) 4
BbvCI CCTCAGC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 478
BccI CCATC 5 cut(s) 74, 137, 208, 280, 407
BciT130I CCWGG 2 cut(s) 29, 474
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 1 cut(s) 378
BisI GCNGC 1 cut(s) 467
BlsI GCNGC 1 cut(s) 468
Bme1390I CCNGG 3 cut(s) 29, 50, 474
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 3 cut(s) 29, 50, 474
BmrI ACTGGG 2 cut(s) 103, 491
BmsI GCATC 2 cut(s) 312, 478
BmuI ACTGGG 2 cut(s) 103, 491
Bpu10I CCTNAGC 1 cut(s) 336
BpuMI CCSGG 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 58
BsaJI CCNNGG 3 cut(s) 28, 57, 418
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 5 cut(s) 22, 77, 98, 225, 486
BseBI CCWGG 2 cut(s) 29, 474
BseDI CCNNGG 3 cut(s) 28, 57, 418
BseGI GGATG 3 cut(s) 85, 291, 469
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 5 cut(s) 22, 77, 98, 225, 486
BseXI GCAGC 1 cut(s) 478
BshFI GGCC 1 cut(s) 417
BsiSI CCGG 2 cut(s) 49, 501
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 448
BsnI GGCC 1 cut(s) 417
Bso31I GGTCTC 1 cut(s) 58
Bsp143I GATC 1 cut(s) 45
BspACI CCGC 2 cut(s) 277, 477
BspANI GGCC 1 cut(s) 417
BspCNI CTCAG 1 cut(s) 328
BspPI GGATC 1 cut(s) 40
BspTNI GGTCTC 1 cut(s) 58
BsrI ACTGG 5 cut(s) 22, 77, 98, 225, 486
BssECI CCNNGG 3 cut(s) 28, 57, 418
BssMI GATC 1 cut(s) 45
BssT1I CCWWGG 2 cut(s) 57, 418
Bst2UI CCWGG 2 cut(s) 29, 474
BstAPI GCANNNNNTGC 2 cut(s) 322, 463
BstC8I GCNNGC 2 cut(s) 333, 343
BstDEI CTNAG 1 cut(s) 336
BstF5I GGATG 3 cut(s) 85, 291, 469
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 1 cut(s) 48
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 4 cut(s) 304, 313, 322, 463
BstNI CCWGG 2 cut(s) 29, 474
BstNSI RCATGY 3 cut(s) 16, 335, 345
BstSCI CCNGG 3 cut(s) 27, 48, 472
BstV1I GCAGC 1 cut(s) 478
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BsuRI GGCC 1 cut(s) 417
BtsCI GGATG 3 cut(s) 85, 291, 469
BtsIMutI CAGTG 1 cut(s) 91
Cac8I GCNNGC 2 cut(s) 333, 343
CaiI CAGNNNCTG 1 cut(s) 28
CfoI GCGC 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 3 cut(s) 25, 112, 218
CviAII CATG 5 cut(s) 13, 308, 332, 342, 373
CviJI RGCY 4 cut(s) 139, 377, 417, 500
CviKI_1 RGCY 4 cut(s) 139, 377, 417, 500
CviQI GTAC 3 cut(s) 25, 112, 218
DdeI CTNAG 1 cut(s) 336
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
EciI GGCGGA 1 cut(s) 492
Eco130I CCWWGG 2 cut(s) 57, 418
Eco31I GGTCTC 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 284
EcoRII CCWGG 2 cut(s) 27, 472
EcoT14I CCWWGG 2 cut(s) 57, 418
EcoT22I ATGCAT 1 cut(s) 333
ErhI CCWWGG 2 cut(s) 57, 418
FaeI CATG 5 cut(s) 16, 311, 335, 345, 376
FaiI YATR 5 cut(s) 14, 309, 333, 343, 374
FaqI GGGAC 1 cut(s) 448
FatI CATG 5 cut(s) 12, 307, 331, 341, 372
FauI CCCGC 1 cut(s) 270
Fnu4HI GCNGC 1 cut(s) 467
FokI GGATG 3 cut(s) 92, 298, 456
Fsp4HI GCNGC 1 cut(s) 467
FspBI CTAG 1 cut(s) 378
GlaI GCGC 1 cut(s) 17
GluI GCNGC 1 cut(s) 467
HaeIII GGCC 1 cut(s) 417
HapII CCGG 2 cut(s) 49, 501
HhaI GCGC 1 cut(s) 18
Hin1II CATG 5 cut(s) 16, 311, 335, 345, 376
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HinfI GANTC 4 cut(s) 33, 361, 436, 504
HpaII CCGG 2 cut(s) 49, 501
HphI GGTGA 4 cut(s) 95, 140, 238, 497
Hpy188I TCNGA 1 cut(s) 521
Hpy188III TCNNGA 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 70
HpyCH4V TGCA 6 cut(s) 298, 325, 331, 358, 457, 466
HpyF10VI GCNNNNNNNGC 4 cut(s) 304, 313, 322, 463
HpyF3I CTNAG 1 cut(s) 336
Hsp92II CATG 5 cut(s) 16, 311, 335, 345, 376
HspAI GCGC 1 cut(s) 16
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 1 cut(s) 136
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 2 cut(s) 312, 478
MaeI CTAG 1 cut(s) 378
MaeIII GTNAC 1 cut(s) 485
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MfeI CAATTG 1 cut(s) 353
MflI RGATCY 1 cut(s) 45
MluCI AATT 8 cut(s) 100, 250, 300, 353, 392, 450, 460, 509
MlyI GAGTC 2 cut(s) 42, 430
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 5 cut(s) 150, 240, 276, 331, 416
Mph1103I ATGCAT 1 cut(s) 333
MspI CCGG 2 cut(s) 49, 501
MspR9I CCNGG 3 cut(s) 29, 50, 474
MunI CAATTG 1 cut(s) 353
MvaI CCWGG 2 cut(s) 29, 474
MwoI GCNNNNNNNGC 4 cut(s) 304, 313, 322, 463
NciI CCSGG 1 cut(s) 50
NdeII GATC 1 cut(s) 45
NlaIII CATG 5 cut(s) 16, 311, 335, 345, 376
NmuCI GTSAC 1 cut(s) 485
NsiI ATGCAT 1 cut(s) 333
NspI RCATGY 3 cut(s) 16, 335, 345
PaeI GCATGC 2 cut(s) 335, 345
PfeI GAWTC 2 cut(s) 361, 504
PflMI CCANNNNNTGG 1 cut(s) 28
PkrI GCNGC 1 cut(s) 468
PleI GAGTC 2 cut(s) 41, 430
PpsI GAGTC 2 cut(s) 41, 430
Psp6I CCWGG 2 cut(s) 27, 472
PspGI CCWGG 2 cut(s) 27, 472
PspPI GGNCC 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 28
PsuI RGATCY 1 cut(s) 45
RsaI GTAC 3 cut(s) 26, 113, 219
RsaNI GTAC 3 cut(s) 25, 112, 218
SatI GCNGC 1 cut(s) 467
Sau3AI GATC 1 cut(s) 45
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 2 cut(s) 42, 430
ScrFI CCNGG 3 cut(s) 29, 50, 474
SetI ASST 6 cut(s) 30, 141, 161, 295, 383, 427
SfaNI GCATC 2 cut(s) 312, 478
SinI GGWCC 1 cut(s) 4
SphI GCATGC 2 cut(s) 335, 345
Sse9I AATT 8 cut(s) 100, 250, 300, 353, 392, 450, 460, 509
SsiI CCGC 2 cut(s) 277, 477
SspMI CTAG 1 cut(s) 378
StyD4I CCNGG 3 cut(s) 27, 48, 472
StyI CCWWGG 2 cut(s) 57, 418
TasI AATT 8 cut(s) 100, 250, 300, 353, 392, 450, 460, 509
TatI WGTACW 1 cut(s) 111
TfiI GAWTC 2 cut(s) 361, 504
TscAI CASTG 1 cut(s) 98
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 1 cut(s) 466
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 1 cut(s) 188
TspRI CASTG 1 cut(s) 98
Van91I CCANNNNNTGG 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 4 cut(s) 100, 300, 450, 460
XceI RCATGY 3 cut(s) 16, 335, 345
XspI CTAG 1 cut(s) 378
Zsp2I ATGCAT 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.